Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.57207 * 2 1 4 4 C 1.53533 * 109.56877 * 120.24425 * 2 1 3 5 5 N 1.47343 * 107.53944 * 178.11421 * 4 2 1 6 6 S 1.65603 * 121.17664 * 138.26846 * 5 4 2 7 7 O 1.42102 * 104.27766 * 213.25950 * 6 5 4 8 8 O 1.42096 * 104.27950 * 341.11314 * 6 5 4 9 9 C 1.81400 * 104.44969 * 97.18779 * 6 5 4 10 10 C 1.52995 * 109.47444 * 179.97438 * 9 6 5 11 11 C 1.52998 * 109.47202 * 300.00180 * 10 9 6 12 12 C 1.53001 * 109.47035 * 59.99805 * 10 9 6 13 13 C 1.50700 * 109.47285 * 179.97438 * 10 9 6 14 14 H 1.07996 * 119.99651 * 3.45196 * 13 10 9 15 15 C 1.37877 * 119.99916 * 183.45461 * 13 10 9 16 16 N 1.31517 * 119.99870 * 353.78846 * 15 13 10 17 17 Si 1.86801 * 120.00137 * 173.78908 * 15 13 10 18 18 H 1.48500 * 109.46656 * 94.99075 * 17 15 13 19 19 H 1.48500 * 109.47280 * 214.99361 * 17 15 13 20 20 H 1.48498 * 109.46692 * 334.99548 * 17 15 13 21 21 C 1.40243 * 117.64543 * 318.29681 * 5 4 2 22 22 C 1.38660 * 120.34771 * 193.50093 * 21 5 4 23 23 C 1.38864 * 118.23912 * 180.20241 * 22 21 5 24 24 C 1.38058 * 119.15119 * 0.03642 * 23 22 21 25 25 N 1.31928 * 121.19827 * 359.94744 * 24 23 22 26 26 C 1.32412 * 121.81347 * 359.95893 * 25 24 23 27 27 O 1.35826 * 119.52876 * 180.42311 * 26 25 24 28 28 H 1.08998 * 109.47469 * 299.75656 * 1 2 3 29 29 H 1.09003 * 109.46367 * 59.75574 * 1 2 3 30 30 H 1.08998 * 109.47233 * 179.74911 * 1 2 3 31 31 H 1.09000 * 109.84569 * 58.60836 * 4 2 1 32 32 H 1.09006 * 109.90599 * 297.65491 * 4 2 1 33 33 H 1.09002 * 109.46656 * 299.99687 * 9 6 5 34 34 H 1.08999 * 109.47003 * 59.99419 * 9 6 5 35 35 H 1.09003 * 109.47099 * 66.68938 * 11 10 9 36 36 H 1.09003 * 109.47438 * 186.69198 * 11 10 9 37 37 H 1.09003 * 109.47021 * 306.69196 * 11 10 9 38 38 H 1.09002 * 109.47361 * 59.99968 * 12 10 9 39 39 H 1.08999 * 109.47407 * 180.02562 * 12 10 9 40 40 H 1.09002 * 109.47165 * 300.00080 * 12 10 9 41 41 H 0.97008 * 120.00067 * 179.97438 * 16 15 13 42 42 H 1.08000 * 120.87807 * 0.18048 * 22 21 5 43 43 H 1.08002 * 120.42345 * 180.02562 * 23 22 21 44 44 H 1.08005 * 119.39954 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0443 -0.7287 1.2497 5 7 3.5161 -0.7424 1.1816 6 16 4.4392 -0.4541 2.5258 7 8 5.5902 0.2115 2.0243 8 8 3.5527 0.1943 3.4274 9 6 4.8750 -2.1050 3.1384 10 6 5.7391 -1.9716 4.3938 11 6 7.0160 -1.2001 4.0545 12 6 4.9589 -1.2170 5.4722 13 6 6.1006 -3.3431 4.9030 14 1 5.7963 -4.2210 4.3525 15 6 6.8196 -3.4772 6.0718 16 7 7.2950 -2.4109 6.6773 17 14 7.1186 -5.1733 6.7952 18 1 8.4390 -5.6791 6.3412 19 1 7.1039 -5.0888 8.2777 20 1 6.0508 -6.1001 6.3415 21 6 4.1074 -1.0078 -0.0620 22 6 5.4580 -1.3105 -0.1452 23 6 5.9991 -1.5616 -1.3992 24 6 5.1805 -1.5008 -2.5093 25 7 3.8984 -1.2103 -2.3979 26 6 3.3377 -0.9653 -1.2236 27 8 2.0113 -0.6793 -1.1618 28 1 -0.3634 0.5100 0.8921 29 1 -0.3632 0.5177 -0.8878 30 1 -0.3633 -1.0276 -0.0045 31 1 1.6650 -1.7504 1.2646 32 1 1.7203 -0.2008 2.1468 33 1 3.9652 -2.6547 3.3798 34 1 5.4312 -2.6424 2.3703 35 1 6.7621 -0.1710 3.8002 36 1 7.6846 -1.2073 4.9153 37 1 7.5111 -1.6724 3.2059 38 1 4.0491 -1.7666 5.7140 39 1 5.5746 -1.1215 6.3665 40 1 4.6971 -0.2250 5.1041 41 1 7.8006 -2.5051 7.4999 42 1 6.0729 -1.3496 0.7418 43 1 7.0469 -1.8013 -1.5048 44 1 5.5972 -1.6950 -3.4866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295168244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = -77.829079 kcal Electronic energy + Delta-G solvation = -29274.873185 eV Core-core repulsion = 25319.622686 eV Total energy + Delta-G solvation = -3955.250499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.24507 -39.62284 -38.44646 -38.24341 -37.42443 -37.00717 -33.77374 -33.70530 -32.94109 -30.12577 -28.61778 -27.75893 -27.30397 -27.23974 -25.05325 -24.61141 -22.05974 -21.41027 -20.43393 -19.75170 -19.13285 -18.47205 -18.05021 -17.47063 -17.22715 -16.75377 -16.66951 -16.43968 -16.15826 -15.48352 -15.33001 -14.97436 -14.85328 -14.52457 -14.38840 -14.34431 -13.96435 -13.78703 -13.54990 -13.40492 -13.16420 -13.09116 -13.06775 -12.96733 -12.84668 -12.63216 -12.40952 -12.31755 -12.23735 -12.16384 -12.03524 -11.82071 -11.64120 -11.42702 -10.76058 -10.61003 -10.41948 -10.27021 -9.16300 -8.07176 -6.25163 -1.02890 0.05246 0.11907 1.27726 1.42752 1.46205 1.54482 1.68606 2.41657 2.53524 2.74758 2.85558 3.11719 3.16052 3.24883 3.54235 3.72731 3.83917 3.86713 3.93483 3.96452 4.06118 4.14876 4.39456 4.44047 4.49564 4.54333 4.75211 4.77174 4.79119 4.82197 4.88636 4.91372 4.98660 5.03241 5.19140 5.26882 5.31546 5.43734 5.48845 5.61590 5.92509 5.98089 6.05472 6.29468 6.78584 6.92781 7.43307 8.92784 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.003938 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.158675 B = 7108.774392 C = 7800.924326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.078 3.922 3 H 0.076 0.924 4 C 0.059 3.941 5 N -0.943 5.943 6 S 2.598 3.402 7 O -0.969 6.969 8 O -0.967 6.967 9 C -0.577 4.577 10 C 0.072 3.928 11 C -0.158 4.158 12 C -0.162 4.162 13 C -0.518 4.518 14 H 0.063 0.937 15 C 0.022 3.978 16 N -0.905 5.905 17 Si 0.952 3.048 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.268 1.268 21 C 0.052 3.948 22 C -0.115 4.115 23 C -0.157 4.157 24 C 0.112 3.888 25 N -0.497 5.497 26 C 0.286 3.714 27 O -0.306 6.306 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.026 0.974 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.263 0.737 42 H 0.143 0.857 43 H 0.179 0.821 44 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.426 1.661 -14.754 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.020 3.980 3 H 0.094 0.906 4 C -0.064 4.064 5 N -0.768 5.768 6 S 2.700 3.300 7 O -0.959 6.959 8 O -0.957 6.957 9 C -0.710 4.710 10 C 0.069 3.931 11 C -0.216 4.216 12 C -0.219 4.219 13 C -0.557 4.557 14 H 0.081 0.919 15 C -0.178 4.178 16 N -0.543 5.543 17 Si 0.778 3.222 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.192 1.192 21 C -0.048 4.048 22 C -0.144 4.144 23 C -0.177 4.177 24 C -0.045 4.045 25 N -0.216 5.216 26 C 0.103 3.897 27 O -0.216 6.216 28 H 0.127 0.873 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.045 0.955 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.160 0.840 43 H 0.196 0.804 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.903 2.650 -15.013 18.179 hybrid contribution 1.039 -1.239 1.741 2.376 sum -8.864 1.411 -13.272 16.022 Atomic orbital electron populations 1.21853 0.87424 1.05034 1.05189 1.23119 0.98427 0.94698 0.81759 0.90600 1.22980 0.76557 1.04924 1.01978 1.56087 1.17400 1.83132 1.20165 1.05629 0.73257 0.78844 0.72312 1.93541 1.50516 1.73253 1.78618 1.93508 1.65392 1.73862 1.62963 1.30500 1.11148 1.19642 1.09753 1.17954 0.90511 0.96761 0.87827 1.22207 1.00935 0.96530 1.01962 1.22217 0.99665 0.97161 1.02904 1.21217 1.35072 0.91386 1.07988 0.91906 1.25621 0.95036 0.99848 0.97259 1.69932 1.35927 1.29697 1.18764 0.85635 0.78451 0.80574 0.77538 1.20443 1.21136 1.19211 1.18496 0.94459 1.06077 0.85723 1.21782 0.92215 0.98479 1.01887 1.22333 1.03551 1.00943 0.90874 1.23165 0.85975 0.94373 1.00988 1.66949 1.14953 1.15871 1.23876 1.19118 0.84989 0.97874 0.87679 1.85907 1.18281 1.73493 1.43933 0.87335 0.90042 0.90131 0.87205 0.85045 0.84139 0.84567 0.95465 0.90557 0.93683 0.93744 0.90792 0.94950 0.92773 0.83987 0.80386 0.77617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.58 71.98 0.69 -1.09 16 2 C 0.08 1.66 3.57 30.77 0.11 1.77 16 3 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.06 1.36 6.02 86.40 0.52 1.88 16 5 N -0.94 -28.17 3.25 -335.97 -1.09 -29.26 16 6 S 2.60 93.72 3.89 -56.49 -0.22 93.50 16 7 O -0.97 -39.13 12.93 -127.65 -1.65 -40.78 16 8 O -0.97 -37.73 14.11 -127.65 -1.80 -39.53 16 9 C -0.58 -21.27 4.99 71.98 0.36 -20.91 16 10 C 0.07 3.32 0.52 -52.93 -0.03 3.29 16 11 C -0.16 -7.51 7.62 71.98 0.55 -6.96 16 12 C -0.16 -7.68 7.73 71.98 0.56 -7.12 16 13 C -0.52 -25.94 8.01 25.60 0.20 -25.74 16 14 H 0.06 3.04 7.75 -2.91 -0.02 3.02 16 15 C 0.02 1.14 5.12 84.65 0.43 1.57 16 16 N -0.90 -48.39 9.36 21.45 0.20 -48.19 16 17 Si 0.95 40.81 29.54 68.60 2.03 42.84 16 18 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 21 C 0.05 1.57 6.24 38.18 0.24 1.81 16 22 C -0.11 -3.31 8.62 22.52 0.19 -3.12 16 23 C -0.16 -3.40 10.12 22.38 0.23 -3.17 16 24 C 0.11 2.32 11.16 84.64 0.94 3.27 16 25 N -0.50 -13.75 10.38 -308.18 -3.20 -16.95 16 26 C 0.29 8.50 7.58 84.89 0.64 9.14 16 27 O -0.31 -8.33 10.06 -91.60 -0.92 -9.25 16 28 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.13 2.80 6.81 -2.38 -0.02 2.78 16 33 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 34 H 0.14 4.55 7.32 -2.39 -0.02 4.53 16 35 H 0.03 1.23 5.96 -2.39 -0.01 1.21 16 36 H 0.08 3.98 5.98 -2.39 -0.01 3.97 16 37 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 3.85 6.05 -2.39 -0.01 3.84 16 40 H 0.03 1.46 5.47 -2.39 -0.01 1.44 16 41 H 0.26 13.47 8.31 -92.70 -0.77 12.70 16 42 H 0.14 4.37 5.03 -2.91 -0.01 4.36 16 43 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 44 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -68.23 351.64 0.01 -68.22 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 1.02 Total: 24.78 kcal Atomic # 6 Polarization: -51.01 SS G_CDS: 5.64 Total: -45.37 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -4.09 Total: -94.40 kcal Atomic # 8 Polarization: -85.19 SS G_CDS: -4.37 Total: -89.57 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 16 Polarization: 93.72 SS G_CDS: -0.22 Total: 93.50 kcal Total: -68.23 0.01 -68.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295168244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.610 kcal (2) G-P(sol) polarization free energy of solvation -68.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds