Wall clock time and date at job start Sat Apr 11 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47209 * 2 1 4 4 S 1.81398 * 109.47262 * 180.02562 * 3 2 1 5 5 O 1.42100 * 110.54463 * 63.61617 * 4 3 2 6 6 O 1.42101 * 110.54179 * 286.86459 * 4 3 2 7 7 N 1.65599 * 104.44994 * 175.24202 * 4 3 2 8 8 C 1.39704 * 120.00133 * 299.45392 * 7 4 3 9 9 C 1.39024 * 120.00297 * 314.76959 * 8 7 4 10 10 C 1.38213 * 120.21775 * 179.97438 * 9 8 7 11 11 C 1.38028 * 120.22741 * 0.02562 * 10 9 8 12 12 C 1.39573 * 120.00521 * 359.97390 * 11 10 9 13 13 C 1.47858 * 120.10842 * 180.02562 * 12 11 10 14 14 O 1.21550 * 120.00435 * 319.29877 * 13 12 11 15 15 N 1.34786 * 119.99990 * 139.30147 * 13 12 11 16 16 C 1.46494 * 119.99885 * 4.79187 * 15 13 12 17 17 C 1.46501 * 120.00120 * 184.79477 * 15 13 12 18 18 C 1.50700 * 109.47184 * 89.99708 * 17 15 13 19 19 H 1.08003 * 120.00007 * 359.97438 * 18 17 15 20 20 C 1.37876 * 120.00099 * 180.02562 * 18 17 15 21 21 N 1.31513 * 120.00111 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99870 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47174 * 90.00107 * 22 20 18 24 24 H 1.48502 * 109.47151 * 210.00153 * 22 20 18 25 25 H 1.48502 * 109.46908 * 330.00571 * 22 20 18 26 26 C 1.38639 * 120.00549 * 134.74207 * 8 7 4 27 27 H 1.09001 * 109.47210 * 60.00244 * 1 2 3 28 28 H 1.08996 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47455 * 300.00272 * 1 2 3 30 30 H 1.08999 * 109.47455 * 239.99728 * 2 1 3 31 31 H 1.09001 * 109.47210 * 119.99756 * 2 1 3 32 32 H 1.08995 * 109.47470 * 59.99900 * 3 2 1 33 33 H 1.09001 * 109.46835 * 299.99986 * 3 2 1 34 34 H 0.97001 * 119.99745 * 119.46280 * 7 4 3 35 35 H 1.07991 * 119.89214 * 0.02562 * 9 8 7 36 36 H 1.07993 * 119.88452 * 179.97438 * 10 9 8 37 37 H 1.08000 * 119.99690 * 180.02562 * 11 10 9 38 38 H 1.08993 * 109.47286 * 86.47973 * 16 15 13 39 39 H 1.09002 * 109.47224 * 206.47787 * 16 15 13 40 40 H 1.09002 * 109.47402 * 326.47329 * 16 15 13 41 41 H 1.08992 * 109.46896 * 209.99804 * 17 15 13 42 42 H 1.09005 * 109.46563 * 330.00070 * 17 15 13 43 43 H 0.96998 * 119.99997 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.11123 * 0.27535 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 -0.0008 5 8 4.3522 0.8514 -1.1931 6 8 4.3531 1.0563 1.2724 7 7 4.2671 3.0406 -0.1337 8 6 3.8649 3.7755 -1.2517 9 6 4.0000 3.2339 -2.5250 10 6 3.6030 3.9568 -3.6341 11 6 3.0702 5.2213 -3.4851 12 6 2.9302 5.7741 -2.2112 13 6 2.3593 7.1283 -2.0489 14 8 2.6671 8.0144 -2.8219 15 7 1.4973 7.3803 -1.0438 16 6 1.2070 6.3433 -0.0506 17 6 0.8508 8.6911 -0.9445 18 6 -0.4449 8.6718 -1.7139 19 1 -0.7554 7.7731 -2.2261 20 6 -1.2333 9.8018 -1.7650 21 7 -2.3637 9.7850 -2.4369 22 14 -0.6958 11.3564 -0.8798 23 1 0.1243 12.1893 -1.7958 24 1 -1.8942 12.1228 -0.4535 25 1 0.1099 10.9931 0.3136 26 6 3.3303 5.0446 -1.0916 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 4.7886 3.4664 0.5646 35 1 4.4158 2.2448 -2.6478 36 1 3.7108 3.5310 -4.6207 37 1 2.7608 5.7827 -4.3543 38 1 1.9496 6.3851 0.7461 39 1 0.2146 6.5094 0.3687 40 1 1.2405 5.3637 -0.5276 41 1 0.6484 8.9181 0.1022 42 1 1.5093 9.4535 -1.3609 43 1 -2.9185 10.5799 -2.4725 44 1 3.2282 5.4688 -0.1036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356457500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:57 Heat of formation + Delta-G solvation = -99.752353 kcal Electronic energy + Delta-G solvation = -27659.004643 eV Core-core repulsion = 23702.803480 eV Total energy + Delta-G solvation = -3956.201163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.43895 -39.76695 -38.24331 -37.15328 -36.78918 -36.01894 -35.77393 -34.76220 -32.56142 -30.17477 -30.15046 -28.61747 -27.64025 -25.52010 -23.78529 -23.36367 -22.86568 -21.05634 -20.16090 -19.15355 -18.87248 -18.68395 -17.61229 -17.50164 -17.31948 -17.11014 -16.68695 -16.45026 -15.98569 -15.70819 -15.57954 -14.86149 -14.79785 -14.46998 -14.34597 -14.14612 -13.92969 -13.68548 -13.62506 -13.59707 -13.43783 -13.30177 -13.23777 -13.12032 -12.87826 -12.48113 -12.42395 -12.34225 -12.30044 -12.05199 -11.87297 -11.80263 -11.75379 -11.41898 -10.85574 -10.82764 -9.99074 -9.55079 -9.39749 -8.34574 -6.40367 -0.90620 -0.10339 0.25999 1.33606 1.37962 1.45848 1.49837 1.74793 2.22713 2.30965 2.61629 2.71548 2.99990 3.14492 3.51935 3.54271 3.77923 3.84326 3.96216 4.14875 4.21263 4.22810 4.34414 4.40752 4.45773 4.58786 4.70938 4.72271 4.74366 4.84517 4.91156 4.94077 4.95865 5.08866 5.10824 5.19472 5.31153 5.36407 5.42638 5.44727 5.55492 5.73083 6.01547 6.21623 6.57609 6.61432 7.16787 7.30350 8.82143 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.002957 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.174940 B = 9465.675978 C =10147.535077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.613 4.613 4 S 2.616 3.384 5 O -0.975 6.975 6 O -0.980 6.980 7 N -1.049 6.049 8 C 0.141 3.859 9 C -0.137 4.137 10 C -0.091 4.091 11 C -0.090 4.090 12 C -0.116 4.116 13 C 0.541 3.459 14 O -0.590 6.590 15 N -0.596 5.596 16 C 0.066 3.934 17 C 0.222 3.778 18 C -0.539 4.539 19 H 0.030 0.970 20 C 0.013 3.987 21 N -0.944 5.944 22 Si 0.947 3.053 23 H -0.277 1.277 24 H -0.275 1.275 25 H -0.235 1.235 26 C -0.099 4.099 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.436 0.564 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.021 0.979 43 H 0.269 0.731 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.154 -20.987 8.690 25.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.746 4.746 4 S 2.714 3.286 5 O -0.965 6.965 6 O -0.970 6.970 7 N -0.800 5.800 8 C 0.045 3.955 9 C -0.158 4.158 10 C -0.109 4.109 11 C -0.110 4.110 12 C -0.120 4.120 13 C 0.330 3.670 14 O -0.471 6.471 15 N -0.326 5.326 16 C -0.075 4.075 17 C 0.099 3.901 18 C -0.578 4.578 19 H 0.048 0.952 20 C -0.185 4.185 21 N -0.584 5.584 22 Si 0.769 3.231 23 H -0.203 1.203 24 H -0.200 1.200 25 H -0.158 1.158 26 C -0.121 4.121 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.178 0.822 33 H 0.165 0.835 34 H 0.275 0.725 35 H 0.184 0.816 36 H 0.180 0.820 37 H 0.137 0.863 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.721 -21.266 8.302 25.662 hybrid contribution -0.741 1.764 0.002 1.913 sum 10.980 -19.502 8.304 23.871 Atomic orbital electron populations 1.21758 0.93200 1.02996 1.02844 1.21410 0.99346 0.91484 1.04270 1.30503 1.22705 1.07186 1.14194 1.04919 0.78725 0.71815 0.73147 1.93524 1.78568 1.75571 1.48840 1.93590 1.79555 1.80625 1.43270 1.53148 1.67106 1.30983 1.28777 1.17127 0.99135 0.92816 0.86444 1.22233 0.99737 1.03001 0.90780 1.21232 0.96742 0.92533 1.00391 1.21356 0.97648 0.96153 0.95828 1.19715 1.03372 0.93249 0.95651 1.18954 0.79148 0.88540 0.80362 1.90717 1.62734 1.48367 1.45310 1.47836 1.41938 1.15570 1.27221 1.22363 1.02780 0.90893 0.91491 1.19425 0.91199 0.82011 0.97422 1.21546 1.04919 0.98773 1.32558 0.95166 1.25831 0.94509 1.02356 0.95823 1.70042 1.14176 1.30893 1.43255 0.85735 0.78490 0.78701 0.80150 1.20318 1.20025 1.15847 1.21648 0.97319 0.93970 0.99119 0.92277 0.91143 0.91712 0.89789 0.89701 0.82236 0.83542 0.72470 0.81570 0.82042 0.86319 0.89260 0.90882 0.89403 0.92538 0.96100 0.92215 0.82150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.13 -1.25 5.94 30.59 0.18 -1.06 16 3 C -0.61 -5.77 5.92 71.98 0.43 -5.34 16 4 S 2.62 37.24 5.34 -56.49 -0.30 36.94 16 5 O -0.98 -19.14 15.18 -127.65 -1.94 -21.07 16 6 O -0.98 -19.54 18.08 -127.65 -2.31 -21.84 16 7 N -1.05 -13.49 5.67 -51.45 -0.29 -13.79 16 8 C 0.14 2.44 5.93 38.17 0.23 2.67 16 9 C -0.14 -2.53 9.25 22.45 0.21 -2.32 16 10 C -0.09 -1.81 10.02 22.21 0.22 -1.58 16 11 C -0.09 -2.47 9.64 22.54 0.22 -2.25 16 12 C -0.12 -3.45 5.19 -20.11 -0.10 -3.56 16 13 C 0.54 22.09 7.33 86.79 0.64 22.73 16 14 O -0.59 -29.96 16.49 -3.87 -0.06 -30.02 16 15 N -0.60 -23.41 2.86 -854.57 -2.44 -25.85 16 16 C 0.07 1.73 8.90 127.77 1.14 2.87 16 17 C 0.22 10.49 4.25 85.63 0.36 10.85 16 18 C -0.54 -31.10 9.94 25.60 0.25 -30.85 16 19 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 20 C 0.01 0.76 5.47 84.65 0.46 1.22 16 21 N -0.94 -58.74 13.96 21.45 0.30 -58.44 16 22 Si 0.95 43.44 27.47 68.60 1.88 45.32 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 25 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 26 C -0.10 -2.05 7.48 22.67 0.17 -1.88 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.15 1.23 8.05 -2.39 -0.02 1.21 16 34 H 0.44 3.97 8.92 -96.75 -0.86 3.11 16 35 H 0.17 2.94 5.58 -2.92 -0.02 2.92 16 36 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 37 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.09 1.61 6.97 -2.39 -0.02 1.59 16 39 H 0.07 2.00 8.05 -2.39 -0.02 1.98 16 40 H 0.09 1.90 5.81 -2.39 -0.01 1.89 16 41 H 0.06 2.40 7.13 -2.39 -0.02 2.38 16 42 H 0.02 1.07 6.79 -2.38 -0.02 1.05 16 43 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.16 2.61 5.50 -2.91 -0.02 2.59 16 Total: -1.00 -85.30 375.08 0.07 -85.24 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.11 Total: 12.74 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 5.12 Total: -9.22 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -2.43 Total: -98.08 kcal Atomic # 8 Polarization: -68.63 SS G_CDS: -4.31 Total: -72.94 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.32 kcal Atomic # 16 Polarization: 37.24 SS G_CDS: -0.30 Total: 36.94 kcal Total: -85.30 0.07 -85.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356457500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.514 kcal (2) G-P(sol) polarization free energy of solvation -85.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds