Wall clock time and date at job start Sat Apr 11 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47096 * 2 1 4 4 N 1.46497 * 109.47104 * 179.97438 * 3 2 1 5 5 S 1.65597 * 120.00020 * 164.72408 * 4 3 2 6 6 O 1.42101 * 106.40279 * 178.54034 * 5 4 3 7 7 O 1.42100 * 106.40418 * 311.46808 * 5 4 3 8 8 C 1.76201 * 107.21723 * 65.00617 * 5 4 3 9 9 C 1.38287 * 119.92786 * 269.72492 * 8 5 4 10 10 C 1.38115 * 120.06714 * 179.76234 * 9 8 5 11 11 C 1.38870 * 119.93241 * 0.51157 * 10 9 8 12 12 N 1.39918 * 120.07228 * 179.72313 * 11 10 9 13 13 C 1.34781 * 120.00146 * 213.31124 * 12 11 10 14 14 O 1.21289 * 119.99498 * 5.27092 * 13 12 11 15 15 C 1.50693 * 120.00336 * 185.27424 * 13 12 11 16 16 C 1.53005 * 109.47539 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.47172 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00094 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99743 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99601 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00000 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47062 * 89.99725 * 21 19 17 23 23 H 1.48500 * 109.47148 * 209.99873 * 21 19 17 24 24 H 1.48505 * 109.47188 * 329.99775 * 21 19 17 25 25 C 1.38875 * 119.85697 * 359.73938 * 11 10 9 26 26 C 1.38111 * 119.93285 * 0.02562 * 25 11 10 27 27 H 1.09005 * 109.46893 * 59.99792 * 1 2 3 28 28 H 1.08999 * 109.47057 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47085 * 299.99825 * 1 2 3 30 30 H 1.09003 * 109.46880 * 240.00297 * 2 1 3 31 31 H 1.08998 * 109.46976 * 120.00616 * 2 1 3 32 32 H 1.09003 * 109.47014 * 60.00379 * 3 2 1 33 33 H 1.08991 * 109.47367 * 300.00041 * 3 2 1 34 34 H 0.97007 * 120.00157 * 345.00551 * 4 3 2 35 35 H 1.07996 * 119.96386 * 0.02562 * 9 8 5 36 36 H 1.08001 * 120.03146 * 180.25507 * 10 9 8 37 37 H 0.96999 * 120.00173 * 33.30780 * 12 11 10 38 38 H 1.09007 * 109.47059 * 299.99658 * 15 13 12 39 39 H 1.09008 * 109.47481 * 59.99602 * 15 13 12 40 40 H 1.09007 * 109.46624 * 299.99873 * 16 15 13 41 41 H 1.09002 * 109.46753 * 59.99539 * 16 15 13 42 42 H 0.97009 * 119.99645 * 180.02562 * 20 19 17 43 43 H 1.07996 * 120.03562 * 179.97438 * 25 11 10 44 44 H 1.07994 * 119.97282 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 16 4.3332 2.8259 -0.3771 6 8 5.7139 2.5130 -0.2550 7 8 3.7526 3.3272 -1.5732 8 6 3.9776 4.0067 0.8815 9 6 2.9013 4.8633 0.7396 10 6 2.6170 5.7867 1.7265 11 6 3.4195 5.8615 2.8574 12 7 3.1376 6.7997 3.8563 13 6 4.1431 7.3608 4.5570 14 8 5.2950 7.1257 4.2587 15 6 3.8360 8.2801 5.7109 16 6 5.1444 8.7771 6.3293 17 6 4.8373 9.6958 7.4836 18 1 3.8115 9.9048 7.7494 19 6 5.8658 10.2697 8.2004 20 7 5.5978 11.0719 9.2075 21 14 7.6399 9.9089 7.7402 22 1 8.1066 10.9086 6.7462 23 1 8.4913 9.9836 8.9546 24 1 7.7322 8.5476 7.1540 25 6 4.5028 5.0033 2.9944 26 6 4.7789 4.0789 2.0062 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8899 34 1 3.9900 0.6310 0.2183 35 1 2.2799 4.8073 -0.1419 36 1 1.7738 6.4526 1.6170 37 1 2.2186 7.0464 4.0446 38 1 3.2573 9.1317 5.3530 39 1 3.2606 7.7399 6.4628 40 1 5.7235 7.9257 6.6871 41 1 5.7194 9.3174 5.5772 42 1 6.3215 11.4760 9.7116 43 1 5.1291 5.0593 3.8724 44 1 5.6214 3.4115 2.1119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360395906.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:37 Heat of formation + Delta-G solvation = -127.981828 kcal Electronic energy + Delta-G solvation = -26398.395182 eV Core-core repulsion = 22440.969897 eV Total energy + Delta-G solvation = -3957.425285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.72438 -39.69098 -38.40925 -37.25195 -36.99236 -36.07951 -35.59290 -33.44635 -33.01774 -32.15736 -31.12035 -28.10902 -26.53717 -24.76225 -24.11884 -22.86179 -22.54042 -21.31553 -20.55255 -19.37716 -19.14330 -18.66502 -18.21233 -17.86109 -17.33187 -16.84452 -16.32614 -16.18553 -16.12128 -15.70433 -15.52868 -15.23809 -14.75491 -14.68768 -14.44414 -14.31727 -14.07982 -14.00406 -13.69970 -13.63215 -13.46571 -13.25758 -13.18463 -12.95589 -12.57117 -12.44476 -12.17149 -12.13401 -12.01556 -11.90273 -11.80060 -11.74741 -11.67688 -11.43037 -10.94973 -10.80201 -10.46206 -10.12984 -9.56806 -8.33578 -6.36405 -0.67764 -0.32978 0.23188 1.31198 1.34131 1.41187 1.47344 1.85851 2.04350 2.32285 2.44422 2.75910 3.02419 3.26947 3.62936 3.80175 3.86265 3.95675 4.16934 4.19474 4.23759 4.30167 4.39409 4.43131 4.43923 4.57451 4.75101 4.75896 4.84497 4.86454 4.93817 5.01380 5.08583 5.14043 5.24540 5.24792 5.33173 5.33935 5.39672 5.51017 5.58264 5.78873 6.07868 6.19438 6.30220 6.70317 7.01889 7.29050 8.81774 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.002088 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.172654 B =13409.363414 C =14021.593165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.129 4.129 3 C 0.104 3.896 4 N -1.107 6.107 5 S 2.721 3.279 6 O -0.993 6.993 7 O -0.981 6.981 8 C -0.702 4.702 9 C -0.001 4.001 10 C -0.161 4.161 11 C 0.198 3.802 12 N -0.664 5.664 13 C 0.517 3.483 14 O -0.556 6.556 15 C -0.113 4.113 16 C 0.002 3.998 17 C -0.528 4.528 18 H 0.054 0.946 19 C 0.014 3.986 20 N -0.942 5.942 21 Si 0.936 3.064 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.261 1.261 25 C -0.170 4.170 26 C -0.007 4.007 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.427 0.573 35 H 0.169 0.831 36 H 0.171 0.829 37 H 0.435 0.565 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.011 0.989 41 H 0.009 0.991 42 H 0.267 0.733 43 H 0.122 0.878 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.451 -23.642 -21.077 34.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.168 4.168 3 C -0.021 4.021 4 N -0.870 5.870 5 S 2.811 3.189 6 O -0.983 6.983 7 O -0.971 6.971 8 C -0.791 4.791 9 C -0.021 4.021 10 C -0.182 4.182 11 C 0.102 3.898 12 N -0.311 5.311 13 C 0.307 3.693 14 O -0.433 6.433 15 C -0.153 4.153 16 C -0.036 4.036 17 C -0.566 4.566 18 H 0.072 0.928 19 C -0.184 4.184 20 N -0.582 5.582 21 Si 0.760 3.240 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.185 1.185 25 C -0.191 4.191 26 C -0.027 4.027 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.264 0.736 35 H 0.187 0.813 36 H 0.189 0.811 37 H 0.275 0.725 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.030 0.970 41 H 0.028 0.972 42 H 0.076 0.924 43 H 0.140 0.860 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.132 -23.343 -21.827 34.551 hybrid contribution 0.713 0.401 1.298 1.534 sum -12.418 -22.942 -20.529 33.197 Atomic orbital electron populations 1.21742 0.94207 1.02654 1.02594 1.21708 0.97015 0.94680 1.03416 1.21649 0.77222 1.00177 1.03092 1.55265 1.16388 1.26993 1.88372 1.00839 0.71944 0.72827 0.73247 1.93555 1.33151 1.84256 1.87340 1.93546 1.79048 1.80613 1.43859 1.30781 1.08650 1.21666 1.17967 1.21072 0.92794 0.90386 0.97860 1.21346 1.02988 1.02259 0.91630 1.18352 0.94995 0.87570 0.88900 1.43722 1.11739 1.40718 1.34902 1.21589 0.84555 0.79937 0.83216 1.90698 1.22448 1.61871 1.68248 1.21544 1.00740 0.98711 0.94288 1.19260 0.94287 0.95439 0.94613 1.21404 0.94287 1.27102 1.13810 0.92779 1.25782 1.03333 0.94564 0.94712 1.70016 1.33974 1.32664 1.21549 0.85872 0.80398 0.79729 0.77951 1.19585 1.20507 1.18527 1.21311 0.99726 0.96641 1.01426 1.20842 0.96026 0.95349 0.90458 0.92101 0.91803 0.92027 0.90959 0.90611 0.90389 0.89921 0.73555 0.81327 0.81142 0.72489 0.86964 0.86935 0.97011 0.97246 0.92392 0.86022 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 71.98 0.71 -0.02 16 2 C -0.13 -0.73 6.08 30.60 0.19 -0.54 16 3 C 0.10 0.82 6.22 86.38 0.54 1.36 16 4 N -1.11 -11.89 6.00 -187.50 -1.12 -13.01 16 5 S 2.72 49.96 5.74 -56.49 -0.32 49.63 16 6 O -0.99 -25.03 17.27 -128.00 -2.21 -27.24 16 7 O -0.98 -22.11 16.74 -128.00 -2.14 -24.25 16 8 C -0.70 -13.65 5.95 22.29 0.13 -13.52 16 9 C 0.00 -0.02 9.51 22.25 0.21 0.19 16 10 C -0.16 -2.65 9.96 22.39 0.22 -2.43 16 11 C 0.20 4.56 6.28 38.15 0.24 4.80 16 12 N -0.66 -14.65 5.34 -303.51 -1.62 -16.27 16 13 C 0.52 16.50 7.57 87.65 0.66 17.16 16 14 O -0.56 -22.76 13.67 -3.06 -0.04 -22.80 16 15 C -0.11 -3.82 5.64 29.85 0.17 -3.65 16 16 C 0.00 0.10 3.33 29.85 0.10 0.20 16 17 C -0.53 -29.32 9.66 25.60 0.25 -29.07 16 18 H 0.05 3.14 7.99 -2.91 -0.02 3.12 16 19 C 0.01 0.82 5.47 84.66 0.46 1.28 16 20 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 21 Si 0.94 45.99 27.47 68.60 1.88 47.87 16 22 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 24 H -0.26 -12.70 6.54 99.48 0.65 -12.05 16 25 C -0.17 -4.58 8.66 22.39 0.19 -4.39 16 26 C -0.01 -0.16 9.51 22.25 0.21 0.05 16 27 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 28 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.65 7.75 -2.39 -0.02 0.63 16 34 H 0.43 3.13 8.65 -96.74 -0.84 2.29 16 35 H 0.17 1.80 7.60 -2.91 -0.02 1.78 16 36 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.43 5.79 8.82 -92.71 -0.82 4.98 16 38 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 39 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 40 H 0.01 0.57 7.16 -2.38 -0.02 0.56 16 41 H 0.01 0.45 7.53 -2.39 -0.02 0.43 16 42 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 43 H 0.12 3.85 6.41 -2.91 -0.02 3.83 16 44 H 0.15 3.10 7.61 -2.91 -0.02 3.07 16 Total: -1.00 -81.99 381.72 -1.67 -83.66 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -0.68 Total: 8.56 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 4.29 Total: -28.58 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -2.45 Total: -86.86 kcal Atomic # 8 Polarization: -69.89 SS G_CDS: -4.40 Total: -74.29 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.88 Total: 47.87 kcal Atomic # 16 Polarization: 49.96 SS G_CDS: -0.32 Total: 49.63 kcal Total: -81.99 -1.67 -83.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360395906.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.319 kcal (2) G-P(sol) polarization free energy of solvation -81.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds