Wall clock time and date at job start Sat Apr 11 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47139 * 2 1 4 4 C 1.53006 * 109.47020 * 119.99647 * 2 1 3 5 5 C 1.50698 * 109.47051 * 185.00187 * 4 2 1 6 6 O 1.21247 * 120.00035 * 359.97438 * 5 4 2 7 7 C 1.47168 * 119.99712 * 180.02562 * 5 4 2 8 8 C 1.39854 * 120.17122 * 359.71917 * 7 5 4 9 9 C 1.37892 * 119.82094 * 179.80830 * 8 7 5 10 10 C 1.38403 * 120.17408 * 0.45505 * 9 8 7 11 11 C 1.38406 * 120.34968 * 359.77609 * 10 9 8 12 12 C 1.37893 * 120.17149 * 0.02562 * 11 10 9 13 13 N 1.46498 * 109.47038 * 239.99712 * 2 1 3 14 14 S 1.65596 * 119.99862 * 95.00650 * 13 2 1 15 15 O 1.42101 * 106.40045 * 311.45357 * 14 13 2 16 16 O 1.42106 * 106.40310 * 178.53630 * 14 13 2 17 17 N 1.65597 * 107.22389 * 64.99463 * 14 13 2 18 18 C 1.46506 * 119.99791 * 89.99756 * 17 14 13 19 19 C 1.46498 * 119.99910 * 270.27980 * 17 14 13 20 20 C 1.50703 * 109.46964 * 264.71709 * 19 17 14 21 21 H 1.08004 * 119.99711 * 0.02562 * 20 19 17 22 22 C 1.37871 * 119.99968 * 180.02562 * 20 19 17 23 23 N 1.31509 * 120.00248 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99858 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47477 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47250 * 120.00270 * 24 22 20 27 27 H 1.48506 * 109.47052 * 239.99610 * 24 22 20 28 28 H 1.08999 * 109.47385 * 300.00194 * 1 2 3 29 29 H 1.09006 * 109.47251 * 60.00128 * 1 2 3 30 30 H 1.09002 * 109.47139 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47162 * 305.00019 * 4 2 1 32 32 H 1.09004 * 109.46795 * 64.99778 * 4 2 1 33 33 H 1.07993 * 120.08995 * 0.02791 * 8 7 5 34 34 H 1.08001 * 119.91125 * 180.20985 * 9 8 7 35 35 H 1.07991 * 119.82595 * 179.76555 * 10 9 8 36 36 H 1.07996 * 119.91728 * 179.97438 * 11 10 9 37 37 H 1.07999 * 120.08648 * 179.97438 * 12 11 10 38 38 H 0.97000 * 120.00220 * 274.99792 * 13 2 1 39 39 H 1.08999 * 109.46892 * 90.00624 * 18 17 14 40 40 H 1.09000 * 109.46803 * 209.99797 * 18 17 14 41 41 H 1.09000 * 109.47214 * 330.00591 * 18 17 14 42 42 H 1.08990 * 109.47572 * 24.71903 * 19 17 14 43 43 H 1.09003 * 109.47280 * 144.72260 * 19 17 14 44 44 H 0.97000 * 120.00205 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.6148 1.3128 6 8 4.1448 -0.0213 0.4444 7 6 4.2767 -1.2324 2.4284 8 6 3.5844 -1.9137 3.4345 9 6 4.2805 -2.4931 4.4744 10 6 5.6598 -2.3935 4.5289 11 6 6.3518 -1.7168 3.5396 12 6 5.6705 -1.1355 2.4911 13 7 2.0183 -0.6907 -1.1961 14 16 2.4122 0.1771 -2.5504 15 8 1.3247 1.0592 -2.7922 16 8 2.8777 -0.7636 -3.5084 17 7 3.7097 1.1299 -2.1620 18 6 5.0720 0.6261 -2.3537 19 6 3.4953 2.4743 -1.6209 20 6 3.5556 3.4818 -2.7401 21 1 3.7353 3.1533 -3.7532 22 6 3.3815 4.8226 -2.4708 23 7 3.1632 5.2226 -1.2371 24 14 3.4556 6.0713 -3.8582 25 1 3.7121 5.3703 -5.1419 26 1 2.1630 6.7977 -3.9399 27 1 4.5512 7.0387 -3.5955 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -0.2616 2.1370 32 1 1.7515 -1.7715 1.2057 33 1 2.5078 -1.9890 3.3953 34 1 3.7475 -3.0225 5.2503 35 1 6.1990 -2.8461 5.3479 36 1 7.4281 -1.6430 3.5893 37 1 6.2118 -0.6074 1.7201 38 1 2.1109 -1.6562 -1.1948 39 1 5.4162 0.8817 -3.3558 40 1 5.7340 1.0790 -1.6156 41 1 5.0792 -0.4571 -2.2323 42 1 2.5174 2.5216 -1.1419 43 1 4.2702 2.6989 -0.8879 44 1 3.0411 6.1661 -1.0476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340056977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:25 Heat of formation + Delta-G solvation = -86.205433 kcal Electronic energy + Delta-G solvation = -28608.161111 eV Core-core repulsion = 24652.547386 eV Total energy + Delta-G solvation = -3955.613725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.16951 -38.40416 -36.57501 -35.97082 -35.24422 -34.98231 -32.31152 -32.01547 -31.17747 -30.25277 -28.03746 -27.60045 -24.87888 -24.05444 -22.74042 -22.13086 -21.38702 -19.78885 -18.96184 -17.45400 -17.23903 -16.49057 -16.16766 -16.07811 -15.89070 -15.49036 -15.05881 -14.65594 -14.50887 -14.24798 -14.02372 -13.74294 -13.26245 -13.19799 -12.98781 -12.83653 -12.74769 -12.19351 -12.08975 -11.96731 -11.91215 -11.84337 -11.48950 -11.34038 -11.31446 -11.16046 -11.01712 -11.01066 -10.73022 -10.55463 -10.35485 -9.90643 -9.67607 -9.58613 -9.24975 -9.20084 -9.14024 -8.34428 -7.81307 -5.96834 -3.99500 0.53729 1.12578 1.43861 2.40153 3.36654 3.43758 3.50103 3.61257 3.68999 3.88778 4.30572 4.52915 4.54901 4.66916 4.75365 4.78170 5.01253 5.07421 5.14498 5.23378 5.27274 5.36579 5.48340 5.54592 5.59757 5.63238 5.67103 5.74526 5.84987 5.97659 6.07787 6.17348 6.23287 6.35106 6.37385 6.45045 6.53898 6.63874 6.75827 7.28861 7.42270 7.59991 7.62744 7.81530 8.02638 8.34317 9.03504 9.64869 11.11511 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012740 B = 0.003804 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.255603 B = 7359.478407 C = 8169.272796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.160 3.840 3 H 0.099 0.901 4 C -0.169 4.169 5 C 0.381 3.619 6 O -0.412 6.412 7 C -0.161 4.161 8 C -0.078 4.078 9 C -0.135 4.135 10 C -0.096 4.096 11 C -0.133 4.133 12 C -0.062 4.062 13 N -1.126 6.126 14 S 2.784 3.216 15 O -0.968 6.968 16 O -1.005 7.005 17 N -0.983 5.983 18 C 0.124 3.876 19 C 0.265 3.735 20 C -0.524 4.524 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.897 5.897 24 Si 0.895 3.105 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.285 1.285 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.404 0.596 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.032 0.968 43 H 0.034 0.966 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.902 -17.368 14.489 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.052 3.948 3 H 0.117 0.883 4 C -0.208 4.208 5 C 0.255 3.745 6 O -0.284 6.284 7 C -0.161 4.161 8 C -0.096 4.096 9 C -0.153 4.153 10 C -0.114 4.114 11 C -0.151 4.151 12 C -0.080 4.080 13 N -0.883 5.883 14 S 2.791 3.209 15 O -0.951 6.951 16 O -0.989 6.989 17 N -0.825 5.825 18 C -0.023 4.023 19 C 0.143 3.857 20 C -0.563 4.563 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.537 5.537 24 Si 0.722 3.278 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.211 1.211 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.235 0.765 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.736 -16.698 13.273 21.344 hybrid contribution 0.300 0.285 -0.015 0.414 sum 1.036 -16.413 13.258 21.125 Atomic orbital electron populations 1.22311 0.94831 1.02109 1.03614 1.20554 0.94008 0.97035 0.83157 0.88301 1.22398 0.94471 1.03434 1.00524 1.22434 0.91112 0.77217 0.83722 1.90679 1.71045 1.30900 1.35748 1.20676 0.94707 1.02718 0.98042 1.21470 1.00140 0.95048 0.92962 1.21130 0.94455 1.00903 0.98858 1.21400 0.94553 0.97282 0.98152 1.21187 1.00358 0.98784 0.94756 1.21524 0.93366 0.95669 0.97441 1.56292 1.82523 1.18631 1.30821 1.01863 0.73720 0.72458 0.72844 1.93612 1.52830 1.65025 1.83628 1.93525 1.82319 1.64220 1.58858 1.57345 1.17709 1.27019 1.80442 1.21020 0.83933 0.96730 1.00588 1.18964 0.97061 0.75594 0.94061 1.21606 1.48451 0.91551 0.94714 0.92266 1.24909 0.95131 0.98345 0.95670 1.69931 1.49551 1.15789 1.18435 0.86496 0.77543 0.81176 0.82537 1.19693 1.20901 1.21084 0.91641 0.90516 0.92529 0.87388 0.88136 0.85112 0.85618 0.85838 0.85525 0.84639 0.76493 0.94036 0.91665 0.93522 0.95006 0.94796 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 9.52 37.16 0.35 -1.76 16 2 C 0.16 2.23 2.36 -67.93 -0.16 2.07 16 3 H 0.10 1.71 6.01 -51.93 -0.31 1.39 16 4 C -0.17 -1.67 3.92 -27.88 -0.11 -1.78 16 5 C 0.38 4.69 6.98 -30.69 -0.21 4.48 16 6 O -0.41 -6.57 13.62 5.59 0.08 -6.49 16 7 C -0.16 -1.71 5.87 -105.06 -0.62 -2.33 16 8 C -0.08 -0.63 9.47 -39.10 -0.37 -1.00 16 9 C -0.14 -0.98 10.03 -39.65 -0.40 -1.38 16 10 C -0.10 -0.72 10.04 -39.46 -0.40 -1.11 16 11 C -0.13 -1.16 10.03 -39.65 -0.40 -1.56 16 12 C -0.06 -0.67 9.60 -39.10 -0.38 -1.04 16 13 N -1.13 -17.22 4.67 -4.89 -0.02 -17.24 16 14 S 2.78 58.31 5.96 -107.50 -0.64 57.67 16 15 O -0.97 -23.73 16.37 -57.17 -0.94 -24.66 16 16 O -1.00 -22.38 17.21 -57.17 -0.98 -23.37 16 17 N -0.98 -21.78 2.44 -123.05 -0.30 -22.08 16 18 C 0.12 2.41 9.43 59.85 0.56 2.98 16 19 C 0.27 6.89 4.82 -5.19 -0.03 6.87 16 20 C -0.52 -15.23 9.38 -34.44 -0.32 -15.55 16 21 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 24 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.18 7.64 -51.93 -0.40 0.78 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.11 0.83 8.08 -51.93 -0.42 0.41 16 32 H 0.10 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.13 0.74 7.05 -52.49 -0.37 0.37 16 34 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.14 1.55 7.65 -52.49 -0.40 1.15 16 38 H 0.40 5.01 8.84 -34.47 -0.30 4.70 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.22 7.94 -51.93 -0.41 0.81 16 41 H 0.05 0.80 7.79 -51.93 -0.40 0.40 16 42 H 0.03 0.87 6.18 -51.93 -0.32 0.55 16 43 H 0.03 0.92 7.96 -51.93 -0.41 0.50 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -36.49 379.27 -10.20 -46.69 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.26 Total: 1.70 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -2.56 Total: -9.45 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: 0.41 Total: -65.24 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -1.84 Total: -54.52 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 16 Polarization: 58.31 SS G_CDS: -0.64 Total: 57.67 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.49 -10.20 -46.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340056977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.519 kcal (2) G-P(sol) polarization free energy of solvation -36.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds