Wall clock time and date at job start Sat Apr 11 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00044 * 2 1 4 4 C 1.53009 * 109.46735 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46592 * 65.00197 * 4 3 2 6 6 C 1.36939 * 119.99936 * 264.44801 * 5 4 3 7 7 H 1.08002 * 119.99896 * 11.17431 * 6 5 4 8 8 C 1.38808 * 119.99716 * 191.17097 * 6 5 4 9 9 N 1.31618 * 120.00454 * 25.51079 * 8 6 5 10 10 Si 1.86799 * 119.99862 * 205.50497 * 8 6 5 11 11 H 1.48495 * 109.47144 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47278 * 120.00394 * 10 8 6 13 13 H 1.48508 * 109.47364 * 240.00193 * 10 8 6 14 14 C 1.46501 * 119.99998 * 84.45578 * 5 4 3 15 15 C 1.50697 * 109.47197 * 89.99432 * 14 5 4 16 16 O 1.21278 * 120.00413 * 0.02562 * 15 14 5 17 17 N 1.34780 * 119.99936 * 179.72489 * 15 14 5 18 18 C 1.46500 * 120.00118 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.47074 * 324.99841 * 18 17 15 20 20 C 1.52998 * 109.47040 * 85.00090 * 18 17 15 21 21 C 1.50704 * 109.47215 * 204.99828 * 18 17 15 22 22 C 1.38238 * 119.98300 * 319.72734 * 21 18 17 23 23 C 1.38226 * 120.00798 * 179.72209 * 22 21 18 24 24 C 1.38350 * 119.98551 * 0.55325 * 23 22 21 25 25 Cl 1.73597 * 120.01086 * 179.70382 * 24 23 22 26 26 C 1.38353 * 119.97376 * 359.72041 * 24 23 22 27 27 C 1.38217 * 119.98641 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.47032 * 300.00117 * 1 2 3 29 29 H 1.09006 * 109.46728 * 59.99608 * 1 2 3 30 30 H 1.08994 * 109.47493 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47137 * 60.00213 * 3 2 1 32 32 H 1.08994 * 109.47399 * 299.99594 * 3 2 1 33 33 H 1.08993 * 109.46979 * 305.00551 * 4 3 2 34 34 H 1.08998 * 109.46822 * 184.99869 * 4 3 2 35 35 H 0.96996 * 120.00488 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.46999 * 329.99301 * 14 5 4 37 37 H 1.09004 * 109.46988 * 209.99830 * 14 5 4 38 38 H 0.96998 * 119.99859 * 359.97438 * 17 15 14 39 39 H 1.09004 * 109.47663 * 59.99742 * 20 18 17 40 40 H 1.08998 * 109.47490 * 180.02562 * 20 18 17 41 41 H 1.09007 * 109.47230 * 299.99935 * 20 18 17 42 42 H 1.07995 * 119.99990 * 0.02562 * 22 21 18 43 43 H 1.07998 * 120.00336 * 180.27036 * 23 22 21 44 44 H 1.07993 * 120.00750 * 179.97438 * 26 24 23 45 45 H 1.08003 * 119.99110 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9766 0.5638 -1.2510 6 6 4.2071 -0.7851 -1.3022 7 1 3.8954 -1.4177 -0.4842 8 6 4.8414 -1.3393 -2.4056 9 7 5.6488 -0.6031 -3.1393 10 14 4.5490 -3.1302 -2.8490 11 1 3.6059 -3.7340 -1.8738 12 1 3.9700 -3.2141 -4.2140 13 1 5.8383 -3.8662 -2.8123 14 6 4.1713 1.3862 -2.4476 15 6 5.5925 1.8855 -2.4883 16 8 6.3668 1.5838 -1.6050 17 7 6.0049 2.6625 -3.5095 18 6 7.3867 3.1475 -3.5493 19 1 7.7304 3.3491 -2.5348 20 6 8.2820 2.0846 -4.1894 21 6 7.4511 4.4146 -4.3626 22 6 6.7084 4.5293 -5.5229 23 6 6.7627 5.6934 -6.2662 24 6 7.5693 6.7395 -5.8549 25 17 7.6439 8.1988 -6.7920 26 6 8.3167 6.6218 -4.6966 27 6 8.2576 5.4593 -3.9513 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5683 0.8426 34 1 3.9786 2.1763 0.0902 35 1 6.0923 -0.9905 -3.9100 36 1 3.4885 2.2353 -2.4199 37 1 3.9708 0.7877 -3.3363 38 1 5.3869 2.8999 -4.2184 39 1 7.9383 1.8830 -5.2040 40 1 9.3102 2.4452 -4.2186 41 1 8.2354 1.1681 -3.6011 42 1 6.0819 3.7112 -5.8460 43 1 6.1790 5.7846 -7.1703 44 1 8.9469 7.4378 -4.3752 45 1 8.8407 5.3675 -3.0469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459538705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:33 Heat of formation + Delta-G solvation = -49.357693 kcal Electronic energy + Delta-G solvation = -27566.775947 eV Core-core repulsion = 23610.716353 eV Total energy + Delta-G solvation = -3956.059593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.88069 -39.76713 -38.70448 -37.58918 -36.85114 -35.74748 -33.39916 -32.51224 -31.95764 -30.48056 -29.86792 -28.29788 -27.07862 -25.16779 -24.60839 -23.89550 -22.50794 -21.62467 -20.78762 -18.93181 -18.21773 -17.49601 -17.28857 -17.03115 -16.85335 -16.29575 -16.14704 -15.78003 -15.63710 -15.50243 -15.05008 -14.76844 -14.66304 -14.46387 -14.41099 -14.13252 -13.73156 -13.48997 -13.24806 -13.17820 -12.79490 -12.73835 -12.65212 -12.52189 -12.46717 -12.22751 -12.10646 -11.96180 -11.91497 -11.79629 -11.71360 -11.62045 -10.61649 -10.35707 -10.14507 -9.99833 -9.68354 -9.49372 -8.72675 -7.76285 -5.00682 0.12281 0.33344 1.16220 1.47257 1.51741 1.61716 2.50451 2.53930 2.64132 2.91369 3.15407 3.39011 3.66979 3.72261 3.82943 3.96800 4.28050 4.36178 4.38252 4.45943 4.48764 4.52293 4.58547 4.62945 4.68042 4.69639 4.72376 4.81986 4.83358 4.93134 4.94681 5.01754 5.11778 5.20715 5.25223 5.27318 5.32244 5.41395 5.56853 5.80714 5.81159 6.05910 6.35003 6.57843 7.08997 7.28484 7.92092 8.16295 8.36497 9.30324 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.002741 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.922414 B =10212.808556 C =11303.270809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.054 3.946 4 C 0.146 3.854 5 N -0.580 5.580 6 C -0.229 4.229 7 H 0.060 0.940 8 C -0.049 4.049 9 N -0.907 5.907 10 Si 0.950 3.050 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.306 1.306 14 C 0.166 3.834 15 C 0.535 3.465 16 O -0.576 6.576 17 N -0.732 5.732 18 C 0.194 3.806 19 H 0.066 0.934 20 C -0.141 4.141 21 C -0.082 4.082 22 C -0.102 4.102 23 C -0.106 4.106 24 C -0.046 4.046 25 Cl -0.071 7.071 26 C -0.107 4.107 27 C -0.103 4.103 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.242 0.758 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.398 0.602 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.031 0.969 42 H 0.139 0.861 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.446 16.903 -5.983 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.025 4.025 4 C 0.020 3.980 5 N -0.300 5.300 6 C -0.359 4.359 7 H 0.078 0.922 8 C -0.244 4.244 9 N -0.554 5.554 10 Si 0.781 3.219 11 H -0.205 1.205 12 H -0.215 1.215 13 H -0.235 1.235 14 C 0.036 3.964 15 C 0.322 3.678 16 O -0.454 6.454 17 N -0.387 5.387 18 C 0.089 3.911 19 H 0.085 0.915 20 C -0.199 4.199 21 C -0.082 4.082 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.073 4.073 25 Cl -0.042 7.042 26 C -0.125 4.125 27 C -0.121 4.121 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.233 0.767 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.157 0.843 43 H 0.168 0.832 44 H 0.169 0.831 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.726 16.559 -5.499 17.463 hybrid contribution -0.144 -0.996 -0.660 1.204 sum -0.870 15.562 -6.159 16.760 Atomic orbital electron populations 1.22825 0.80925 1.02833 1.00278 1.88047 1.20238 1.28835 1.95325 1.23209 0.95272 0.84282 0.99694 1.20926 0.91765 0.96840 0.88456 1.43914 1.75768 1.04139 1.06143 1.19254 1.30254 0.83298 1.03144 0.92202 1.25161 0.98268 1.00255 1.00699 1.70040 1.29328 1.36086 1.19960 0.85459 0.76434 0.82416 0.77585 1.20537 1.21525 1.23484 1.20564 0.90597 0.93566 0.91715 1.21931 0.92133 0.73970 0.79790 1.90476 1.57015 1.56528 1.41344 1.46119 1.11522 1.54118 1.26926 1.19437 0.83719 0.90220 0.97750 0.91544 1.21974 0.99285 0.98261 1.00414 1.20062 0.97557 0.94843 0.95776 1.21052 0.99177 0.97923 0.93940 1.21212 0.98596 0.91728 1.00959 1.21083 1.01542 0.89326 0.95308 1.98367 1.97656 1.35766 1.72447 1.21206 0.99265 0.98730 0.93348 1.21149 0.98638 0.91975 1.00380 0.92986 0.93964 0.89848 0.91845 0.93578 0.94166 0.92134 0.94850 0.91348 0.90493 0.76657 0.92334 0.91129 0.95007 0.84301 0.83192 0.83126 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.41 -15.38 10.44 -148.98 -1.56 -16.93 16 3 C 0.05 1.82 6.28 71.99 0.45 2.27 16 4 C 0.15 6.06 6.07 86.38 0.52 6.59 16 5 N -0.58 -28.51 1.98 -706.34 -1.40 -29.91 16 6 C -0.23 -12.81 9.43 84.03 0.79 -12.02 16 7 H 0.06 3.49 7.95 -2.91 -0.02 3.47 16 8 C -0.05 -2.73 4.84 84.86 0.41 -2.32 16 9 N -0.91 -50.88 8.91 21.65 0.19 -50.69 16 10 Si 0.95 46.44 29.62 68.60 2.03 48.47 16 11 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.31 -15.39 7.11 99.48 0.71 -14.68 16 14 C 0.17 7.34 5.45 85.63 0.47 7.81 16 15 C 0.53 24.05 5.79 87.66 0.51 24.56 16 16 O -0.58 -31.59 15.62 -3.02 -0.05 -31.63 16 17 N -0.73 -25.48 5.03 -446.10 -2.24 -27.72 16 18 C 0.19 6.13 2.77 44.25 0.12 6.25 16 19 H 0.07 2.38 7.44 -2.39 -0.02 2.36 16 20 C -0.14 -4.67 9.46 71.98 0.68 -3.99 16 21 C -0.08 -1.96 4.95 -19.86 -0.10 -2.06 16 22 C -0.10 -2.15 9.05 22.27 0.20 -1.95 16 23 C -0.11 -1.97 9.83 22.29 0.22 -1.75 16 24 C -0.05 -0.86 6.32 22.32 0.14 -0.72 16 25 Cl -0.07 -1.22 28.96 -2.72 -0.08 -1.30 16 26 C -0.11 -1.95 9.83 22.29 0.22 -1.73 16 27 C -0.10 -2.14 9.67 22.26 0.22 -1.93 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.46 8.12 -2.39 -0.02 1.45 16 33 H 0.04 1.79 7.99 -2.39 -0.02 1.77 16 34 H 0.06 2.34 8.11 -2.39 -0.02 2.32 16 35 H 0.24 13.49 8.31 -92.71 -0.77 12.72 16 36 H 0.07 2.49 8.05 -2.39 -0.02 2.47 16 37 H 0.08 3.71 6.51 -2.38 -0.02 3.70 16 38 H 0.40 11.52 6.88 -92.71 -0.64 10.89 16 39 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.14 2.70 6.93 -2.91 -0.02 2.68 16 43 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 44 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 45 H 0.14 2.63 8.04 -2.91 -0.02 2.61 16 Total: -1.00 -70.96 390.08 3.36 -67.60 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.35 Total: 21.10 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 6.10 Total: 21.01 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -3.44 Total: -108.32 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -1.60 Total: -48.57 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -70.96 3.36 -67.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459538705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.246 kcal (2) G-P(sol) polarization free energy of solvation -70.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds