Wall clock time and date at job start Sat Apr 11 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47139 * 2 1 4 4 C 1.53006 * 109.47020 * 119.99647 * 2 1 3 5 5 C 1.50698 * 109.47051 * 185.00187 * 4 2 1 6 6 O 1.21247 * 120.00035 * 359.97438 * 5 4 2 7 7 C 1.47168 * 119.99712 * 180.02562 * 5 4 2 8 8 C 1.39854 * 120.17122 * 359.71917 * 7 5 4 9 9 C 1.37892 * 119.82094 * 179.80830 * 8 7 5 10 10 C 1.38403 * 120.17408 * 0.45505 * 9 8 7 11 11 C 1.38406 * 120.34968 * 359.77609 * 10 9 8 12 12 C 1.37893 * 120.17149 * 0.02562 * 11 10 9 13 13 N 1.46498 * 109.47038 * 239.99712 * 2 1 3 14 14 S 1.65596 * 119.99862 * 95.00650 * 13 2 1 15 15 O 1.42101 * 106.40045 * 311.45357 * 14 13 2 16 16 O 1.42106 * 106.40310 * 178.53630 * 14 13 2 17 17 N 1.65597 * 107.22389 * 64.99463 * 14 13 2 18 18 C 1.46506 * 119.99791 * 89.99756 * 17 14 13 19 19 C 1.46498 * 119.99910 * 270.27980 * 17 14 13 20 20 C 1.50703 * 109.46964 * 264.71709 * 19 17 14 21 21 H 1.08004 * 119.99711 * 0.02562 * 20 19 17 22 22 C 1.37871 * 119.99968 * 180.02562 * 20 19 17 23 23 N 1.31509 * 120.00248 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99858 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47477 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47250 * 120.00270 * 24 22 20 27 27 H 1.48506 * 109.47052 * 239.99610 * 24 22 20 28 28 H 1.08999 * 109.47385 * 300.00194 * 1 2 3 29 29 H 1.09006 * 109.47251 * 60.00128 * 1 2 3 30 30 H 1.09002 * 109.47139 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47162 * 305.00019 * 4 2 1 32 32 H 1.09004 * 109.46795 * 64.99778 * 4 2 1 33 33 H 1.07993 * 120.08995 * 0.02791 * 8 7 5 34 34 H 1.08001 * 119.91125 * 180.20985 * 9 8 7 35 35 H 1.07991 * 119.82595 * 179.76555 * 10 9 8 36 36 H 1.07996 * 119.91728 * 179.97438 * 11 10 9 37 37 H 1.07999 * 120.08648 * 179.97438 * 12 11 10 38 38 H 0.97000 * 120.00220 * 274.99792 * 13 2 1 39 39 H 1.08999 * 109.46892 * 90.00624 * 18 17 14 40 40 H 1.09000 * 109.46803 * 209.99797 * 18 17 14 41 41 H 1.09000 * 109.47214 * 330.00591 * 18 17 14 42 42 H 1.08990 * 109.47572 * 24.71903 * 19 17 14 43 43 H 1.09003 * 109.47280 * 144.72260 * 19 17 14 44 44 H 0.97000 * 120.00205 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.6148 1.3128 6 8 4.1448 -0.0213 0.4444 7 6 4.2767 -1.2324 2.4284 8 6 3.5844 -1.9137 3.4345 9 6 4.2805 -2.4931 4.4744 10 6 5.6598 -2.3935 4.5289 11 6 6.3518 -1.7168 3.5396 12 6 5.6705 -1.1355 2.4911 13 7 2.0183 -0.6907 -1.1961 14 16 2.4122 0.1771 -2.5504 15 8 1.3247 1.0592 -2.7922 16 8 2.8777 -0.7636 -3.5084 17 7 3.7097 1.1299 -2.1620 18 6 5.0720 0.6261 -2.3537 19 6 3.4953 2.4743 -1.6209 20 6 3.5556 3.4818 -2.7401 21 1 3.7353 3.1533 -3.7532 22 6 3.3815 4.8226 -2.4708 23 7 3.1632 5.2226 -1.2371 24 14 3.4556 6.0713 -3.8582 25 1 3.7121 5.3703 -5.1419 26 1 2.1630 6.7977 -3.9399 27 1 4.5512 7.0387 -3.5955 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -0.2616 2.1370 32 1 1.7515 -1.7715 1.2057 33 1 2.5078 -1.9890 3.3953 34 1 3.7475 -3.0225 5.2503 35 1 6.1990 -2.8461 5.3479 36 1 7.4281 -1.6430 3.5893 37 1 6.2118 -0.6074 1.7201 38 1 2.1109 -1.6562 -1.1948 39 1 5.4162 0.8817 -3.3558 40 1 5.7340 1.0790 -1.6156 41 1 5.0792 -0.4571 -2.2323 42 1 2.5174 2.5216 -1.1419 43 1 4.2702 2.6989 -0.8879 44 1 3.0411 6.1661 -1.0476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340056977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:24 Heat of formation + Delta-G solvation = -112.201288 kcal Electronic energy + Delta-G solvation = -28609.288375 eV Core-core repulsion = 24652.547386 eV Total energy + Delta-G solvation = -3956.740990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.00732 -39.18278 -38.27769 -37.22999 -37.08316 -36.79775 -34.48331 -32.81611 -31.81210 -31.33372 -29.63959 -28.92148 -26.76776 -24.82320 -24.16474 -23.40684 -22.38582 -20.69575 -20.46465 -19.04808 -18.25924 -18.21832 -18.13186 -17.42880 -16.74539 -16.62620 -16.35638 -16.19253 -15.56529 -15.24786 -15.05224 -14.96337 -14.91095 -14.37395 -14.24576 -14.08256 -13.84943 -13.82167 -13.48115 -13.32424 -13.22985 -13.10376 -13.02070 -12.95176 -12.74697 -12.52033 -12.46767 -12.43591 -12.42245 -11.96938 -11.92150 -11.80726 -11.64943 -10.73613 -10.56966 -10.32467 -9.87356 -9.84471 -9.68391 -8.19109 -6.31128 -0.22971 -0.17786 0.49958 1.36659 1.38632 1.51137 1.61277 2.10102 2.40418 2.70842 2.95211 3.05722 3.10458 3.50214 3.75308 3.94023 4.06255 4.11353 4.17542 4.23036 4.29439 4.40642 4.52938 4.55786 4.71882 4.73819 4.75038 4.80555 4.85653 4.96272 5.03410 5.05743 5.14479 5.21437 5.31191 5.42182 5.45453 5.53953 5.57193 5.58118 5.72288 5.93166 6.03804 6.14361 6.27012 6.75022 6.78330 7.37174 8.88255 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012740 B = 0.003804 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.255603 B = 7359.478407 C = 8169.272796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.152 3.848 3 H 0.058 0.942 4 C -0.160 4.160 5 C 0.377 3.623 6 O -0.464 6.464 7 C -0.182 4.182 8 C -0.072 4.072 9 C -0.135 4.135 10 C -0.093 4.093 11 C -0.143 4.143 12 C -0.089 4.089 13 N -1.105 6.105 14 S 2.797 3.203 15 O -1.008 7.008 16 O -1.020 7.020 17 N -0.989 5.989 18 C 0.123 3.877 19 C 0.289 3.711 20 C -0.550 4.550 21 H 0.048 0.952 22 C 0.013 3.987 23 N -0.923 5.923 24 Si 0.957 3.043 25 H -0.272 1.272 26 H -0.276 1.276 27 H -0.269 1.269 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.089 0.911 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.138 0.862 37 H 0.112 0.888 38 H 0.421 0.579 39 H 0.037 0.963 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.014 0.986 43 H 0.015 0.985 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.029 -19.310 16.639 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.045 3.955 3 H 0.076 0.924 4 C -0.198 4.198 5 C 0.255 3.745 6 O -0.339 6.339 7 C -0.183 4.183 8 C -0.090 4.090 9 C -0.153 4.153 10 C -0.111 4.111 11 C -0.161 4.161 12 C -0.107 4.107 13 N -0.868 5.868 14 S 2.805 3.195 15 O -0.991 6.991 16 O -1.004 7.004 17 N -0.830 5.830 18 C -0.023 4.023 19 C 0.166 3.834 20 C -0.590 4.590 21 H 0.066 0.934 22 C -0.187 4.187 23 N -0.563 5.563 24 Si 0.781 3.219 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.194 1.194 28 H 0.107 0.893 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.169 0.831 36 H 0.156 0.844 37 H 0.130 0.870 38 H 0.257 0.743 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.126 -18.672 15.431 24.223 hybrid contribution 0.586 0.788 -0.546 1.124 sum 0.461 -17.884 14.885 23.273 Atomic orbital electron populations 1.22289 0.93299 1.04009 1.02934 1.20710 0.95150 0.95522 0.84097 0.92425 1.22449 0.92669 1.05478 0.99205 1.23008 0.92312 0.75850 0.83340 1.90671 1.72129 1.33325 1.37778 1.20659 0.94569 1.04347 0.98765 1.21814 1.01657 0.93624 0.91920 1.21569 0.94468 1.00159 0.99074 1.21793 0.95184 0.96083 0.98030 1.21383 1.01156 0.98928 0.94650 1.21535 0.94101 0.96981 0.98093 1.55702 1.81880 1.19210 1.29975 1.01194 0.72877 0.72021 0.73412 1.93560 1.54180 1.66612 1.84792 1.93492 1.82455 1.64109 1.60375 1.57240 1.19167 1.26169 1.80455 1.21110 0.82822 0.98025 1.00325 1.18424 0.95303 0.77015 0.92696 1.21920 1.49202 0.92938 0.94922 0.93408 1.25732 0.94532 1.00182 0.98205 1.70021 1.49659 1.16549 1.20054 0.85536 0.78159 0.78802 0.79372 1.19666 1.20145 1.19443 0.89334 0.94245 0.89262 0.84216 0.84103 0.82060 0.82436 0.83147 0.84449 0.87029 0.74348 0.94407 0.91552 0.91296 0.96767 0.96699 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 9.52 71.98 0.69 -3.19 16 2 C 0.15 4.15 2.36 44.99 0.11 4.25 16 3 H 0.06 2.09 6.01 -2.39 -0.01 2.07 16 4 C -0.16 -2.73 3.92 29.85 0.12 -2.61 16 5 C 0.38 9.10 6.98 28.03 0.20 9.30 16 6 O -0.46 -15.48 13.62 -2.93 -0.04 -15.52 16 7 C -0.18 -3.70 5.87 -20.15 -0.12 -3.82 16 8 C -0.07 -0.92 9.47 22.58 0.21 -0.71 16 9 C -0.14 -1.42 10.03 22.23 0.22 -1.20 16 10 C -0.09 -1.12 10.04 22.35 0.22 -0.89 16 11 C -0.14 -2.38 10.03 22.23 0.22 -2.16 16 12 C -0.09 -1.97 9.60 22.58 0.22 -1.76 16 13 N -1.10 -33.51 4.67 -169.38 -0.79 -34.30 16 14 S 2.80 120.67 5.96 -56.49 -0.34 120.33 16 15 O -1.01 -51.57 16.37 -128.00 -2.10 -53.67 16 16 O -1.02 -45.94 17.21 -128.00 -2.20 -48.14 16 17 N -0.99 -45.89 2.44 -543.22 -1.32 -47.21 16 18 C 0.12 4.99 9.43 127.77 1.20 6.19 16 19 C 0.29 15.87 4.82 85.63 0.41 16.28 16 20 C -0.55 -33.26 9.38 25.60 0.24 -33.02 16 21 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 22 C 0.01 0.76 5.46 84.65 0.46 1.22 16 23 N -0.92 -56.07 13.29 21.44 0.28 -55.79 16 24 Si 0.96 46.66 29.54 68.60 2.03 48.68 16 25 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 28 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.04 1.22 7.64 -2.38 -0.02 1.20 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.14 1.58 8.08 -2.39 -0.02 1.56 16 32 H 0.14 1.31 8.09 -2.38 -0.02 1.29 16 33 H 0.16 0.97 7.05 -2.91 -0.02 0.95 16 34 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 35 H 0.15 0.96 8.06 -2.92 -0.02 0.94 16 36 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.11 2.88 7.65 -2.91 -0.02 2.86 16 38 H 0.42 9.80 8.84 -96.75 -0.85 8.94 16 39 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 2.63 7.94 -2.39 -0.02 2.61 16 41 H 0.07 2.44 7.79 -2.39 -0.02 2.42 16 42 H 0.01 0.83 6.18 -2.39 -0.01 0.82 16 43 H 0.01 0.86 7.96 -2.39 -0.02 0.84 16 44 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -83.55 379.27 0.08 -83.47 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.16 Total: 14.26 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 4.41 Total: -12.12 kcal Atomic # 7 Polarization: -135.47 SS G_CDS: -1.83 Total: -137.30 kcal Atomic # 8 Polarization: -112.98 SS G_CDS: -4.34 Total: -117.32 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Atomic # 16 Polarization: 120.67 SS G_CDS: -0.34 Total: 120.33 kcal Total: -83.55 0.08 -83.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340056977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.733 kcal (2) G-P(sol) polarization free energy of solvation -83.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds