Wall clock time and date at job start Sat Apr 11 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47209 * 2 1 4 4 S 1.81398 * 109.47262 * 180.02562 * 3 2 1 5 5 O 1.42100 * 110.54463 * 63.61617 * 4 3 2 6 6 O 1.42101 * 110.54179 * 286.86459 * 4 3 2 7 7 N 1.65599 * 104.44994 * 175.24202 * 4 3 2 8 8 C 1.39704 * 120.00133 * 299.45392 * 7 4 3 9 9 C 1.39024 * 120.00297 * 314.76959 * 8 7 4 10 10 C 1.38213 * 120.21775 * 179.97438 * 9 8 7 11 11 C 1.38028 * 120.22741 * 0.02562 * 10 9 8 12 12 C 1.39573 * 120.00521 * 359.97390 * 11 10 9 13 13 C 1.47858 * 120.10842 * 180.02562 * 12 11 10 14 14 O 1.21550 * 120.00435 * 319.29877 * 13 12 11 15 15 N 1.34786 * 119.99990 * 139.30147 * 13 12 11 16 16 C 1.46494 * 119.99885 * 4.79187 * 15 13 12 17 17 C 1.46501 * 120.00120 * 184.79477 * 15 13 12 18 18 C 1.50700 * 109.47184 * 89.99708 * 17 15 13 19 19 H 1.08003 * 120.00007 * 359.97438 * 18 17 15 20 20 C 1.37876 * 120.00099 * 180.02562 * 18 17 15 21 21 N 1.31513 * 120.00111 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99870 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47174 * 90.00107 * 22 20 18 24 24 H 1.48502 * 109.47151 * 210.00153 * 22 20 18 25 25 H 1.48502 * 109.46908 * 330.00571 * 22 20 18 26 26 C 1.38639 * 120.00549 * 134.74207 * 8 7 4 27 27 H 1.09001 * 109.47210 * 60.00244 * 1 2 3 28 28 H 1.08996 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47455 * 300.00272 * 1 2 3 30 30 H 1.08999 * 109.47455 * 239.99728 * 2 1 3 31 31 H 1.09001 * 109.47210 * 119.99756 * 2 1 3 32 32 H 1.08995 * 109.47470 * 59.99900 * 3 2 1 33 33 H 1.09001 * 109.46835 * 299.99986 * 3 2 1 34 34 H 0.97001 * 119.99745 * 119.46280 * 7 4 3 35 35 H 1.07991 * 119.89214 * 0.02562 * 9 8 7 36 36 H 1.07993 * 119.88452 * 179.97438 * 10 9 8 37 37 H 1.08000 * 119.99690 * 180.02562 * 11 10 9 38 38 H 1.08993 * 109.47286 * 86.47973 * 16 15 13 39 39 H 1.09002 * 109.47224 * 206.47787 * 16 15 13 40 40 H 1.09002 * 109.47402 * 326.47329 * 16 15 13 41 41 H 1.08992 * 109.46896 * 209.99804 * 17 15 13 42 42 H 1.09005 * 109.46563 * 330.00070 * 17 15 13 43 43 H 0.96998 * 119.99997 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.11123 * 0.27535 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 -0.0008 5 8 4.3522 0.8514 -1.1931 6 8 4.3531 1.0563 1.2724 7 7 4.2671 3.0406 -0.1337 8 6 3.8649 3.7755 -1.2517 9 6 4.0000 3.2339 -2.5250 10 6 3.6030 3.9568 -3.6341 11 6 3.0702 5.2213 -3.4851 12 6 2.9302 5.7741 -2.2112 13 6 2.3593 7.1283 -2.0489 14 8 2.6671 8.0144 -2.8219 15 7 1.4973 7.3803 -1.0438 16 6 1.2070 6.3433 -0.0506 17 6 0.8508 8.6911 -0.9445 18 6 -0.4449 8.6718 -1.7139 19 1 -0.7554 7.7731 -2.2261 20 6 -1.2333 9.8018 -1.7650 21 7 -2.3637 9.7850 -2.4369 22 14 -0.6958 11.3564 -0.8798 23 1 0.1243 12.1893 -1.7958 24 1 -1.8942 12.1228 -0.4535 25 1 0.1099 10.9931 0.3136 26 6 3.3303 5.0446 -1.0916 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 4.7886 3.4664 0.5646 35 1 4.4158 2.2448 -2.6478 36 1 3.7108 3.5310 -4.6207 37 1 2.7608 5.7827 -4.3543 38 1 1.9496 6.3851 0.7461 39 1 0.2146 6.5094 0.3687 40 1 1.2405 5.3637 -0.5276 41 1 0.6484 8.9181 0.1022 42 1 1.5093 9.4535 -1.3609 43 1 -2.9185 10.5799 -2.4725 44 1 3.2282 5.4688 -0.1036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356457500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:58 Heat of formation + Delta-G solvation = -71.765426 kcal Electronic energy + Delta-G solvation = -27657.791039 eV Core-core repulsion = 23702.803480 eV Total energy + Delta-G solvation = -3954.987559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.24005 -38.51360 -37.46104 -36.39281 -35.32224 -35.28567 -35.00592 -32.73098 -31.32494 -29.26174 -28.40417 -28.12730 -26.29872 -24.01021 -22.70461 -22.49161 -21.91240 -20.01609 -19.16334 -18.13693 -17.57431 -17.02104 -16.82260 -16.47278 -16.31913 -16.05741 -15.46395 -15.22050 -15.06095 -14.42352 -14.10941 -13.99024 -13.84338 -13.24646 -13.19019 -13.10206 -12.95656 -12.69361 -12.65320 -12.51436 -12.41515 -12.36410 -12.14574 -11.87089 -11.63356 -11.48340 -11.37928 -11.37127 -11.08802 -10.99814 -10.71547 -10.58453 -10.23035 -9.63899 -9.30447 -8.97624 -8.65249 -8.58439 -7.83681 -6.15159 -4.14952 -0.23842 0.93678 1.16726 2.18577 3.11307 3.24753 3.27779 3.30668 3.32895 3.56237 3.78040 3.87348 4.05505 4.31669 4.33910 4.59359 4.66953 4.72063 4.81842 4.90436 5.11521 5.16392 5.17082 5.18627 5.20907 5.35773 5.48047 5.51222 5.54742 5.62893 5.75199 5.78719 5.79125 6.03314 6.10006 6.28552 6.35670 6.48762 6.61556 6.82012 6.87098 7.19680 7.52621 8.07519 8.38591 8.77017 8.88159 9.44459 10.97996 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.002957 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.174940 B = 9465.675978 C =10147.535077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.625 4.625 4 S 2.605 3.395 5 O -0.948 6.948 6 O -0.954 6.954 7 N -1.056 6.056 8 C 0.125 3.875 9 C -0.141 4.141 10 C -0.102 4.102 11 C -0.073 4.073 12 C -0.096 4.096 13 C 0.549 3.451 14 O -0.531 6.531 15 N -0.589 5.589 16 C 0.076 3.924 17 C 0.214 3.786 18 C -0.533 4.533 19 H 0.075 0.925 20 C 0.074 3.926 21 N -0.896 5.896 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.266 1.266 26 C -0.109 4.109 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.426 0.574 35 H 0.158 0.842 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.032 0.968 42 H 0.040 0.960 43 H 0.265 0.735 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.080 -19.705 6.379 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.755 4.755 4 S 2.701 3.299 5 O -0.938 6.938 6 O -0.944 6.944 7 N -0.807 5.807 8 C 0.030 3.970 9 C -0.162 4.162 10 C -0.121 4.121 11 C -0.093 4.093 12 C -0.100 4.100 13 C 0.335 3.665 14 O -0.409 6.409 15 N -0.320 5.320 16 C -0.068 4.068 17 C 0.094 3.906 18 C -0.572 4.572 19 H 0.093 0.907 20 C -0.129 4.129 21 N -0.534 5.534 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.191 1.191 26 C -0.131 4.131 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.263 0.737 35 H 0.176 0.824 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.605 -19.931 5.938 23.345 hybrid contribution -0.371 1.544 0.770 1.765 sum 10.234 -18.387 6.708 22.086 Atomic orbital electron populations 1.21724 0.93466 1.02424 1.02877 1.21264 0.99093 0.91490 1.03569 1.30579 1.25795 1.06508 1.12630 1.05317 0.77904 0.72337 0.74361 1.93563 1.77188 1.75013 1.48034 1.93621 1.78264 1.80260 1.42294 1.53274 1.66933 1.31384 1.29107 1.17226 1.00399 0.93465 0.85943 1.22023 1.00658 1.02841 0.90725 1.21038 0.98244 0.94003 0.98823 1.21367 0.96298 0.94878 0.96712 1.20064 1.00936 0.95133 0.93851 1.18165 0.79709 0.87134 0.81463 1.90768 1.60572 1.46175 1.43370 1.47752 1.42546 1.15682 1.25975 1.21986 1.01724 0.91500 0.91566 1.19738 0.93635 0.79927 0.97284 1.21311 1.03028 1.00246 1.32567 0.90686 1.24851 0.94653 0.98479 0.94921 1.69890 1.12609 1.29575 1.41299 0.86849 0.78439 0.83789 0.80606 1.19809 1.21002 1.19052 1.21622 0.98061 0.93922 0.99459 0.91873 0.91875 0.92052 0.90085 0.90503 0.84393 0.84359 0.73717 0.82440 0.84680 0.84571 0.93436 0.90331 0.91567 0.94975 0.94225 0.92465 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.72 5.94 -26.73 -0.16 -0.88 16 3 C -0.62 -3.95 5.92 37.16 0.22 -3.73 16 4 S 2.61 22.01 5.34 -107.50 -0.57 21.44 16 5 O -0.95 -10.38 15.18 -57.54 -0.87 -11.25 16 6 O -0.95 -10.60 18.08 -57.54 -1.04 -11.64 16 7 N -1.06 -8.52 5.67 32.39 0.18 -8.33 16 8 C 0.12 1.28 5.93 -83.83 -0.50 0.78 16 9 C -0.14 -1.50 9.25 -39.30 -0.36 -1.87 16 10 C -0.10 -1.12 10.02 -39.67 -0.40 -1.51 16 11 C -0.07 -1.00 9.64 -39.16 -0.38 -1.38 16 12 C -0.10 -1.45 5.19 -104.99 -0.54 -2.00 16 13 C 0.55 11.01 7.33 -12.32 -0.09 10.92 16 14 O -0.53 -12.88 16.49 5.32 0.09 -12.79 16 15 N -0.59 -11.66 2.86 -184.08 -0.53 -12.19 16 16 C 0.08 1.08 8.90 59.84 0.53 1.62 16 17 C 0.21 5.08 4.25 -5.19 -0.02 5.06 16 18 C -0.53 -14.91 9.94 -34.44 -0.34 -15.25 16 19 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 20 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 21 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 22 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 26 C -0.11 -1.27 7.48 -38.97 -0.29 -1.56 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.14 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.14 0.82 8.05 -51.92 -0.42 0.41 16 34 H 0.43 2.66 8.92 -34.47 -0.31 2.36 16 35 H 0.16 1.63 5.58 -52.49 -0.29 1.34 16 36 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.05 0.53 6.97 -51.93 -0.36 0.17 16 39 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 40 H 0.07 0.81 5.81 -51.93 -0.30 0.51 16 41 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 42 H 0.04 1.01 6.79 -51.93 -0.35 0.65 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.14 1.42 5.50 -52.49 -0.29 1.13 16 LS Contribution 375.08 15.07 5.65 5.65 Total: -1.00 -37.37 375.08 -9.13 -46.50 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.08 Total: 0.80 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.06 Total: -8.32 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.43 Total: -46.79 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.83 Total: -35.68 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 16 Polarization: 22.01 SS G_CDS: -0.57 Total: 21.44 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.37 -9.13 -46.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356457500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.262 kcal (2) G-P(sol) polarization free energy of solvation -37.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds