Wall clock time and date at job start Sat Apr 11 2020 05:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00064 * 2 1 4 4 C 1.53003 * 109.46907 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47287 * 65.00000 * 4 3 2 6 6 C 1.36936 * 120.00300 * 267.62382 * 5 4 3 7 7 H 1.08003 * 119.99374 * 11.03182 * 6 5 4 8 8 C 1.38812 * 120.00377 * 191.04164 * 6 5 4 9 9 N 1.31615 * 119.99795 * 23.94401 * 8 6 5 10 10 Si 1.86797 * 120.00198 * 203.93965 * 8 6 5 11 11 H 1.48502 * 109.46898 * 60.00037 * 10 8 6 12 12 H 1.48496 * 109.47131 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47226 * 300.00490 * 10 8 6 14 14 C 1.46501 * 120.00189 * 87.61376 * 5 4 3 15 15 C 1.50706 * 109.46863 * 90.00056 * 14 5 4 16 16 O 1.21278 * 119.99636 * 0.02562 * 15 14 5 17 17 N 1.34777 * 119.99880 * 179.97438 * 15 14 5 18 18 C 1.46496 * 120.00018 * 180.02562 * 17 15 14 19 19 H 1.09004 * 109.47302 * 327.97134 * 18 17 15 20 20 C 1.53007 * 109.47126 * 87.96150 * 18 17 15 21 21 C 1.50696 * 109.47572 * 207.96342 * 18 17 15 22 22 C 1.38241 * 120.00324 * 331.68820 * 21 18 17 23 23 C 1.38218 * 120.00691 * 179.97438 * 22 21 18 24 24 C 1.38258 * 120.03120 * 0.02562 * 23 22 21 25 25 C 1.38188 * 120.01392 * 359.97438 * 24 23 22 26 26 C 1.38331 * 120.01004 * 151.66187 * 21 18 17 27 27 Cl 1.73606 * 120.01049 * 0.04559 * 26 21 18 28 28 H 1.09001 * 109.46720 * 300.00065 * 1 2 3 29 29 H 1.08994 * 109.47055 * 59.99956 * 1 2 3 30 30 H 1.08996 * 109.47024 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47355 * 59.99898 * 3 2 1 32 32 H 1.09000 * 109.47196 * 299.99391 * 3 2 1 33 33 H 1.08998 * 109.47256 * 305.00107 * 4 3 2 34 34 H 1.09006 * 109.47260 * 184.99530 * 4 3 2 35 35 H 0.96998 * 120.00403 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.47227 * 330.00993 * 14 5 4 37 37 H 1.09003 * 109.47569 * 210.00299 * 14 5 4 38 38 H 0.97002 * 120.00359 * 0.02562 * 17 15 14 39 39 H 1.09004 * 109.46227 * 60.00325 * 20 18 17 40 40 H 1.08999 * 109.47267 * 179.97438 * 20 18 17 41 41 H 1.08998 * 109.47227 * 300.00795 * 20 18 17 42 42 H 1.07997 * 119.99665 * 359.97438 * 22 21 18 43 43 H 1.08001 * 119.98240 * 179.97438 * 23 22 21 44 44 H 1.08008 * 119.99457 * 179.69985 * 24 23 22 45 45 H 1.07999 * 120.00888 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9768 0.5638 -1.2509 6 6 4.1447 -0.7935 -1.3201 7 1 3.7860 -1.4234 -0.5194 8 6 4.7760 -1.3596 -2.4190 9 7 5.6095 -0.6415 -3.1414 10 14 4.4428 -3.1408 -2.8726 11 1 2.9964 -3.3160 -3.1601 12 1 5.2344 -3.5016 -4.0760 13 1 4.8328 -4.0209 -1.7419 14 6 4.2382 1.3951 -2.4285 15 6 5.6819 1.8273 -2.4279 16 8 6.4198 1.4751 -1.5321 17 7 6.1532 2.6042 -3.4232 18 6 7.5568 3.0239 -3.4229 19 1 7.9019 3.1374 -2.3951 20 6 8.4055 1.9663 -4.1317 21 6 7.6879 4.3399 -4.1452 22 6 6.7922 4.6723 -5.1443 23 6 6.9120 5.8796 -5.8065 24 6 7.9279 6.7552 -5.4705 25 6 8.8238 6.4241 -4.4719 26 6 8.7041 5.2158 -3.8082 27 17 9.8296 4.7988 -2.5539 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5684 0.8427 34 1 3.9786 2.1764 0.0901 35 1 6.0505 -1.0369 -3.9095 36 1 3.5956 2.2752 -2.4019 37 1 4.0311 0.8211 -3.3318 38 1 5.5631 2.8856 -4.1398 39 1 8.0604 1.8528 -5.1594 40 1 9.4497 2.2787 -4.1319 41 1 8.3106 1.0144 -3.6093 42 1 5.9987 3.9886 -5.4075 43 1 6.2123 6.1387 -6.5873 44 1 8.0239 7.6964 -5.9917 45 1 9.6176 7.1079 -4.2098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459546917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:41 Heat of formation + Delta-G solvation = -45.869508 kcal Electronic energy + Delta-G solvation = -27939.586848 eV Core-core repulsion = 23983.678514 eV Total energy + Delta-G solvation = -3955.908334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.91825 -39.75300 -38.69950 -37.40386 -36.98711 -35.92485 -33.40235 -32.55512 -31.66729 -30.55537 -29.97626 -28.30726 -27.08356 -25.19904 -24.67581 -23.75173 -22.51041 -21.66675 -20.82187 -18.97362 -18.21547 -17.50312 -17.23645 -16.97889 -16.87398 -16.30635 -16.18272 -15.78288 -15.62955 -15.48301 -15.16669 -14.80321 -14.74516 -14.63565 -14.37660 -14.08267 -13.56496 -13.42703 -13.20872 -13.14836 -12.77605 -12.67737 -12.61758 -12.53411 -12.48585 -12.41411 -12.14692 -12.05487 -11.95903 -11.83604 -11.64542 -11.49010 -10.62506 -10.35726 -10.15473 -9.87784 -9.72560 -9.53387 -8.73739 -7.75834 -5.01676 0.19875 0.31673 1.19444 1.49971 1.50509 1.58513 2.49279 2.55612 2.67616 2.84350 3.15114 3.39941 3.60247 3.71092 3.86779 4.11895 4.30135 4.37648 4.39782 4.45068 4.47558 4.48364 4.56788 4.61688 4.67410 4.68726 4.70202 4.79635 4.81396 4.91481 4.92985 4.98746 5.09206 5.25313 5.27884 5.33003 5.34999 5.45006 5.49918 5.80400 5.89645 6.02170 6.34873 6.57915 7.07509 7.28071 7.91692 8.14738 8.35995 9.30533 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013221 B = 0.003262 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.291372 B = 8582.635811 C = 9378.239141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.055 3.945 4 C 0.146 3.854 5 N -0.581 5.581 6 C -0.231 4.231 7 H 0.061 0.939 8 C -0.050 4.050 9 N -0.910 5.910 10 Si 0.955 3.045 11 H -0.282 1.282 12 H -0.298 1.298 13 H -0.294 1.294 14 C 0.167 3.833 15 C 0.535 3.465 16 O -0.580 6.580 17 N -0.731 5.731 18 C 0.190 3.810 19 H 0.066 0.934 20 C -0.137 4.137 21 C -0.089 4.089 22 C -0.111 4.111 23 C -0.104 4.104 24 C -0.106 4.106 25 C -0.111 4.111 26 C -0.048 4.048 27 Cl -0.082 7.082 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.062 0.938 35 H 0.242 0.758 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.399 0.601 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.138 0.862 43 H 0.161 0.839 44 H 0.166 0.834 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.290 18.211 -6.918 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.024 4.024 4 C 0.020 3.980 5 N -0.300 5.300 6 C -0.361 4.361 7 H 0.079 0.921 8 C -0.244 4.244 9 N -0.558 5.558 10 Si 0.786 3.214 11 H -0.209 1.209 12 H -0.224 1.224 13 H -0.221 1.221 14 C 0.037 3.963 15 C 0.322 3.678 16 O -0.457 6.457 17 N -0.387 5.387 18 C 0.085 3.915 19 H 0.084 0.916 20 C -0.195 4.195 21 C -0.090 4.090 22 C -0.129 4.129 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.130 4.130 26 C -0.075 4.075 27 Cl -0.054 7.054 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.235 0.765 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.156 0.844 43 H 0.178 0.822 44 H 0.183 0.817 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.490 17.651 -6.235 18.727 hybrid contribution 0.072 -1.331 -0.208 1.349 sum -0.419 16.320 -6.444 17.551 Atomic orbital electron populations 1.22822 0.80934 1.02828 1.00267 1.88048 1.20237 1.28815 1.95322 1.23203 0.95169 0.84304 0.99687 1.20923 0.91886 0.96781 0.88406 1.43910 1.75689 1.03121 1.07269 1.19229 1.29845 0.82922 1.04113 0.92078 1.25196 0.98078 1.00470 1.00693 1.70002 1.28578 1.36684 1.20523 0.85522 0.77333 0.82055 0.76539 1.20903 1.22408 1.22058 1.20608 0.89871 0.93584 0.92278 1.22026 0.92347 0.73747 0.79679 1.90480 1.60350 1.54844 1.40028 1.46123 1.10123 1.54480 1.27984 1.19403 0.83509 0.90131 0.98490 0.91581 1.21910 0.99212 0.98134 1.00256 1.19861 0.95998 0.95022 0.98162 1.21130 0.98478 0.98397 0.94907 1.21609 0.98519 0.92653 0.99447 1.21534 0.93668 1.00941 0.96232 1.21319 1.01043 0.94262 0.96327 1.20979 0.94367 0.97151 0.95018 1.98372 1.60822 1.93741 1.52431 0.92971 0.93978 0.89857 0.91852 0.93526 0.94494 0.92028 0.94826 0.91275 0.90082 0.76480 0.92019 0.91811 0.94922 0.84392 0.82154 0.81696 0.83222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.41 -15.64 10.29 -148.98 -1.53 -17.18 16 3 C 0.06 1.90 6.28 71.98 0.45 2.35 16 4 C 0.15 6.21 6.08 86.38 0.53 6.74 16 5 N -0.58 -29.15 1.99 -706.30 -1.40 -30.55 16 6 C -0.23 -13.12 9.30 84.03 0.78 -12.34 16 7 H 0.06 3.60 7.94 -2.91 -0.02 3.58 16 8 C -0.05 -2.83 4.89 84.86 0.41 -2.41 16 9 N -0.91 -52.11 8.84 21.65 0.19 -51.92 16 10 Si 0.95 47.18 29.62 68.60 2.03 49.21 16 11 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 13 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 14 C 0.17 7.57 5.44 85.63 0.47 8.04 16 15 C 0.53 25.14 5.81 87.66 0.51 25.64 16 16 O -0.58 -33.29 15.62 -3.02 -0.05 -33.33 16 17 N -0.73 -27.16 4.97 -446.09 -2.22 -29.38 16 18 C 0.19 6.75 2.40 44.25 0.11 6.86 16 19 H 0.07 2.76 6.32 -2.39 -0.02 2.75 16 20 C -0.14 -5.00 9.49 71.98 0.68 -4.31 16 21 C -0.09 -2.43 5.04 -19.84 -0.10 -2.53 16 22 C -0.11 -2.34 9.22 22.27 0.21 -2.14 16 23 C -0.10 -1.57 10.05 22.27 0.22 -1.34 16 24 C -0.11 -1.47 10.04 22.26 0.22 -1.24 16 25 C -0.11 -2.03 9.83 22.29 0.22 -1.81 16 26 C -0.05 -1.22 6.31 22.32 0.14 -1.07 16 27 Cl -0.08 -2.29 27.33 -2.72 -0.07 -2.36 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 1.69 8.02 -2.39 -0.02 1.67 16 34 H 0.06 2.44 8.09 -2.38 -0.02 2.42 16 35 H 0.24 13.84 8.31 -92.71 -0.77 13.07 16 36 H 0.07 2.57 8.07 -2.38 -0.02 2.55 16 37 H 0.08 3.98 6.45 -2.39 -0.02 3.96 16 38 H 0.40 12.07 6.36 -92.71 -0.59 11.48 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.03 1.47 8.14 -2.39 -0.02 1.46 16 42 H 0.14 2.66 6.22 -2.91 -0.02 2.64 16 43 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 44 H 0.17 1.13 8.06 -2.91 -0.02 1.10 16 45 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -75.56 386.27 3.45 -72.11 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.41 Total: 20.97 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 6.10 Total: 22.44 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -3.43 Total: -111.85 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -1.58 Total: -50.51 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -0.07 Total: -2.36 kcal Total: -75.56 3.45 -72.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459546917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.241 kcal (2) G-P(sol) polarization free energy of solvation -75.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds