Wall clock time and date at job start Sat Apr 11 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00116 * 2 1 4 4 C 1.53001 * 109.47332 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47020 * 63.49643 * 4 3 2 6 6 C 1.36935 * 120.00443 * 264.83607 * 5 4 3 7 7 H 1.08006 * 119.99322 * 322.13850 * 6 5 4 8 8 C 1.38800 * 120.00530 * 142.13698 * 6 5 4 9 9 N 1.31620 * 120.00458 * 159.55720 * 8 6 5 10 10 Si 1.86806 * 119.99978 * 339.55994 * 8 6 5 11 11 H 1.48502 * 109.47293 * 95.28685 * 10 8 6 12 12 H 1.48501 * 109.47042 * 215.28629 * 10 8 6 13 13 H 1.48503 * 109.46847 * 335.28831 * 10 8 6 14 14 C 1.46509 * 119.99688 * 84.83636 * 5 4 3 15 15 C 1.50702 * 109.46917 * 90.00170 * 14 5 4 16 16 O 1.21279 * 120.00013 * 359.97438 * 15 14 5 17 17 N 1.34775 * 119.99608 * 180.02562 * 15 14 5 18 18 C 1.46504 * 119.99622 * 180.02562 * 17 15 14 19 19 H 1.08996 * 109.47310 * 34.99249 * 18 17 15 20 20 C 1.52998 * 109.46866 * 274.99220 * 18 17 15 21 21 C 1.50698 * 109.47186 * 154.99654 * 18 17 15 22 22 C 1.38240 * 119.98969 * 219.99622 * 21 18 17 23 23 C 1.38217 * 120.01670 * 180.02562 * 22 21 18 24 24 C 1.38353 * 119.98512 * 359.97438 * 23 22 21 25 25 Cl 1.73598 * 120.01307 * 180.02562 * 24 23 22 26 26 C 1.38355 * 119.97198 * 0.27532 * 24 23 22 27 27 C 1.38215 * 119.98657 * 359.48857 * 26 24 23 28 28 H 1.08999 * 109.47251 * 300.00020 * 1 2 3 29 29 H 1.08990 * 109.47063 * 60.00143 * 1 2 3 30 30 H 1.09003 * 109.47108 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47276 * 59.99393 * 3 2 1 32 32 H 1.08997 * 109.46768 * 300.00052 * 3 2 1 33 33 H 1.09000 * 109.46760 * 303.49453 * 4 3 2 34 34 H 1.09002 * 109.46764 * 183.50033 * 4 3 2 35 35 H 0.96998 * 120.00357 * 180.02562 * 9 8 6 36 36 H 1.08990 * 109.47438 * 329.99720 * 14 5 4 37 37 H 1.08998 * 109.46790 * 209.99799 * 14 5 4 38 38 H 0.96997 * 120.00274 * 359.97438 * 17 15 14 39 39 H 1.08997 * 109.47309 * 180.02562 * 20 18 17 40 40 H 1.09004 * 109.47064 * 300.00365 * 20 18 17 41 41 H 1.09002 * 109.47235 * 59.99999 * 20 18 17 42 42 H 1.08004 * 119.98837 * 0.02562 * 22 21 18 43 43 H 1.08001 * 120.00459 * 180.02562 * 23 22 21 44 44 H 1.08004 * 120.00427 * 179.72809 * 26 24 23 45 45 H 1.08001 * 119.98844 * 180.23364 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9741 0.5315 -1.2351 6 6 4.1970 -0.8195 -1.2536 7 1 4.6467 -1.3043 -0.3997 8 6 3.8451 -1.5658 -2.3698 9 7 4.3967 -2.7431 -2.5750 10 14 2.5885 -0.8993 -3.5807 11 1 3.2907 -0.2232 -4.7010 12 1 1.7713 -2.0194 -4.1128 13 1 1.7045 0.0744 -2.8910 14 6 4.1742 1.3237 -2.4512 15 6 5.5984 1.8139 -2.5025 16 8 6.3700 1.5299 -1.6110 17 7 6.0142 2.5687 -3.5388 18 6 7.3988 3.0448 -3.5890 19 1 8.0585 2.2892 -3.1627 20 6 7.5218 4.3411 -2.7856 21 6 7.7897 3.3027 -5.0214 22 6 9.0516 2.9556 -5.4665 23 6 9.4109 3.1923 -6.7800 24 6 8.5071 3.7763 -7.6496 25 17 8.9573 4.0733 -9.2996 26 6 7.2460 4.1282 -7.2022 27 6 6.8862 3.8865 -5.8898 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8465 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8525 0.5908 0.8579 34 1 3.9786 2.1786 0.0634 35 1 4.1510 -3.2644 -3.3552 36 1 3.4962 2.1770 -2.4446 37 1 3.9712 0.7050 -3.3253 38 1 5.3970 2.7961 -4.2516 39 1 8.5518 4.6956 -2.8233 40 1 6.8619 5.0967 -3.2120 41 1 7.2390 4.1546 -1.7496 42 1 9.7569 2.4993 -4.7876 43 1 10.3967 2.9207 -7.1276 44 1 6.5415 4.5881 -7.8795 45 1 5.9006 4.1577 -5.5415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459538700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:30 Heat of formation + Delta-G solvation = -52.584180 kcal Electronic energy + Delta-G solvation = -27478.629818 eV Core-core repulsion = 23522.430314 eV Total energy + Delta-G solvation = -3956.199504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.14736 -40.08888 -38.79972 -37.67208 -37.02282 -36.10983 -33.76579 -32.81354 -32.05535 -30.95403 -30.04559 -28.45182 -27.17400 -25.26747 -24.77791 -24.00521 -22.58448 -21.69141 -21.19570 -19.31575 -18.34492 -17.94037 -17.32292 -17.28725 -17.05707 -16.63629 -16.25162 -15.98598 -15.79771 -15.66293 -15.15566 -14.94387 -14.77672 -14.56756 -14.48179 -14.36894 -14.27109 -13.95157 -13.52876 -13.26159 -13.05036 -12.83318 -12.74896 -12.55179 -12.52782 -12.31971 -12.28146 -12.01905 -11.98711 -11.79797 -11.77208 -11.49842 -10.87044 -10.54983 -10.34806 -10.08189 -10.03295 -9.61605 -8.75776 -8.09678 -5.49825 0.05277 0.27927 1.12205 1.26679 1.45176 1.57657 1.87377 2.23985 2.48477 2.62257 3.07464 3.27678 3.37334 3.52745 3.76385 3.91302 4.08398 4.21860 4.26817 4.36936 4.37208 4.39127 4.44636 4.47024 4.48704 4.60528 4.65236 4.66062 4.73840 4.75921 4.79803 4.89726 4.91463 4.98978 5.14238 5.20707 5.22538 5.25892 5.41331 5.67092 5.75188 5.96847 6.23608 6.56544 6.64938 7.02514 7.47209 7.67502 8.03032 9.11437 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.002760 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.683329 B =10142.288120 C =10729.375502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.046 3.954 4 C 0.149 3.851 5 N -0.585 5.585 6 C -0.225 4.225 7 H 0.022 0.978 8 C -0.029 4.029 9 N -0.962 5.962 10 Si 0.947 3.053 11 H -0.268 1.268 12 H -0.316 1.316 13 H -0.239 1.239 14 C 0.112 3.888 15 C 0.489 3.511 16 O -0.564 6.564 17 N -0.724 5.724 18 C 0.181 3.819 19 H 0.067 0.933 20 C -0.145 4.145 21 C -0.089 4.089 22 C -0.105 4.105 23 C -0.110 4.110 24 C -0.047 4.047 25 Cl -0.072 7.072 26 C -0.108 4.108 27 C -0.102 4.102 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.259 0.741 36 H 0.116 0.884 37 H 0.066 0.934 38 H 0.408 0.592 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.140 0.860 43 H 0.148 0.852 44 H 0.153 0.847 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 21.192 -9.319 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C -0.033 4.033 4 C 0.024 3.976 5 N -0.305 5.305 6 C -0.355 4.355 7 H 0.040 0.960 8 C -0.223 4.223 9 N -0.607 5.607 10 Si 0.775 3.225 11 H -0.196 1.196 12 H -0.246 1.246 13 H -0.162 1.162 14 C -0.017 4.017 15 C 0.274 3.726 16 O -0.441 6.441 17 N -0.380 5.380 18 C 0.076 3.924 19 H 0.085 0.915 20 C -0.204 4.204 21 C -0.090 4.090 22 C -0.124 4.124 23 C -0.129 4.129 24 C -0.073 4.073 25 Cl -0.043 7.043 26 C -0.126 4.126 27 C -0.120 4.120 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.245 0.755 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.158 0.842 43 H 0.165 0.835 44 H 0.171 0.829 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.227 20.713 -8.845 22.632 hybrid contribution -0.541 -0.434 -0.925 1.156 sum 1.687 20.280 -9.770 22.573 Atomic orbital electron populations 1.22826 0.81332 1.02639 1.00317 1.88139 1.19852 1.28859 1.95266 1.23282 0.95535 0.84394 1.00049 1.21123 0.91285 0.96972 0.88267 1.43648 1.76098 1.03199 1.07547 1.18365 1.32069 0.83086 1.01984 0.96034 1.26084 0.99690 0.95581 1.00948 1.70030 1.44582 1.16041 1.30068 0.85815 0.80755 0.77549 0.78347 1.19568 1.24561 1.16170 1.21466 0.92037 0.96705 0.91518 1.22647 0.92383 0.76317 0.81208 1.90611 1.56879 1.57033 1.39568 1.46295 1.12406 1.54027 1.25263 1.19717 0.83738 0.96913 0.91992 0.91519 1.22054 1.03288 0.95712 0.99313 1.20056 0.95098 0.98967 0.94869 1.21174 0.96349 0.99164 0.95667 1.21215 1.00267 0.98737 0.92686 1.21139 0.96259 1.03580 0.86343 1.98372 1.92781 1.94682 1.18438 1.21270 0.94946 0.99947 0.96439 1.21127 1.00276 0.98106 0.92499 0.92419 0.94239 0.90393 0.91348 0.93402 0.93972 0.90120 0.93257 0.86638 0.91635 0.75476 0.90446 0.90491 0.93546 0.84228 0.83464 0.82891 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 1.99 16 2 O -0.40 -16.08 10.36 -148.98 -1.54 -17.63 16 3 C 0.05 1.51 6.29 71.98 0.45 1.96 16 4 C 0.15 5.81 6.08 86.38 0.53 6.34 16 5 N -0.58 -27.54 1.51 -706.34 -1.07 -28.61 16 6 C -0.22 -13.35 9.63 84.03 0.81 -12.54 16 7 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 8 C -0.03 -1.73 5.33 84.86 0.45 -1.27 16 9 N -0.96 -62.94 13.97 21.65 0.30 -62.63 16 10 Si 0.95 45.29 24.92 68.60 1.71 47.00 16 11 H -0.27 -11.62 6.69 99.48 0.67 -10.95 16 12 H -0.32 -15.79 7.11 99.48 0.71 -15.08 16 13 H -0.24 -10.35 7.11 99.48 0.71 -9.64 16 14 C 0.11 4.39 4.99 85.63 0.43 4.81 16 15 C 0.49 18.88 7.86 87.66 0.69 19.57 16 16 O -0.56 -27.08 16.09 -3.03 -0.05 -27.13 16 17 N -0.72 -20.25 5.03 -446.10 -2.24 -22.49 16 18 C 0.18 4.57 2.78 44.24 0.12 4.69 16 19 H 0.07 2.10 7.44 -2.39 -0.02 2.09 16 20 C -0.15 -3.05 9.46 71.98 0.68 -2.37 16 21 C -0.09 -1.85 4.95 -19.86 -0.10 -1.94 16 22 C -0.10 -2.08 9.67 22.27 0.22 -1.87 16 23 C -0.11 -2.00 9.83 22.29 0.22 -1.78 16 24 C -0.05 -0.84 6.32 22.33 0.14 -0.70 16 25 Cl -0.07 -1.22 28.96 -2.72 -0.08 -1.30 16 26 C -0.11 -1.75 9.83 22.29 0.22 -1.53 16 27 C -0.10 -1.72 9.05 22.27 0.20 -1.52 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.83 8.00 -2.39 -0.02 1.81 16 34 H 0.08 2.68 8.11 -2.39 -0.02 2.66 16 35 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 36 H 0.12 3.37 8.07 -2.39 -0.02 3.35 16 37 H 0.07 2.78 3.15 -2.39 -0.01 2.77 16 38 H 0.41 8.73 6.87 -92.71 -0.64 8.09 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.14 2.54 8.04 -2.91 -0.02 2.51 16 43 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 44 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 45 H 0.15 1.87 6.92 -2.91 -0.02 1.85 16 Total: -1.00 -80.90 389.05 3.65 -77.25 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.32 Total: 21.72 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 6.31 Total: 13.83 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -3.01 Total: -113.73 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -1.59 Total: -44.76 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.71 Total: 47.00 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -80.90 3.65 -77.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459538700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.663 kcal (2) G-P(sol) polarization free energy of solvation -80.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds