Wall clock time and date at job start Sat Apr 11 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.51174 * 2 1 4 4 C 1.52882 * 109.58411 * 239.98313 * 2 1 3 5 5 N 1.47144 * 108.60744 * 187.92318 * 4 2 1 6 6 S 1.65602 * 120.97981 * 230.50014 * 5 4 2 7 7 O 1.42101 * 106.40181 * 139.84054 * 6 5 4 8 8 O 1.42101 * 106.40291 * 6.91905 * 6 5 4 9 9 N 1.65605 * 107.21685 * 253.37970 * 6 5 4 10 10 C 1.39685 * 119.99879 * 63.40966 * 9 6 5 11 11 C 1.39336 * 119.95491 * 310.69079 * 10 9 6 12 12 C 1.38471 * 120.42569 * 179.97438 * 11 10 9 13 13 C 1.37689 * 120.32416 * 359.75781 * 12 11 10 14 14 C 1.40748 * 119.89348 * 0.51540 * 13 12 11 15 15 C 1.41405 * 120.20958 * 179.73595 * 14 13 12 16 16 H 1.08001 * 120.00433 * 198.75059 * 15 14 13 17 17 C 1.39931 * 119.99607 * 18.75375 * 15 14 13 18 18 N 1.30837 * 119.99662 * 210.19084 * 17 15 14 19 19 Si 1.86795 * 120.00392 * 30.19207 * 17 15 14 20 20 H 1.48506 * 109.47334 * 263.58394 * 19 17 15 21 21 H 1.48505 * 109.47062 * 23.58281 * 19 17 15 22 22 H 1.48496 * 109.47414 * 143.58089 * 19 17 15 23 23 C 1.38281 * 119.95015 * 130.70690 * 10 9 6 24 24 C 1.47159 * 118.03984 * 50.22207 * 5 4 2 25 25 H 1.09003 * 109.67671 * 69.43905 * 24 5 4 26 26 C 1.52997 * 109.68313 * 189.99236 * 24 5 4 27 27 C 1.53291 * 108.38182 * 309.71932 * 24 5 4 28 28 O 1.42959 * 109.51334 * 120.10002 * 2 1 3 29 29 H 1.09004 * 109.47555 * 299.90132 * 1 2 3 30 30 H 1.08996 * 109.47247 * 59.90054 * 1 2 3 31 31 H 1.09007 * 109.47286 * 179.89978 * 1 2 3 32 32 H 1.09000 * 109.61680 * 68.10089 * 4 2 1 33 33 H 1.08997 * 109.52152 * 307.68711 * 4 2 1 34 34 H 0.96998 * 119.99771 * 243.41061 * 9 6 5 35 35 H 1.08006 * 119.78183 * 0.02562 * 11 10 9 36 36 H 1.08001 * 119.83728 * 180.02562 * 12 11 10 37 37 H 1.07999 * 120.05201 * 180.27683 * 13 12 11 38 38 H 0.96995 * 119.99968 * 354.91671 * 18 17 15 39 39 H 1.08003 * 120.15746 * 359.96203 * 23 10 9 40 40 H 1.09003 * 109.46911 * 67.05209 * 26 24 5 41 41 H 1.08995 * 109.46764 * 187.05312 * 26 24 5 42 42 H 1.09000 * 109.47180 * 307.05016 * 26 24 5 43 43 H 1.09004 * 109.51166 * 172.22353 * 27 24 5 44 44 H 1.09003 * 109.51325 * 292.32193 * 27 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0424 -0.7206 -1.2472 5 7 3.5011 -0.8767 -1.1332 6 16 4.5064 -0.4191 -2.3670 7 8 5.6340 0.1956 -1.7589 8 8 3.6895 0.2342 -3.3289 9 7 5.0603 -1.8037 -3.0871 10 6 4.1643 -2.6679 -3.7209 11 6 3.0059 -3.0747 -3.0619 12 6 2.1108 -3.9307 -3.6811 13 6 2.3535 -4.3855 -4.9579 14 6 3.5222 -3.9878 -5.6339 15 6 3.7809 -4.4553 -6.9431 16 1 4.7826 -4.4107 -7.3444 17 6 2.7390 -4.9758 -7.7187 18 7 2.9858 -5.9030 -8.6082 19 14 0.9958 -4.3468 -7.4843 20 1 0.2587 -5.2589 -6.5732 21 1 1.0363 -2.9845 -6.8945 22 1 0.3066 -4.2968 -8.7987 23 6 4.4283 -3.1187 -5.0012 24 6 4.0407 -1.4457 0.1121 25 1 3.7756 -2.5009 0.1785 26 6 5.5630 -1.2938 0.1308 27 6 3.4312 -0.6848 1.2951 28 8 2.0075 -0.6758 1.1658 29 1 -0.3634 0.5123 0.8909 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3634 -1.0277 -0.0018 32 1 1.8043 -0.1324 -2.1334 33 1 1.5728 -1.7015 -1.3199 34 1 6.0069 -2.0146 -3.0688 35 1 2.8046 -2.7194 -2.0620 36 1 1.2157 -4.2396 -3.1617 37 1 1.6502 -5.0495 -5.4383 38 1 3.8998 -6.1772 -8.7821 39 1 5.3257 -2.8037 -5.5130 40 1 5.8218 -0.2372 0.2002 41 1 5.9705 -1.8249 0.9910 42 1 5.9810 -1.7110 -0.7853 43 1 3.7091 -1.1775 2.2269 44 1 3.8036 0.3397 1.2998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451109902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:08 Heat of formation + Delta-G solvation = -90.305789 kcal Electronic energy + Delta-G solvation = -29151.475192 eV Core-core repulsion = 25195.683662 eV Total energy + Delta-G solvation = -3955.791530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.74846 -38.25366 -37.33270 -35.76450 -35.43737 -34.86104 -33.59021 -33.24486 -30.39935 -30.09969 -28.23008 -26.46050 -25.61507 -24.96438 -22.52415 -21.67884 -21.18273 -20.82578 -19.21757 -18.42744 -17.55099 -17.16509 -17.04794 -16.38066 -16.00152 -15.80284 -15.09314 -14.88999 -14.68902 -14.50114 -14.18776 -13.81182 -13.34794 -13.17095 -12.87022 -12.66726 -12.55722 -12.43755 -12.23367 -12.13624 -12.01772 -11.95469 -11.80602 -11.73830 -11.70678 -11.36635 -11.10711 -11.03750 -10.69160 -10.57304 -10.52983 -10.21084 -10.02501 -9.76606 -9.40462 -9.03174 -8.89664 -7.92248 -7.48891 -7.42426 -4.64519 0.66795 2.46814 2.59487 2.90097 3.14513 3.32335 3.51590 3.54378 3.61319 3.93148 4.34735 4.38629 4.47797 4.57135 4.79962 4.89887 4.93211 5.07718 5.18828 5.29064 5.35692 5.40631 5.47027 5.52861 5.60444 5.67485 5.77146 5.82309 5.92795 6.02670 6.06654 6.18338 6.23380 6.41244 6.46945 6.63168 6.83406 6.98976 6.99633 7.36082 7.38223 7.53252 7.58404 7.71091 7.91479 8.30590 8.47653 8.65042 9.80783 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.003973 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.121694 B = 7045.931475 C = 7896.625820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.077 3.923 3 H 0.061 0.939 4 C 0.086 3.914 5 N -1.002 6.002 6 S 2.791 3.209 7 O -0.984 6.984 8 O -0.968 6.968 9 N -1.064 6.064 10 C 0.183 3.817 11 C -0.298 4.298 12 C -0.049 4.049 13 C -0.259 4.259 14 C 0.111 3.889 15 C -0.511 4.511 16 H 0.078 0.922 17 C 0.048 3.952 18 N -0.794 5.794 19 Si 1.072 2.928 20 H -0.275 1.275 21 H -0.259 1.259 22 H -0.289 1.289 23 C -0.227 4.227 24 C 0.119 3.881 25 H 0.086 0.914 26 C -0.181 4.181 27 C 0.058 3.942 28 O -0.376 6.376 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.414 0.586 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.289 0.711 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.113 8.048 16.578 18.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.017 3.983 3 H 0.079 0.921 4 C -0.040 4.040 5 N -0.843 5.843 6 S 2.801 3.199 7 O -0.968 6.968 8 O -0.951 6.951 9 N -0.817 5.817 10 C 0.089 3.911 11 C -0.320 4.320 12 C -0.068 4.068 13 C -0.278 4.278 14 C 0.107 3.893 15 C -0.538 4.538 16 H 0.096 0.904 17 C -0.175 4.175 18 N -0.415 5.415 19 Si 0.897 3.103 20 H -0.201 1.201 21 H -0.183 1.183 22 H -0.216 1.216 23 C -0.251 4.251 24 C 0.013 3.987 25 H 0.104 0.896 26 C -0.239 4.239 27 C -0.020 4.020 28 O -0.294 6.294 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.250 0.750 35 H 0.129 0.871 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.122 0.878 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.632 8.662 15.863 18.265 hybrid contribution 2.453 -0.469 0.239 2.509 sum -0.179 8.193 16.102 18.068 Atomic orbital electron populations 1.21745 0.92139 1.03505 1.02823 1.22382 0.95517 0.95189 0.85190 0.92115 1.22242 0.79178 1.02911 0.99620 1.58230 1.17070 1.79579 1.29390 1.01820 0.72732 0.72829 0.72488 1.93634 1.51821 1.74784 1.76565 1.93604 1.69520 1.72606 1.59396 1.53486 1.16724 1.41617 1.69885 1.17059 0.89986 0.92530 0.91529 1.20608 0.99468 1.10881 1.01039 1.20360 0.96711 0.95209 0.94520 1.21036 1.01449 1.08816 0.96498 1.17503 0.90429 0.88158 0.93174 1.20658 0.97723 1.36612 0.98815 0.90422 1.27394 1.07247 0.90474 0.92363 1.70569 1.25529 1.16311 1.29060 0.83645 0.72241 0.78616 0.75775 1.20134 1.18342 1.21615 1.20833 1.03637 1.06395 0.94190 1.21669 0.94123 0.98678 0.84205 0.89607 1.22530 0.92625 1.05545 1.03200 1.22959 0.81248 1.00057 0.97733 1.87937 1.20669 1.77604 1.43207 0.91565 0.90516 0.91294 0.87490 0.89559 0.75047 0.87101 0.88338 0.87867 0.89899 0.88240 0.88625 0.90556 0.92050 0.87844 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.57 37.15 0.36 -0.93 16 2 C 0.08 0.84 3.39 -26.79 -0.09 0.75 16 3 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 4 C 0.09 1.12 4.94 -3.75 -0.02 1.10 16 5 N -1.00 -13.72 1.94 -106.27 -0.21 -13.93 16 6 S 2.79 45.96 5.17 -107.50 -0.56 45.40 16 7 O -0.98 -16.21 13.95 -57.17 -0.80 -17.01 16 8 O -0.97 -19.38 16.26 -57.17 -0.93 -20.31 16 9 N -1.06 -18.07 5.16 32.38 0.17 -17.91 16 10 C 0.18 3.77 6.01 -83.86 -0.50 3.26 16 11 C -0.30 -5.89 9.05 -39.09 -0.35 -6.24 16 12 C -0.05 -1.02 10.01 -39.70 -0.40 -1.41 16 13 C -0.26 -6.07 7.58 -38.83 -0.29 -6.37 16 14 C 0.11 2.80 5.29 -106.85 -0.56 2.23 16 15 C -0.51 -13.42 9.36 -37.74 -0.35 -13.78 16 16 H 0.08 2.09 8.06 -52.49 -0.42 1.67 16 17 C 0.05 1.23 5.28 -17.34 -0.09 1.13 16 18 N -0.79 -20.55 13.66 55.55 0.76 -19.79 16 19 Si 1.07 23.64 25.09 -169.99 -4.26 19.38 16 20 H -0.27 -5.71 6.55 56.52 0.37 -5.34 16 21 H -0.26 -5.76 7.10 56.52 0.40 -5.36 16 22 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.23 -5.31 9.71 -38.68 -0.38 -5.68 16 24 C 0.12 1.35 3.66 -67.42 -0.25 1.11 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 C -0.18 -1.95 7.64 37.16 0.28 -1.66 16 27 C 0.06 0.58 6.29 37.31 0.23 0.82 16 28 O -0.38 -4.34 10.39 -35.23 -0.37 -4.71 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.11 1.48 6.74 -51.93 -0.35 1.13 16 33 H 0.09 1.12 6.63 -51.93 -0.34 0.77 16 34 H 0.41 5.99 8.80 -34.47 -0.30 5.69 16 35 H 0.11 1.87 3.70 -52.48 -0.19 1.68 16 36 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.10 2.39 4.19 -52.49 -0.22 2.17 16 38 H 0.29 7.26 8.73 -40.82 -0.36 6.90 16 39 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 40 H 0.10 1.12 6.54 -51.93 -0.34 0.78 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.72 5.91 -51.93 -0.31 0.41 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -30.24 350.63 -9.22 -39.46 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.89 Total: 9.80 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -2.42 Total: -25.68 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.72 Total: -51.62 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -2.09 Total: -42.03 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -4.26 Total: 19.38 kcal Atomic # 16 Polarization: 45.96 SS G_CDS: -0.56 Total: 45.40 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.24 -9.22 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451109902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.844 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds