Wall clock time and date at job start Sat Apr 11 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35680 * 116.99731 * 2 1 4 4 C 1.38918 * 119.68308 * 180.02562 * 3 2 1 5 5 C 1.38384 * 119.10954 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.75696 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46946 * 20.00332 * 6 5 4 8 8 C 1.53000 * 109.47269 * 259.99886 * 6 5 4 9 9 N 1.46506 * 109.46969 * 139.99908 * 6 5 4 10 10 S 1.65595 * 119.99774 * 215.00091 * 9 6 5 11 11 O 1.42101 * 104.27824 * 308.93099 * 10 9 6 12 12 O 1.42102 * 104.27554 * 181.07292 * 10 9 6 13 13 C 1.81395 * 104.45046 * 65.00110 * 10 9 6 14 14 C 1.53000 * 109.47435 * 177.04861 * 13 10 9 15 15 C 1.50699 * 115.54929 * 306.45896 * 14 13 10 16 16 H 1.07994 * 120.00330 * 102.46284 * 15 14 13 17 17 C 1.37884 * 120.00029 * 282.19286 * 15 14 13 18 18 N 1.31512 * 119.99858 * 198.17535 * 17 15 14 19 19 Si 1.86798 * 119.99953 * 18.16802 * 17 15 14 20 20 H 1.48499 * 109.46873 * 84.38287 * 19 17 15 21 21 H 1.48498 * 109.47285 * 204.38557 * 19 17 15 22 22 H 1.48503 * 109.47355 * 324.38619 * 19 17 15 23 23 C 1.53003 * 117.52018 * 92.15801 * 14 13 10 24 24 C 1.52997 * 60.00080 * 107.48695 * 23 14 13 25 25 C 1.38832 * 118.48735 * 0.26671 * 5 4 3 26 26 C 1.38053 * 119.28464 * 359.48135 * 25 5 4 27 27 N 1.31963 * 120.83441 * 0.53262 * 26 25 5 28 28 H 1.08996 * 109.47032 * 60.00475 * 1 2 3 29 29 H 1.09001 * 109.46835 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46966 * 300.00301 * 1 2 3 31 31 H 1.07996 * 120.45021 * 359.96873 * 4 3 2 32 32 H 1.08996 * 109.47190 * 179.97438 * 8 6 5 33 33 H 1.08996 * 109.47100 * 299.99819 * 8 6 5 34 34 H 1.09003 * 109.46735 * 60.00158 * 8 6 5 35 35 H 0.96998 * 120.00049 * 35.00066 * 9 6 5 36 36 H 1.09004 * 109.47237 * 57.04880 * 13 10 9 37 37 H 1.09002 * 109.47709 * 297.04850 * 13 10 9 38 38 H 0.97008 * 119.99627 * 179.97438 * 18 17 15 39 39 H 1.08995 * 117.49669 * 214.97856 * 23 14 13 40 40 H 1.08994 * 117.49641 * 359.97438 * 23 14 13 41 41 H 1.09002 * 117.49346 * 252.51417 * 24 23 14 42 42 H 1.08997 * 117.52220 * 107.48531 * 24 23 14 43 43 H 1.07994 * 120.35822 * 179.72697 * 25 5 4 44 44 H 1.08000 * 119.57827 * 180.24457 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5133 -0.0011 6 6 5.5511 2.6272 -0.0011 7 1 5.9863 1.6915 -0.3522 8 6 6.0407 2.9161 1.4194 9 7 5.9581 3.7188 -0.8895 10 16 7.3551 3.5928 -1.7696 11 8 8.3416 3.2338 -0.8118 12 8 7.4350 4.8220 -2.4780 13 6 7.0477 2.2182 -2.9125 14 6 8.2520 2.0475 -3.8407 15 6 8.6820 3.2870 -4.5821 16 1 9.5452 3.8436 -4.2485 17 6 7.9766 3.7074 -5.6897 18 7 8.5259 4.5478 -6.5391 19 14 6.2408 3.0830 -5.9839 20 1 5.2791 3.9142 -5.2163 21 1 5.9229 3.1680 -7.4320 22 1 6.1406 1.6702 -5.5373 23 6 9.3451 1.0684 -3.4077 24 6 8.4056 0.7055 -4.5594 25 6 3.2504 3.6493 0.0046 26 6 1.8769 3.5097 -0.0003 27 7 1.3185 2.3141 0.0002 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0229 0.3697 -0.0005 32 1 7.1276 2.9980 1.4194 33 1 5.6055 3.8517 1.7704 34 1 5.7379 2.1039 2.0803 35 1 5.4093 4.5152 -0.9621 36 1 6.1587 2.4312 -3.5062 37 1 6.8940 1.3007 -2.3445 38 1 8.0297 4.8433 -7.3186 39 1 10.3752 1.3209 -3.6590 40 1 9.2066 0.5460 -2.4611 41 1 7.6488 -0.0559 -4.3706 42 1 8.8172 0.7192 -5.5685 43 1 3.6991 4.6316 0.0088 44 1 1.2516 4.3903 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451564162.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:23 Heat of formation + Delta-G solvation = -70.388447 kcal Electronic energy + Delta-G solvation = -28240.222153 eV Core-core repulsion = 24285.294304 eV Total energy + Delta-G solvation = -3954.927849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.70980 -39.30207 -38.78113 -38.01943 -37.32726 -36.76583 -34.30828 -33.16518 -31.61743 -30.43148 -30.18803 -28.16501 -27.56469 -25.13681 -24.50778 -23.23121 -22.24178 -21.40766 -20.33701 -19.28610 -18.68793 -18.42729 -18.07673 -17.13471 -17.01730 -16.94776 -16.78337 -16.57005 -15.84446 -15.65091 -15.45767 -15.03260 -14.94436 -14.77233 -14.49253 -14.39036 -14.15079 -14.09518 -13.42571 -13.20894 -13.17953 -12.89663 -12.86780 -12.75760 -12.70893 -12.47903 -12.33706 -12.17127 -12.14284 -12.10277 -11.85896 -11.69763 -11.01118 -10.81534 -10.71559 -10.67571 -10.49637 -10.16224 -9.51889 -8.36246 -6.41000 -0.59986 0.13379 0.20428 1.28568 1.31057 1.41362 1.91979 2.14934 2.32435 2.74145 2.92009 2.96650 3.14283 3.30457 3.39260 3.49987 3.80080 3.81768 4.02061 4.07779 4.13854 4.27200 4.31521 4.38206 4.40415 4.44056 4.45352 4.46641 4.60834 4.74102 4.76199 4.83160 4.91173 4.95924 4.97788 4.99263 5.21774 5.33591 5.35918 5.44050 5.51299 5.65119 6.04329 6.21130 6.23159 6.67890 6.82946 7.29381 8.80593 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.003946 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.414025 B = 7094.062925 C = 7736.195525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.321 6.321 3 C 0.303 3.697 4 C -0.188 4.188 5 C -0.011 4.011 6 C 0.184 3.816 7 H 0.112 0.888 8 C -0.166 4.166 9 N -1.114 6.114 10 S 2.622 3.378 11 O -0.982 6.982 12 O -0.983 6.983 13 C -0.582 4.582 14 C -0.033 4.033 15 C -0.520 4.520 16 H 0.031 0.969 17 C 0.046 3.954 18 N -0.930 5.930 19 Si 0.896 3.104 20 H -0.263 1.263 21 H -0.288 1.288 22 H -0.209 1.209 23 C -0.170 4.170 24 C -0.161 4.161 25 C -0.203 4.203 26 C 0.137 3.863 27 N -0.556 5.556 28 H 0.053 0.947 29 H 0.120 0.880 30 H 0.058 0.942 31 H 0.161 0.839 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.422 0.578 36 H 0.119 0.881 37 H 0.159 0.841 38 H 0.268 0.732 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.155 0.845 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.187 -9.555 16.786 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.228 6.228 3 C 0.125 3.875 4 C -0.209 4.209 5 C -0.021 4.021 6 C 0.078 3.922 7 H 0.130 0.870 8 C -0.225 4.225 9 N -0.874 5.874 10 S 2.719 3.281 11 O -0.972 6.972 12 O -0.973 6.973 13 C -0.713 4.713 14 C -0.035 4.035 15 C -0.557 4.557 16 H 0.050 0.950 17 C -0.155 4.155 18 N -0.567 5.567 19 Si 0.718 3.282 20 H -0.188 1.188 21 H -0.215 1.215 22 H -0.131 1.131 23 C -0.206 4.206 24 C -0.200 4.200 25 C -0.224 4.224 26 C -0.018 4.018 27 N -0.281 5.281 28 H 0.072 0.928 29 H 0.138 0.862 30 H 0.077 0.923 31 H 0.178 0.822 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.259 0.741 36 H 0.137 0.863 37 H 0.177 0.823 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.094 0.906 43 H 0.173 0.827 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -17.121 -9.398 16.772 25.744 hybrid contribution -0.397 0.615 -1.091 1.314 sum -17.518 -8.783 15.681 25.098 Atomic orbital electron populations 1.23029 0.75936 1.04534 1.02173 1.86222 1.24274 1.24454 1.87839 1.20014 0.89769 0.85048 0.92681 1.21083 0.92076 0.99601 1.08158 1.20194 0.95388 0.92809 0.93681 1.19868 0.89897 0.90259 0.92200 0.87036 1.22320 1.02444 1.03811 0.93935 1.55848 1.45113 1.28166 1.58309 1.04419 0.73393 0.76192 0.74136 1.93486 1.58309 1.85591 1.59834 1.93564 1.85343 1.43422 1.74981 1.30221 1.06891 1.20260 1.13944 1.18711 0.93943 0.91336 0.99513 1.20381 1.13866 1.09316 1.12095 0.95030 1.25680 1.01505 0.94198 0.94150 1.70096 1.38636 1.35537 1.12432 0.86559 0.81017 0.82748 0.77845 1.18802 1.21472 1.13070 1.23082 0.95499 1.02660 0.99405 1.23040 1.02599 0.97733 0.96596 1.22064 0.94832 1.00250 1.05222 1.22852 0.93135 0.93977 0.91818 1.67341 1.41542 0.99380 1.19827 0.92800 0.86152 0.92320 0.82180 0.91508 0.90995 0.89251 0.74149 0.86263 0.82281 0.92313 0.90296 0.86546 0.87075 0.90563 0.82745 0.79618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.38 113.37 1.18 1.71 16 2 O -0.32 -6.45 10.48 -89.98 -0.94 -7.39 16 3 C 0.30 6.46 7.49 84.79 0.63 7.10 16 4 C -0.19 -3.54 9.71 22.47 0.22 -3.32 16 5 C -0.01 -0.21 4.97 -19.69 -0.10 -0.31 16 6 C 0.18 3.64 2.91 44.24 0.13 3.77 16 7 H 0.11 1.85 7.11 -2.39 -0.02 1.83 16 8 C -0.17 -2.98 9.50 71.98 0.68 -2.30 16 9 N -1.11 -28.49 5.32 -172.51 -0.92 -29.40 16 10 S 2.62 98.34 5.08 -56.49 -0.29 98.06 16 11 O -0.98 -39.05 17.11 -127.65 -2.18 -41.24 16 12 O -0.98 -47.93 16.83 -127.65 -2.15 -50.08 16 13 C -0.58 -20.45 5.47 71.98 0.39 -20.05 16 14 C -0.03 -1.42 0.93 -52.93 -0.05 -1.47 16 15 C -0.52 -29.61 7.59 25.60 0.19 -29.42 16 16 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 17 C 0.05 2.66 5.46 84.66 0.46 3.12 16 18 N -0.93 -58.83 13.96 21.45 0.30 -58.53 16 19 Si 0.90 41.73 25.05 68.60 1.72 43.45 16 20 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 22 H -0.21 -8.26 6.10 99.48 0.61 -7.65 16 23 C -0.17 -6.36 9.92 30.59 0.30 -6.05 16 24 C -0.16 -6.03 8.56 30.59 0.26 -5.77 16 25 C -0.20 -3.45 9.25 22.37 0.21 -3.24 16 26 C 0.14 2.33 11.18 84.63 0.95 3.28 16 27 N -0.56 -11.61 9.22 -308.94 -2.85 -14.46 16 28 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 29 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.07 1.47 7.42 -2.39 -0.02 1.45 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.42 9.42 7.14 -96.75 -0.69 8.73 16 36 H 0.12 4.14 5.12 -2.39 -0.01 4.13 16 37 H 0.16 3.86 7.47 -2.39 -0.02 3.84 16 38 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 39 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.15 2.05 6.93 -2.91 -0.02 2.03 16 44 H 0.19 2.01 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -81.10 373.54 -1.62 -82.72 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.23 Total: 29.83 kcal Atomic # 6 Polarization: -58.42 SS G_CDS: 5.46 Total: -52.96 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -3.47 Total: -102.39 kcal Atomic # 8 Polarization: -93.43 SS G_CDS: -5.28 Total: -98.71 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.72 Total: 43.45 kcal Atomic # 16 Polarization: 98.34 SS G_CDS: -0.29 Total: 98.06 kcal Total: -81.10 -1.62 -82.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451564162.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.327 kcal (2) G-P(sol) polarization free energy of solvation -81.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds