Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47162 * 2 1 4 4 S 1.81407 * 109.47114 * 179.97438 * 3 2 1 5 5 O 1.42101 * 110.54183 * 73.36055 * 4 3 2 6 6 O 1.42093 * 110.54134 * 296.60803 * 4 3 2 7 7 N 1.65600 * 104.44851 * 184.98187 * 4 3 2 8 8 C 1.39710 * 120.00455 * 298.78780 * 7 4 3 9 9 C 1.39023 * 120.00122 * 313.82184 * 8 7 4 10 10 C 1.38202 * 120.21937 * 180.02562 * 9 8 7 11 11 C 1.38028 * 120.22536 * 359.97438 * 10 9 8 12 12 C 1.39564 * 120.00768 * 359.97438 * 11 10 9 13 13 C 1.47868 * 120.11163 * 180.02562 * 12 11 10 14 14 O 1.21548 * 120.00145 * 179.97438 * 13 12 11 15 15 N 1.34779 * 119.99645 * 359.97397 * 13 12 11 16 16 C 1.46506 * 119.99839 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.46856 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.46953 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99831 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00411 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99537 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00146 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46952 * 90.00536 * 22 20 18 24 24 H 1.48500 * 109.46776 * 210.00049 * 22 20 18 25 25 H 1.48501 * 109.47202 * 329.99948 * 22 20 18 26 26 C 1.38635 * 120.00699 * 133.79370 * 8 7 4 27 27 H 1.08994 * 109.47131 * 300.00462 * 1 2 3 28 28 H 1.09000 * 109.46621 * 60.00528 * 1 2 3 29 29 H 1.08992 * 109.47040 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47618 * 239.99744 * 2 1 3 31 31 H 1.09001 * 109.47097 * 119.99243 * 2 1 3 32 32 H 1.08992 * 109.47793 * 59.99312 * 3 2 1 33 33 H 1.09000 * 109.46921 * 299.99288 * 3 2 1 34 34 H 0.97001 * 119.99411 * 118.78392 * 7 4 3 35 35 H 1.07999 * 119.88687 * 0.02562 * 9 8 7 36 36 H 1.07994 * 119.88646 * 179.97438 * 10 9 8 37 37 H 1.07999 * 119.99366 * 179.97438 * 11 10 9 38 38 H 0.96998 * 120.00071 * 0.02562 * 15 13 12 39 39 H 1.08992 * 109.46942 * 300.00459 * 16 15 13 40 40 H 1.08998 * 109.46449 * 60.00721 * 16 15 13 41 41 H 1.09006 * 109.47259 * 299.99938 * 17 16 15 42 42 H 1.08995 * 109.47519 * 60.00119 * 17 16 15 43 43 H 0.96996 * 119.99765 * 179.97438 * 21 20 18 44 44 H 1.08005 * 120.11479 * 0.27966 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8541 1.4425 0.0008 5 8 4.3532 1.0612 -1.2739 6 8 4.3522 0.8467 1.1907 7 7 4.2672 3.0400 0.1400 8 6 3.8778 3.9508 -0.8453 9 6 4.0470 3.6361 -2.1888 10 6 3.6638 4.5339 -3.1672 11 6 3.1101 5.7487 -2.8170 12 6 2.9348 6.0739 -1.4711 13 6 2.3413 7.3745 -1.0934 14 8 2.1892 7.6555 0.0793 15 7 1.9690 8.2484 -2.0496 16 6 1.3804 9.5368 -1.6754 17 6 1.0494 10.3326 -2.9395 18 6 0.4445 11.6581 -2.5546 19 1 0.3101 11.9080 -1.5125 20 6 0.0637 12.5522 -3.5327 21 7 0.2279 12.2479 -4.8016 22 14 -0.6867 14.1949 -3.0555 23 1 0.3908 15.2050 -2.9008 24 1 -1.6292 14.6350 -4.1154 25 1 -1.4183 14.0506 -1.7713 26 6 3.3219 5.1682 -0.4834 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6767 1.9564 0.8898 33 1 1.6768 1.9562 -0.8901 34 1 4.7796 3.3435 0.9057 35 1 4.4794 2.6869 -2.4689 36 1 3.7982 4.2840 -4.2092 37 1 2.8123 6.4477 -3.5846 38 1 2.0900 8.0240 -2.9854 39 1 0.4679 9.3671 -1.1039 40 1 2.0906 10.0978 -1.0680 41 1 1.9617 10.5023 -3.5113 42 1 0.3392 9.7713 -3.5466 43 1 -0.0403 12.8767 -5.4897 44 1 3.1933 5.4164 0.5598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345150945.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = -123.741721 kcal Electronic energy + Delta-G solvation = -26365.913821 eV Core-core repulsion = 22408.672400 eV Total energy + Delta-G solvation = -3957.241420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -41.33646 -39.81531 -38.30203 -37.21287 -36.65232 -36.13862 -35.83249 -34.81752 -32.46129 -31.46131 -30.03789 -28.67121 -26.98449 -24.88975 -23.56786 -23.00190 -22.79752 -21.74686 -20.45594 -19.42974 -18.81711 -18.50747 -17.69908 -17.50571 -17.19571 -16.82560 -16.66211 -16.49994 -16.37326 -15.82230 -15.67811 -14.96325 -14.84124 -14.72662 -14.51015 -14.28194 -14.12155 -13.69202 -13.65509 -13.51203 -13.31792 -13.25740 -13.21340 -12.94055 -12.59624 -12.52081 -12.43990 -12.35001 -12.24453 -11.91332 -11.85481 -11.68003 -11.48495 -11.43801 -10.96098 -10.59866 -10.21934 -9.94885 -9.53009 -8.23543 -6.33447 -0.96432 -0.24738 0.24631 1.42779 1.42814 1.44222 1.54235 1.77835 2.17980 2.44325 2.58750 2.74182 3.07887 3.11519 3.49563 3.64577 3.72717 3.83416 3.91185 4.13525 4.15364 4.18998 4.37265 4.42799 4.49034 4.49449 4.65575 4.69772 4.81391 4.85964 4.94713 5.04381 5.05876 5.19836 5.24212 5.25714 5.31695 5.39553 5.48282 5.59045 5.69778 5.79272 5.95307 6.16623 6.56369 6.79578 7.17841 7.35724 8.88162 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021615 B = 0.001947 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.107756 B =14377.433257 C =14639.007762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.612 4.612 4 S 2.614 3.386 5 O -0.973 6.973 6 O -0.981 6.981 7 N -1.054 6.054 8 C 0.132 3.868 9 C -0.131 4.131 10 C -0.093 4.093 11 C -0.089 4.089 12 C -0.126 4.126 13 C 0.548 3.452 14 O -0.585 6.585 15 N -0.709 5.709 16 C 0.140 3.860 17 C 0.022 3.978 18 C -0.546 4.546 19 H 0.058 0.942 20 C 0.008 3.992 21 N -0.925 5.925 22 Si 0.963 3.037 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.267 1.267 26 C -0.079 4.079 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.434 0.566 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.148 0.852 38 H 0.411 0.589 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.010 0.990 42 H 0.011 0.989 43 H 0.266 0.734 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 -26.292 5.255 27.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.745 4.745 4 S 2.712 3.288 5 O -0.963 6.963 6 O -0.972 6.972 7 N -0.805 5.805 8 C 0.036 3.964 9 C -0.152 4.152 10 C -0.111 4.111 11 C -0.108 4.108 12 C -0.130 4.130 13 C 0.337 3.663 14 O -0.467 6.467 15 N -0.360 5.360 16 C 0.016 3.984 17 C -0.015 4.015 18 C -0.585 4.585 19 H 0.077 0.923 20 C -0.191 4.191 21 N -0.564 5.564 22 Si 0.788 3.212 23 H -0.199 1.199 24 H -0.206 1.206 25 H -0.191 1.191 26 C -0.102 4.102 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.171 0.829 33 H 0.167 0.833 34 H 0.272 0.728 35 H 0.182 0.818 36 H 0.186 0.814 37 H 0.165 0.835 38 H 0.248 0.752 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.029 0.971 42 H 0.030 0.970 43 H 0.075 0.925 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.713 -26.823 5.746 28.020 hybrid contribution -0.641 1.674 0.176 1.801 sum 5.072 -25.149 5.923 26.331 Atomic orbital electron populations 1.21758 0.92992 1.03140 1.02851 1.21429 0.99545 0.91249 1.04346 1.30495 1.22725 1.07291 1.13985 1.04966 0.78792 0.71624 0.73370 1.93528 1.78521 1.81039 1.43172 1.93584 1.79588 1.74813 1.49169 1.53199 1.67920 1.26702 1.32659 1.17200 0.99733 0.91186 0.88259 1.22297 0.99182 1.02686 0.91060 1.21353 0.96533 0.91929 1.01293 1.21682 0.96921 0.97936 0.94309 1.19728 1.04199 0.93857 0.95244 1.18766 0.77746 0.84723 0.85109 1.90722 1.57430 1.78832 1.19675 1.46065 1.62000 1.17665 1.10276 1.21283 0.96402 0.82263 0.98433 1.19143 0.96116 0.94074 0.92209 1.21460 1.41523 1.02159 0.93330 0.92331 1.25844 0.96092 1.02326 0.94861 1.70047 1.48485 1.37615 1.00300 0.85470 0.78399 0.79180 0.78153 1.19871 1.20560 1.19121 1.21229 0.95959 0.92715 1.00252 0.91979 0.91927 0.90931 0.89623 0.89755 0.82924 0.83287 0.72755 0.81810 0.81407 0.83471 0.75169 0.93217 0.93330 0.97141 0.97021 0.92546 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.52 16 2 C -0.13 -1.18 5.94 30.59 0.18 -1.00 16 3 C -0.61 -5.87 5.93 71.98 0.43 -5.44 16 4 S 2.61 38.65 5.35 -56.49 -0.30 38.34 16 5 O -0.97 -18.84 15.17 -127.65 -1.94 -20.77 16 6 O -0.98 -20.40 18.08 -127.65 -2.31 -22.71 16 7 N -1.05 -14.95 5.67 -51.45 -0.29 -15.25 16 8 C 0.13 2.28 6.01 38.17 0.23 2.51 16 9 C -0.13 -2.12 9.23 22.45 0.21 -1.92 16 10 C -0.09 -1.34 10.02 22.21 0.22 -1.12 16 11 C -0.09 -1.62 9.54 22.54 0.21 -1.41 16 12 C -0.13 -3.06 5.87 -20.11 -0.12 -3.18 16 13 C 0.55 18.00 7.77 86.79 0.67 18.67 16 14 O -0.58 -23.52 16.35 -3.87 -0.06 -23.59 16 15 N -0.71 -23.61 5.51 -465.95 -2.57 -26.18 16 16 C 0.14 5.81 5.61 86.38 0.48 6.29 16 17 C 0.02 1.07 5.09 29.85 0.15 1.23 16 18 C -0.55 -29.84 9.11 25.60 0.23 -29.61 16 19 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 20 C 0.01 0.42 5.46 84.66 0.46 0.88 16 21 N -0.92 -53.07 13.29 21.45 0.28 -52.79 16 22 Si 0.96 42.88 29.54 68.60 2.03 44.90 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 C -0.08 -1.69 9.52 22.67 0.22 -1.47 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.15 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.43 4.94 8.92 -96.75 -0.86 4.08 16 35 H 0.16 2.62 5.62 -2.91 -0.02 2.60 16 36 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.15 2.25 6.40 -2.91 -0.02 2.23 16 38 H 0.41 11.36 6.50 -92.71 -0.60 10.76 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 42 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.14 3.02 7.65 -2.91 -0.02 3.00 16 Total: -1.00 -75.22 384.04 -1.29 -76.51 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -0.43 Total: 17.60 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 4.30 Total: -16.08 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -2.57 Total: -94.21 kcal Atomic # 8 Polarization: -62.76 SS G_CDS: -4.31 Total: -67.06 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 38.65 SS G_CDS: -0.30 Total: 38.34 kcal Total: -75.22 -1.29 -76.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345150945.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.234 kcal (2) G-P(sol) polarization free energy of solvation -75.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.14 seconds