Wall clock time and date at job start Sat Apr 11 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46948 * 2 1 4 4 C 1.50700 * 109.47192 * 239.99541 * 2 1 3 5 5 C 1.38241 * 119.99620 * 114.69690 * 4 2 1 6 6 C 1.38240 * 119.99714 * 179.79334 * 5 4 2 7 7 C 1.38237 * 119.99983 * 0.45867 * 6 5 4 8 8 S 1.76197 * 119.99955 * 179.79435 * 7 6 5 9 9 N 1.65596 * 107.21615 * 269.97905 * 8 7 6 10 10 O 1.42101 * 106.40082 * 23.51763 * 8 7 6 11 11 O 1.42096 * 106.40155 * 156.43694 * 8 7 6 12 12 C 1.38239 * 119.99807 * 359.77259 * 7 6 5 13 13 C 1.38230 * 120.00282 * 294.96946 * 4 2 1 14 14 N 1.46498 * 109.47170 * 119.99746 * 2 1 3 15 15 C 1.46507 * 120.00138 * 53.96085 * 14 2 1 16 16 C 1.34779 * 120.00142 * 233.96059 * 14 2 1 17 17 O 1.21279 * 119.99658 * 0.02562 * 16 14 2 18 18 C 1.50703 * 120.00123 * 179.97438 * 16 14 2 19 19 C 1.52995 * 109.47302 * 179.97438 * 18 16 14 20 20 C 1.50693 * 109.47199 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00253 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99762 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99643 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00374 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47264 * 90.00107 * 24 22 20 26 26 H 1.48500 * 109.47479 * 210.00314 * 24 22 20 27 27 H 1.48499 * 109.47040 * 330.00190 * 24 22 20 28 28 H 1.09001 * 109.46948 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46989 * 300.00103 * 1 2 3 30 30 H 1.08991 * 109.47316 * 60.00293 * 1 2 3 31 31 H 1.07996 * 120.00082 * 359.97438 * 5 4 2 32 32 H 1.08001 * 119.99766 * 180.25464 * 6 5 4 33 33 H 0.97001 * 120.00624 * 359.97438 * 9 8 7 34 34 H 0.97006 * 120.00011 * 179.97438 * 9 8 7 35 35 H 1.08003 * 119.99697 * 180.02562 * 12 7 6 36 36 H 1.08001 * 120.00126 * 359.97438 * 13 4 2 37 37 H 1.09003 * 109.46866 * 87.78814 * 15 14 2 38 38 H 1.08998 * 109.47105 * 207.79185 * 15 14 2 39 39 H 1.08999 * 109.46968 * 327.79461 * 15 14 2 40 40 H 1.08994 * 109.47445 * 300.00699 * 18 16 14 41 41 H 1.09002 * 109.46631 * 60.00042 * 18 16 14 42 42 H 1.08994 * 109.47536 * 300.00760 * 19 18 16 43 43 H 1.09001 * 109.46849 * 60.00018 * 19 18 16 44 44 H 0.97004 * 119.99858 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.7344 -0.0110 -2.1942 6 6 3.1989 -0.6636 -3.3208 7 6 2.9532 -2.0137 -3.4882 8 16 3.5406 -2.8443 -4.9268 9 7 2.3516 -2.7372 -6.0744 10 8 4.6364 -2.0806 -5.4117 11 8 3.6433 -4.2191 -4.5824 12 6 2.2471 -2.7121 -2.5266 13 6 1.7863 -2.0604 -1.3979 14 7 2.0183 -0.6905 1.1962 15 6 1.5588 -2.0488 1.4969 16 6 2.8904 -0.0764 2.0201 17 8 3.2705 1.0482 1.7714 18 6 3.3923 -0.7865 3.2509 19 6 4.3630 0.1243 4.0051 20 6 4.8654 -0.5860 5.2355 21 1 4.5266 -1.5872 5.4572 22 6 5.7576 0.0423 6.0782 23 7 6.1964 -0.5779 7.1518 24 14 6.3443 1.7737 5.6945 25 1 5.4325 2.7578 6.3312 26 1 7.7196 1.9590 6.2232 27 1 6.3472 1.9808 4.2240 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 2.9224 1.0447 -2.0656 32 1 3.7509 -0.1180 -4.0719 33 1 1.5232 -2.2747 -5.8729 34 1 2.4837 -3.1369 -6.9483 35 1 2.0555 -3.7669 -2.6572 36 1 1.2344 -2.6060 -0.6469 37 1 2.2052 -2.7701 0.9970 38 1 1.5941 -2.2142 2.5737 39 1 0.5350 -2.1725 1.1436 40 1 2.5498 -1.0342 3.8965 41 1 3.9067 -1.7018 2.9578 42 1 5.2055 0.3716 3.3593 43 1 3.8490 1.0398 4.2980 44 1 6.8238 -0.1357 7.7449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362428581.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:42 Heat of formation + Delta-G solvation = -116.103602 kcal Electronic energy + Delta-G solvation = -27137.238544 eV Core-core repulsion = 23180.328338 eV Total energy + Delta-G solvation = -3956.910207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.52132 -40.15196 -38.25897 -37.30053 -36.94112 -35.61171 -34.08463 -33.97657 -32.93419 -32.17005 -30.65319 -28.18384 -27.94781 -25.18757 -23.93309 -23.53812 -21.84925 -20.56909 -20.12756 -19.38953 -19.16619 -18.34576 -17.98919 -17.65838 -17.02003 -16.87514 -16.80165 -16.28718 -16.04971 -15.75394 -15.54584 -14.97417 -14.88760 -14.65244 -14.57195 -14.20873 -13.94691 -13.72676 -13.51151 -13.28798 -13.22323 -13.21359 -13.17353 -13.07226 -12.93524 -12.83308 -12.33991 -12.15413 -12.02404 -11.98819 -11.80747 -11.77857 -11.41499 -11.35020 -10.80203 -10.79487 -10.31757 -10.10837 -9.75230 -8.33241 -6.35987 -0.65926 -0.35293 0.23174 1.30844 1.33321 1.48003 1.59495 1.89139 2.17020 2.33062 2.40975 2.75222 3.02374 3.40049 3.44274 3.70863 3.82137 3.86371 4.10897 4.19965 4.24499 4.27785 4.33830 4.40917 4.45361 4.59922 4.66517 4.73148 4.79895 4.85196 4.94122 4.97691 5.02118 5.06907 5.22075 5.27986 5.30062 5.35381 5.41220 5.58298 5.59217 5.73923 6.20727 6.29999 6.34783 6.70150 7.16191 7.29389 8.82325 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.002452 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.511336 B =11416.982222 C =11993.788849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 H 0.087 0.913 4 C -0.039 4.039 5 C -0.142 4.142 6 C -0.025 4.025 7 C -0.678 4.678 8 S 2.728 3.272 9 N -1.232 6.232 10 O -1.001 7.001 11 O -0.995 6.995 12 C -0.023 4.023 13 C -0.135 4.135 14 N -0.608 5.608 15 C 0.055 3.945 16 C 0.513 3.487 17 O -0.584 6.584 18 C -0.113 4.113 19 C 0.006 3.994 20 C -0.528 4.528 21 H 0.051 0.949 22 C 0.014 3.986 23 N -0.942 5.942 24 Si 0.937 3.063 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.264 1.264 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.430 0.570 34 H 0.430 0.570 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.005 0.995 43 H 0.009 0.991 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.472 -4.924 -28.394 34.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.058 3.942 3 H 0.105 0.895 4 C -0.041 4.041 5 C -0.161 4.161 6 C -0.044 4.044 7 C -0.766 4.766 8 S 2.817 3.183 9 N -0.912 5.912 10 O -0.990 6.990 11 O -0.984 6.984 12 C -0.042 4.042 13 C -0.154 4.154 14 N -0.340 5.340 15 C -0.086 4.086 16 C 0.304 3.696 17 O -0.463 6.463 18 C -0.152 4.152 19 C -0.032 4.032 20 C -0.566 4.566 21 H 0.070 0.930 22 C -0.184 4.184 23 N -0.583 5.583 24 Si 0.762 3.238 25 H -0.192 1.192 26 H -0.204 1.204 27 H -0.189 1.189 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.154 0.846 32 H 0.170 0.830 33 H 0.260 0.740 34 H 0.263 0.737 35 H 0.179 0.821 36 H 0.180 0.820 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.024 0.976 43 H 0.027 0.973 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.203 -4.772 -28.334 33.490 hybrid contribution 0.126 1.273 0.563 1.397 sum -17.077 -3.500 -27.771 32.789 Atomic orbital electron populations 1.22107 0.90719 1.04343 1.03520 1.20141 0.96520 0.96392 0.81142 0.89482 1.20634 0.93886 0.95115 0.94424 1.21412 0.98828 1.01357 0.94532 1.21111 0.93475 0.92379 0.97427 1.30468 1.18135 1.06299 1.21708 1.00484 0.72442 0.72535 0.72800 1.52621 1.34567 1.74423 1.29627 1.93571 1.52669 1.72647 1.80124 1.93571 1.86007 1.34708 1.84163 1.21258 0.90823 1.00526 0.91567 1.21657 1.01341 0.93749 0.98635 1.47997 1.44781 1.17683 1.23568 1.22350 1.01844 0.80904 1.03483 1.21285 0.77558 0.85861 0.84921 1.90620 1.59061 1.21232 1.75437 1.21510 1.00670 0.99753 0.93317 1.19220 0.94700 0.95206 0.94110 1.21408 1.25832 1.02223 1.07130 0.93026 1.25792 0.96156 1.01778 0.94661 1.70020 1.33747 1.39721 1.14782 0.85846 0.78026 0.80690 0.79253 1.19169 1.20389 1.18857 0.89576 0.91899 0.89676 0.84592 0.83013 0.73979 0.73737 0.82058 0.82037 0.91252 0.89760 0.87450 0.87626 0.88458 0.97624 0.97252 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.89 71.98 0.64 -1.28 16 2 C 0.16 3.29 2.95 44.25 0.13 3.42 16 3 H 0.09 2.25 6.67 -2.39 -0.02 2.24 16 4 C -0.04 -0.72 4.96 -19.87 -0.10 -0.82 16 5 C -0.14 -2.71 9.67 22.27 0.22 -2.50 16 6 C -0.02 -0.43 9.52 22.27 0.21 -0.22 16 7 C -0.68 -10.69 5.94 22.27 0.13 -10.56 16 8 S 2.73 41.52 6.28 -56.49 -0.35 41.17 16 9 N -1.23 -6.87 9.55 37.02 0.35 -6.52 16 10 O -1.00 -22.87 17.28 -128.00 -2.21 -25.08 16 11 O -1.00 -21.52 17.28 -128.00 -2.21 -23.73 16 12 C -0.02 -0.33 9.52 22.27 0.21 -0.11 16 13 C -0.14 -1.98 8.13 22.27 0.18 -1.79 16 14 N -0.61 -14.63 2.75 -826.78 -2.28 -16.90 16 15 C 0.06 0.86 8.17 127.77 1.04 1.90 16 16 C 0.51 18.04 7.67 87.66 0.67 18.72 16 17 O -0.58 -25.43 15.32 -3.03 -0.05 -25.47 16 18 C -0.11 -4.25 4.16 29.85 0.12 -4.13 16 19 C 0.01 0.28 3.33 29.84 0.10 0.38 16 20 C -0.53 -30.50 9.66 25.60 0.25 -30.25 16 21 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 22 C 0.01 0.83 5.47 84.66 0.46 1.29 16 23 N -0.94 -59.10 13.96 21.45 0.30 -58.80 16 24 Si 0.94 47.12 27.47 68.60 1.88 49.00 16 25 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.26 -13.30 6.54 99.48 0.65 -12.65 16 28 H 0.09 0.72 6.08 -2.39 -0.01 0.70 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.14 2.48 7.95 -2.91 -0.02 2.46 16 32 H 0.15 2.25 7.62 -2.91 -0.02 2.23 16 33 H 0.43 0.19 8.92 -96.74 -0.86 -0.67 16 34 H 0.43 1.07 8.96 -96.74 -0.87 0.20 16 35 H 0.16 1.69 7.62 -2.91 -0.02 1.67 16 36 H 0.16 1.52 4.96 -2.91 -0.01 1.50 16 37 H 0.07 0.98 6.98 -2.39 -0.02 0.96 16 38 H 0.08 1.36 6.36 -2.39 -0.02 1.34 16 39 H 0.11 0.90 5.53 -2.39 -0.01 0.88 16 40 H 0.11 3.54 7.41 -2.39 -0.02 3.52 16 41 H 0.10 3.42 8.11 -2.39 -0.02 3.40 16 42 H 0.01 0.29 7.16 -2.39 -0.02 0.27 16 43 H 0.01 0.47 7.53 -2.39 -0.02 0.45 16 44 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -87.94 369.14 -1.02 -88.96 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -0.73 Total: 3.33 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 4.28 Total: -25.95 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -1.62 Total: -82.23 kcal Atomic # 8 Polarization: -69.81 SS G_CDS: -4.47 Total: -74.28 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.88 Total: 49.00 kcal Atomic # 16 Polarization: 41.52 SS G_CDS: -0.35 Total: 41.17 kcal Total: -87.94 -1.02 -88.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362428581.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.146 kcal (2) G-P(sol) polarization free energy of solvation -87.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds