Wall clock time and date at job start Sat Apr 11 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47162 * 2 1 4 4 S 1.81407 * 109.47114 * 179.97438 * 3 2 1 5 5 O 1.42101 * 110.54183 * 73.36055 * 4 3 2 6 6 O 1.42093 * 110.54134 * 296.60803 * 4 3 2 7 7 N 1.65600 * 104.44851 * 184.98187 * 4 3 2 8 8 C 1.39710 * 120.00455 * 298.78780 * 7 4 3 9 9 C 1.39023 * 120.00122 * 313.82184 * 8 7 4 10 10 C 1.38202 * 120.21937 * 180.02562 * 9 8 7 11 11 C 1.38028 * 120.22536 * 359.97438 * 10 9 8 12 12 C 1.39564 * 120.00768 * 359.97438 * 11 10 9 13 13 C 1.47868 * 120.11163 * 180.02562 * 12 11 10 14 14 O 1.21548 * 120.00145 * 179.97438 * 13 12 11 15 15 N 1.34779 * 119.99645 * 359.97397 * 13 12 11 16 16 C 1.46506 * 119.99839 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.46856 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.46953 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99831 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00411 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99537 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00146 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46952 * 90.00536 * 22 20 18 24 24 H 1.48500 * 109.46776 * 210.00049 * 22 20 18 25 25 H 1.48501 * 109.47202 * 329.99948 * 22 20 18 26 26 C 1.38635 * 120.00699 * 133.79370 * 8 7 4 27 27 H 1.08994 * 109.47131 * 300.00462 * 1 2 3 28 28 H 1.09000 * 109.46621 * 60.00528 * 1 2 3 29 29 H 1.08992 * 109.47040 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47618 * 239.99744 * 2 1 3 31 31 H 1.09001 * 109.47097 * 119.99243 * 2 1 3 32 32 H 1.08992 * 109.47793 * 59.99312 * 3 2 1 33 33 H 1.09000 * 109.46921 * 299.99288 * 3 2 1 34 34 H 0.97001 * 119.99411 * 118.78392 * 7 4 3 35 35 H 1.07999 * 119.88687 * 0.02562 * 9 8 7 36 36 H 1.07994 * 119.88646 * 179.97438 * 10 9 8 37 37 H 1.07999 * 119.99366 * 179.97438 * 11 10 9 38 38 H 0.96998 * 120.00071 * 0.02562 * 15 13 12 39 39 H 1.08992 * 109.46942 * 300.00459 * 16 15 13 40 40 H 1.08998 * 109.46449 * 60.00721 * 16 15 13 41 41 H 1.09006 * 109.47259 * 299.99938 * 17 16 15 42 42 H 1.08995 * 109.47519 * 60.00119 * 17 16 15 43 43 H 0.96996 * 119.99765 * 179.97438 * 21 20 18 44 44 H 1.08005 * 120.11479 * 0.27966 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8541 1.4425 0.0008 5 8 4.3532 1.0612 -1.2739 6 8 4.3522 0.8467 1.1907 7 7 4.2672 3.0400 0.1400 8 6 3.8778 3.9508 -0.8453 9 6 4.0470 3.6361 -2.1888 10 6 3.6638 4.5339 -3.1672 11 6 3.1101 5.7487 -2.8170 12 6 2.9348 6.0739 -1.4711 13 6 2.3413 7.3745 -1.0934 14 8 2.1892 7.6555 0.0793 15 7 1.9690 8.2484 -2.0496 16 6 1.3804 9.5368 -1.6754 17 6 1.0494 10.3326 -2.9395 18 6 0.4445 11.6581 -2.5546 19 1 0.3101 11.9080 -1.5125 20 6 0.0637 12.5522 -3.5327 21 7 0.2279 12.2479 -4.8016 22 14 -0.6867 14.1949 -3.0555 23 1 0.3908 15.2050 -2.9008 24 1 -1.6292 14.6350 -4.1154 25 1 -1.4183 14.0506 -1.7713 26 6 3.3219 5.1682 -0.4834 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6767 1.9564 0.8898 33 1 1.6768 1.9562 -0.8901 34 1 4.7796 3.3435 0.9057 35 1 4.4794 2.6869 -2.4689 36 1 3.7982 4.2840 -4.2092 37 1 2.8123 6.4477 -3.5846 38 1 2.0900 8.0240 -2.9854 39 1 0.4679 9.3671 -1.1039 40 1 2.0906 10.0978 -1.0680 41 1 1.9617 10.5023 -3.5113 42 1 0.3392 9.7713 -3.5466 43 1 -0.0403 12.8767 -5.4897 44 1 3.1933 5.4164 0.5598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345150945.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:44 Heat of formation + Delta-G solvation = -98.575081 kcal Electronic energy + Delta-G solvation = -26364.822513 eV Core-core repulsion = 22408.672400 eV Total energy + Delta-G solvation = -3956.150113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.29653 -38.70766 -37.55585 -36.48127 -35.42417 -35.36285 -34.99001 -32.92153 -31.43194 -30.02184 -28.99006 -28.22868 -25.27746 -23.65889 -22.74531 -22.52508 -21.14698 -20.61483 -19.66625 -18.47791 -18.09941 -17.00258 -16.77364 -16.58606 -16.21882 -15.88172 -15.63852 -15.18135 -15.03295 -14.64058 -14.50803 -14.10653 -14.03937 -13.55547 -13.37569 -13.20752 -13.11733 -13.07041 -12.80217 -12.60268 -12.44784 -12.33578 -11.97311 -11.77606 -11.69788 -11.47147 -11.24669 -11.19768 -11.07992 -10.83113 -10.68585 -10.40072 -9.94715 -9.56852 -9.28888 -9.26125 -8.80339 -8.60637 -8.41527 -6.13746 -4.16702 -0.33372 0.65450 1.01454 2.08916 2.85461 3.18526 3.26650 3.32875 3.36239 3.52231 3.67553 3.72549 3.96163 4.21583 4.37872 4.48171 4.56452 4.65431 4.73342 4.80271 4.94124 4.99807 5.07078 5.08601 5.23529 5.24755 5.41345 5.44185 5.59785 5.62545 5.67792 5.95443 6.06270 6.15989 6.27181 6.28264 6.37028 6.65570 6.66790 6.79057 7.45298 7.55096 7.83763 7.88162 8.21841 8.49229 8.89034 9.48384 10.97833 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021615 B = 0.001947 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.107756 B =14377.433257 C =14639.007762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.625 4.625 4 S 2.605 3.395 5 O -0.948 6.948 6 O -0.952 6.952 7 N -1.057 6.057 8 C 0.125 3.875 9 C -0.133 4.133 10 C -0.103 4.103 11 C -0.092 4.092 12 C -0.109 4.109 13 C 0.547 3.453 14 O -0.545 6.545 15 N -0.714 5.714 16 C 0.121 3.879 17 C 0.012 3.988 18 C -0.522 4.522 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.074 4.074 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.427 0.573 35 H 0.160 0.840 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.398 0.602 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.262 0.738 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.531 -25.489 5.700 26.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.755 4.755 4 S 2.701 3.299 5 O -0.938 6.938 6 O -0.942 6.942 7 N -0.808 5.808 8 C 0.029 3.971 9 C -0.155 4.155 10 C -0.121 4.121 11 C -0.111 4.111 12 C -0.113 4.113 13 C 0.333 3.667 14 O -0.425 6.425 15 N -0.363 5.363 16 C -0.001 4.001 17 C -0.025 4.025 18 C -0.561 4.561 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.097 4.097 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.265 0.735 35 H 0.177 0.823 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.233 0.767 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.922 -26.001 6.200 27.378 hybrid contribution -0.728 1.529 0.049 1.694 sum 5.193 -24.472 6.250 25.786 Atomic orbital electron populations 1.21722 0.93509 1.02470 1.02767 1.21273 0.99066 0.91478 1.03667 1.30585 1.25895 1.06473 1.12565 1.05333 0.77889 0.72159 0.74568 1.93568 1.77161 1.80636 1.42419 1.93623 1.78202 1.74186 1.48189 1.53296 1.67709 1.27157 1.32619 1.17267 1.00334 0.91690 0.87782 1.22095 0.99835 1.02441 0.91088 1.21046 0.98121 0.93093 0.99872 1.21529 0.97303 0.97074 0.95238 1.20019 1.02137 0.95403 0.93704 1.18223 0.78756 0.83809 0.85953 1.90749 1.55816 1.77804 1.18105 1.46290 1.61985 1.18803 1.09249 1.21793 0.96851 0.80939 1.00538 1.19334 0.97352 0.94645 0.91217 1.21034 1.41211 1.00663 0.93190 0.92219 1.24998 0.95696 0.98693 0.94905 1.69949 1.47637 1.36275 0.99381 0.86502 0.79109 0.83613 0.78272 1.20541 1.21155 1.19730 1.21262 0.95563 0.92234 1.00641 0.92067 0.91988 0.91790 0.90296 0.90152 0.84433 0.84459 0.73546 0.82289 0.84453 0.84764 0.76726 0.92294 0.92278 0.95867 0.95868 0.92804 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.64 5.94 -26.73 -0.16 -0.80 16 3 C -0.62 -3.59 5.93 37.16 0.22 -3.37 16 4 S 2.61 20.75 5.35 -107.50 -0.58 20.17 16 5 O -0.95 -9.78 15.17 -57.54 -0.87 -10.65 16 6 O -0.95 -10.17 18.08 -57.54 -1.04 -11.21 16 7 N -1.06 -8.12 5.67 32.39 0.18 -7.94 16 8 C 0.12 1.17 6.01 -83.83 -0.50 0.67 16 9 C -0.13 -1.24 9.23 -39.30 -0.36 -1.60 16 10 C -0.10 -0.90 10.02 -39.67 -0.40 -1.29 16 11 C -0.09 -0.93 9.54 -39.16 -0.37 -1.31 16 12 C -0.11 -1.37 5.87 -104.99 -0.62 -1.98 16 13 C 0.55 8.98 7.77 -12.32 -0.10 8.89 16 14 O -0.55 -10.79 16.35 5.32 0.09 -10.70 16 15 N -0.71 -11.89 5.51 -61.24 -0.34 -12.23 16 16 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 17 C 0.01 0.29 5.09 -27.89 -0.14 0.14 16 18 C -0.52 -14.15 9.11 -34.44 -0.31 -14.47 16 19 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 22 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.07 -0.83 9.52 -38.97 -0.37 -1.20 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.14 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.14 0.70 8.14 -51.92 -0.42 0.27 16 34 H 0.43 2.60 8.92 -34.46 -0.31 2.29 16 35 H 0.16 1.47 5.62 -52.49 -0.29 1.17 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.13 1.18 6.40 -52.49 -0.34 0.84 16 38 H 0.40 5.62 6.50 -40.82 -0.27 5.35 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.14 1.57 7.65 -52.48 -0.40 1.17 16 LS Contribution 384.04 15.07 5.79 5.79 Total: -1.00 -35.21 384.04 -10.14 -45.35 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.22 Total: 3.00 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -2.87 Total: -12.73 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.58 Total: -45.02 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -1.83 Total: -32.57 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 20.75 SS G_CDS: -0.58 Total: 20.17 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.21 -10.14 -45.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345150945.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.224 kcal (2) G-P(sol) polarization free energy of solvation -35.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds