Wall clock time and date at job start Sat Apr 11 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.26427 * 2 1 4 4 C 1.52185 * 109.37060 * 119.68812 * 2 1 3 5 5 N 1.46363 * 111.14778 * 181.10391 * 4 2 1 6 6 S 1.65597 * 119.73302 * 116.02637 * 5 4 2 7 7 O 1.42098 * 106.40796 * 203.54157 * 6 5 4 8 8 O 1.42106 * 106.40344 * 336.46708 * 6 5 4 9 9 N 1.65607 * 107.21438 * 90.00237 * 6 5 4 10 10 C 1.46494 * 120.00132 * 270.00042 * 9 6 5 11 11 C 1.46507 * 119.99822 * 89.99989 * 9 6 5 12 12 C 1.50699 * 109.46745 * 95.00123 * 11 9 6 13 13 H 1.08000 * 120.00244 * 359.97438 * 12 11 9 14 14 C 1.37875 * 119.99742 * 179.97438 * 12 11 9 15 15 N 1.31523 * 120.00007 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00186 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47182 * 89.99827 * 16 14 12 18 18 H 1.48495 * 109.47520 * 210.00130 * 16 14 12 19 19 H 1.48507 * 109.46838 * 330.00111 * 16 14 12 20 20 C 1.46622 * 120.53520 * 296.05865 * 5 4 2 21 21 C 1.51697 * 108.76671 * 80.69008 * 20 5 4 22 22 C 1.37592 * 120.91632 * 115.48037 * 21 20 5 23 23 C 1.38461 * 119.66206 * 178.20183 * 22 21 20 24 24 C 1.38294 * 119.90431 * 359.76457 * 23 22 21 25 25 C 1.38094 * 120.39803 * 0.89753 * 24 23 22 26 26 C 1.38745 * 118.19420 * 295.15665 * 21 20 5 27 27 O 1.35423 * 120.66476 * 4.42998 * 26 21 20 28 28 H 1.09003 * 109.46864 * 300.31231 * 1 2 3 29 29 H 1.08996 * 109.47302 * 60.31064 * 1 2 3 30 30 H 1.09000 * 109.47015 * 180.31070 * 1 2 3 31 31 H 1.09002 * 109.13505 * 60.69156 * 4 2 1 32 32 H 1.08998 * 109.13392 * 301.51246 * 4 2 1 33 33 H 1.09000 * 109.47295 * 89.99870 * 10 9 6 34 34 H 1.09004 * 109.47505 * 210.00081 * 10 9 6 35 35 H 1.09002 * 109.47211 * 330.00059 * 10 9 6 36 36 H 1.08992 * 109.46556 * 214.99835 * 11 9 6 37 37 H 1.09001 * 109.46853 * 335.00373 * 11 9 6 38 38 H 0.96995 * 119.99563 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.58909 * 200.47780 * 20 5 4 40 40 H 1.09002 * 109.58815 * 320.75530 * 20 5 4 41 41 H 1.08001 * 120.17015 * 358.17473 * 22 21 20 42 42 H 1.08000 * 120.04595 * 179.77905 * 23 22 21 43 43 H 1.07993 * 119.79723 * 180.92578 * 24 23 22 44 44 H 1.07999 * 120.03525 * 180.14834 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8896 1.0290 0.0000 4 6 2.0348 -0.7111 1.2472 5 7 3.4974 -0.7107 1.2998 6 16 4.2752 0.0915 2.5219 7 8 5.5775 0.3924 2.0396 8 8 3.3713 1.0832 2.9899 9 7 4.4741 -0.9840 3.7654 10 6 3.4423 -1.1091 4.7978 11 6 5.6819 -1.8104 3.8330 12 6 6.6975 -1.1436 4.7246 13 1 6.4665 -0.1986 5.1937 14 6 7.9215 -1.7400 4.9416 15 7 8.8081 -1.1578 5.7193 16 14 8.3212 -3.3742 4.1298 17 1 8.9536 -3.1291 2.8087 18 1 9.2570 -4.1396 4.9921 19 1 7.0707 -4.1531 3.9431 20 6 4.2797 -1.4144 0.2786 21 6 4.3717 -0.5376 -0.9559 22 6 5.5828 -0.0450 -1.3844 23 6 5.6419 0.7220 -2.5357 24 6 4.4869 0.9841 -3.2496 25 6 3.2697 0.5008 -2.8114 26 6 3.2021 -0.2513 -1.6452 27 8 2.0030 -0.6689 -1.1743 28 1 -0.3633 0.5187 0.8872 29 1 -0.3634 0.5090 -0.8927 30 1 -0.3633 -1.0277 0.0056 31 1 1.6777 -1.7409 1.2406 32 1 1.6455 -0.2038 2.1299 33 1 2.7193 -1.8680 4.4989 34 1 3.9052 -1.3996 5.7410 35 1 2.9345 -0.1525 4.9218 36 1 5.4295 -2.7900 4.2389 37 1 6.0982 -1.9278 2.8325 38 1 9.6690 -1.5776 5.8722 39 1 5.2810 -1.6155 0.6595 40 1 3.7893 -2.3546 0.0261 41 1 6.4827 -0.2552 -0.8255 42 1 6.5888 1.1147 -2.8758 43 1 4.5371 1.5700 -4.1554 44 1 2.3717 0.7071 -3.3747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490528210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:06 Heat of formation + Delta-G solvation = -70.541921 kcal Electronic energy + Delta-G solvation = -29278.995998 eV Core-core repulsion = 25324.061494 eV Total energy + Delta-G solvation = -3954.934504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -40.57514 -37.82686 -36.80331 -35.99832 -35.68254 -35.26076 -33.06449 -32.42145 -31.16344 -29.45743 -28.44591 -27.07319 -25.31467 -24.93262 -22.78967 -21.96293 -21.69911 -21.14599 -18.89890 -18.10264 -17.42419 -16.97601 -16.74256 -16.39421 -16.00870 -15.58470 -15.16282 -15.03000 -14.44947 -14.26133 -14.03705 -13.74540 -13.59491 -13.24311 -13.01352 -12.71214 -12.63038 -12.54711 -12.41993 -12.33815 -12.13807 -11.87204 -11.79022 -11.77804 -11.40888 -11.38618 -11.28330 -11.14282 -10.92793 -10.71685 -10.50755 -10.28016 -10.12209 -9.59507 -9.13752 -8.92118 -8.63005 -8.56297 -8.16310 -6.11727 -4.11548 0.89778 1.15684 1.33350 3.18828 3.24119 3.28846 3.30652 3.36404 3.83482 4.01080 4.34552 4.52736 4.70588 4.72584 4.77642 4.84823 4.94165 4.98584 5.07764 5.17744 5.21193 5.30240 5.36648 5.46156 5.49630 5.54470 5.64705 5.69515 5.72325 5.85110 5.87759 5.91408 6.03796 6.16784 6.27676 6.37352 6.43931 6.53045 6.54229 6.67885 6.69614 7.02233 7.32389 7.44368 7.53325 8.45030 8.92840 9.46871 11.01801 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.004572 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.233833 B = 6122.125036 C = 7257.812865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.077 3.923 3 H 0.069 0.931 4 C 0.097 3.903 5 N -1.008 6.008 6 S 2.775 3.225 7 O -0.952 6.952 8 O -0.990 6.990 9 N -0.990 5.990 10 C 0.093 3.907 11 C 0.228 3.772 12 C -0.533 4.533 13 H 0.077 0.923 14 C 0.074 3.926 15 N -0.894 5.894 16 Si 0.871 3.129 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.265 1.265 20 C 0.166 3.834 21 C -0.135 4.135 22 C -0.079 4.079 23 C -0.130 4.130 24 C -0.106 4.106 25 C -0.142 4.142 26 C 0.108 3.892 27 O -0.322 6.322 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.137 0.863 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.219 -0.549 -15.047 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.020 3.980 3 H 0.087 0.913 4 C -0.029 4.029 5 N -0.844 5.844 6 S 2.784 3.216 7 O -0.936 6.936 8 O -0.974 6.974 9 N -0.832 5.832 10 C -0.053 4.053 11 C 0.105 3.895 12 C -0.572 4.572 13 H 0.095 0.905 14 C -0.129 4.129 15 N -0.532 5.532 16 Si 0.697 3.303 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.189 1.189 20 C 0.041 3.959 21 C -0.138 4.138 22 C -0.098 4.098 23 C -0.148 4.148 24 C -0.124 4.124 25 C -0.160 4.160 26 C 0.064 3.936 27 O -0.239 6.239 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.155 0.845 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.885 0.163 -15.002 21.134 hybrid contribution 0.441 -1.108 -0.245 1.217 sum -14.444 -0.945 -15.247 21.024 Atomic orbital electron populations 1.21826 0.92069 1.03417 1.03139 1.22629 0.95187 0.96036 0.84192 0.91259 1.21668 0.79977 1.02372 0.98925 1.58315 1.13889 1.70707 1.41465 1.02280 0.73108 0.73543 0.72641 1.93629 1.37586 1.82285 1.80079 1.93520 1.66745 1.56276 1.80867 1.57456 1.28254 1.59574 1.37890 1.21396 0.89969 1.00945 0.92989 1.19446 0.81651 0.91017 0.97432 1.21356 0.98364 1.08641 1.28817 0.90459 1.24867 0.95866 0.97421 0.94728 1.69898 1.06952 1.39055 1.37286 0.86941 0.78954 0.84263 0.80107 1.19714 1.20889 1.18929 1.20358 0.96748 0.93785 0.85052 1.20828 0.93508 1.01115 0.98319 1.21064 0.97438 0.95618 0.95653 1.21267 0.98613 0.99298 0.95591 1.21013 0.92076 0.99547 0.99791 1.21252 0.98685 0.98058 0.98022 1.18501 0.84844 0.96125 0.94134 1.86042 1.32874 1.60830 1.44142 0.90258 0.91436 0.91278 0.90303 0.88102 0.94125 0.90019 0.91343 0.94837 0.95545 0.92474 0.88427 0.89175 0.84480 0.85515 0.85747 0.85587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.54 37.16 0.35 -0.86 16 2 C 0.08 0.90 3.12 -27.15 -0.08 0.81 16 3 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 4 C 0.10 1.19 5.47 -4.53 -0.02 1.16 16 5 N -1.01 -15.40 3.05 -115.59 -0.35 -15.75 16 6 S 2.78 54.36 5.99 -107.50 -0.64 53.72 16 7 O -0.95 -21.96 15.97 -57.17 -0.91 -22.88 16 8 O -0.99 -20.22 15.32 -57.17 -0.88 -21.09 16 9 N -0.99 -19.81 3.23 -123.05 -0.40 -20.21 16 10 C 0.09 1.54 10.68 59.84 0.64 2.17 16 11 C 0.23 5.25 4.15 -5.19 -0.02 5.23 16 12 C -0.53 -15.00 9.94 -34.44 -0.34 -15.34 16 13 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 14 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 15 N -0.89 -27.22 13.96 55.43 0.77 -26.45 16 16 Si 0.87 20.66 27.47 -169.99 -4.67 15.99 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 20 C 0.17 2.41 5.53 -4.64 -0.03 2.38 16 21 C -0.14 -1.97 5.50 -104.18 -0.57 -2.54 16 22 C -0.08 -1.11 9.72 -39.73 -0.39 -1.50 16 23 C -0.13 -1.54 10.06 -39.48 -0.40 -1.94 16 24 C -0.11 -1.15 10.02 -39.61 -0.40 -1.55 16 25 C -0.14 -1.67 10.00 -39.38 -0.39 -2.07 16 26 C 0.11 1.47 5.59 -39.14 -0.22 1.26 16 27 O -0.32 -4.17 9.53 -17.96 -0.17 -4.34 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.18 6.94 -51.93 -0.36 0.82 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 35 H 0.07 1.08 7.02 -51.93 -0.36 0.71 16 36 H 0.03 0.74 7.17 -51.93 -0.37 0.36 16 37 H 0.03 0.60 6.82 -51.93 -0.35 0.25 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.10 1.48 7.05 -51.93 -0.37 1.12 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.14 1.95 8.01 -52.49 -0.42 1.52 16 42 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 44 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 368.39 15.07 5.55 5.55 Total: -1.00 -34.61 368.39 -10.13 -44.73 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.46 Total: 1.47 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -1.97 Total: -10.75 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.02 Total: -62.41 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -1.96 Total: -48.31 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Atomic # 16 Polarization: 54.36 SS G_CDS: -0.64 Total: 53.72 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.61 -10.13 -44.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490528210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.808 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds