Wall clock time and date at job start Sat Apr 11 2020 05:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46779 * 2 1 4 4 N 1.46900 * 109.46869 * 240.00232 * 2 1 3 5 5 C 1.53001 * 109.47335 * 120.00216 * 2 1 3 6 6 H 1.08997 * 109.51075 * 59.89995 * 5 2 1 7 7 C 1.53296 * 109.51204 * 180.02562 * 5 2 1 8 8 N 1.47147 * 108.38563 * 172.27819 * 7 5 2 9 9 S 1.65593 * 120.98584 * 129.44331 * 8 7 5 10 10 O 1.42108 * 106.40088 * 343.59614 * 9 8 7 11 11 O 1.42097 * 106.40232 * 210.68019 * 9 8 7 12 12 C 1.76195 * 107.22141 * 97.13871 * 9 8 7 13 13 C 1.37637 * 120.13132 * 115.87023 * 12 9 8 14 14 C 1.38610 * 120.25076 * 180.02562 * 13 12 9 15 15 C 1.38657 * 120.50023 * 0.02562 * 14 13 12 16 16 C 1.37597 * 120.25035 * 359.97438 * 15 14 13 17 17 C 1.40701 * 120.12592 * 295.89094 * 12 9 8 18 18 C 1.41392 * 120.24328 * 359.95645 * 17 12 9 19 19 H 1.07999 * 120.00196 * 330.07270 * 18 17 12 20 20 C 1.39949 * 119.99907 * 150.06952 * 18 17 12 21 21 N 1.30825 * 120.00090 * 349.03168 * 20 18 17 22 22 Si 1.86798 * 120.00218 * 169.03397 * 20 18 17 23 23 H 1.48502 * 109.47320 * 89.99881 * 22 20 18 24 24 H 1.48497 * 109.47508 * 210.00120 * 22 20 18 25 25 H 1.48501 * 109.47149 * 329.99859 * 22 20 18 26 26 C 1.47153 * 118.03187 * 309.71509 * 8 7 5 27 27 C 1.52877 * 108.61326 * 50.22702 * 26 8 7 28 28 O 1.42964 * 109.55155 * 299.76709 * 5 2 1 29 29 H 1.09000 * 109.46795 * 299.99634 * 1 2 3 30 30 H 1.08996 * 109.47835 * 59.99730 * 1 2 3 31 31 H 1.09007 * 109.47027 * 180.02562 * 1 2 3 32 32 H 1.00902 * 111.00477 * 299.99792 * 4 2 1 33 33 H 1.00906 * 111.00085 * 63.95224 * 4 2 1 34 34 H 1.08996 * 109.68309 * 52.54893 * 7 5 2 35 35 H 1.09008 * 109.70974 * 292.01742 * 7 5 2 36 36 H 1.07995 * 119.87305 * 0.02883 * 13 12 9 37 37 H 1.08001 * 119.75065 * 180.02562 * 14 13 12 38 38 H 1.07997 * 119.87659 * 180.27713 * 15 14 13 39 39 H 1.08003 * 120.12668 * 180.02562 * 16 15 14 40 40 H 0.97001 * 120.00401 * 179.97438 * 21 20 18 41 41 H 1.09006 * 109.68171 * 170.01171 * 26 8 7 42 42 H 1.09004 * 109.68356 * 290.56166 * 26 8 7 43 43 H 1.08994 * 109.58931 * 187.92427 * 27 26 8 44 44 H 1.09000 * 109.40752 * 67.83757 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 1 1.6756 -1.7485 1.2507 7 6 3.5730 -0.7212 1.2504 8 7 4.0361 -1.2508 2.5428 9 16 5.1608 -2.4641 2.6132 10 8 5.2046 -3.0464 1.3177 11 8 4.8759 -3.2076 3.7902 12 6 6.7303 -1.7062 2.8714 13 6 7.4308 -1.9457 4.0317 14 6 8.6655 -1.3504 4.2375 15 6 9.2089 -0.5076 3.2798 16 6 8.5263 -0.2538 2.1123 17 6 7.2722 -0.8533 1.8923 18 6 6.5619 -0.6002 0.6962 19 1 5.9015 -1.3525 0.2908 20 6 6.7146 0.6252 0.0377 21 7 7.3377 1.6122 0.6285 22 14 6.0284 0.8518 -1.6849 23 1 4.6334 1.3538 -1.6001 24 1 6.8630 1.8318 -2.4253 25 1 6.0434 -0.4503 -2.3989 26 6 3.4656 -0.6745 3.7708 27 6 1.9419 -0.6731 3.6470 28 8 1.5689 -0.0456 2.4177 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6961 -1.6479 -1.2229 33 1 1.7501 -0.1989 -2.0373 34 1 3.9402 0.2964 1.1178 35 1 3.9413 -1.3526 0.4417 36 1 7.0170 -2.6001 4.7845 37 1 9.2084 -1.5443 5.1508 38 1 10.1736 -0.0526 3.4487 39 1 8.9516 0.4026 1.3675 40 1 7.4439 2.4614 0.1720 41 1 3.7624 -1.2753 4.6305 42 1 3.8218 0.3480 3.8963 43 1 1.5079 -0.1239 4.4824 44 1 1.5767 -1.7001 3.6574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601337907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:58 Heat of formation + Delta-G solvation = -98.156123 kcal Electronic energy + Delta-G solvation = -29816.456564 eV Core-core repulsion = 25860.324618 eV Total energy + Delta-G solvation = -3956.131946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.30152 -37.57158 -36.40582 -35.84796 -34.91848 -34.35874 -33.80028 -30.62761 -30.19614 -29.53608 -28.59190 -26.68250 -25.53447 -23.94703 -21.75143 -21.45131 -21.10335 -20.47476 -18.14619 -17.61053 -17.25724 -16.77799 -16.07662 -15.75345 -15.37129 -15.18989 -14.71408 -14.46825 -14.32875 -14.11935 -13.85588 -13.60878 -13.27648 -13.13896 -13.00159 -12.76406 -12.70600 -12.01823 -11.92197 -11.65146 -11.40657 -11.37537 -11.34263 -11.18085 -11.15847 -11.10311 -10.87583 -10.79333 -10.55842 -10.51433 -10.12592 -9.86276 -9.81286 -9.39462 -9.18322 -8.66293 -8.25078 -7.98337 -7.57075 -7.00751 -4.75126 1.46769 2.36151 2.76747 3.03040 3.12973 3.17958 3.68627 3.81385 3.85793 4.42195 4.65863 4.76571 4.89335 5.04316 5.16553 5.18456 5.30008 5.35071 5.39461 5.52131 5.57439 5.66648 5.72785 5.82474 5.98738 6.02127 6.05124 6.11820 6.17952 6.24560 6.40832 6.60672 6.64917 6.81517 6.97770 7.05425 7.13948 7.20864 7.34138 7.36350 7.48540 7.52869 7.71516 7.82348 7.96590 8.37890 8.55410 8.67847 9.91855 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010844 B = 0.006660 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.387667 B = 4203.351905 C = 5843.641338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.097 3.903 3 H 0.091 0.909 4 N -0.838 5.838 5 C 0.085 3.915 6 H 0.056 0.944 7 C 0.111 3.889 8 N -0.996 5.996 9 S 2.704 3.296 10 O -0.971 6.971 11 O -0.997 6.997 12 C -0.777 4.777 13 C -0.004 4.004 14 C -0.249 4.249 15 C -0.078 4.078 16 C -0.156 4.156 17 C 0.192 3.808 18 C -0.470 4.470 19 H 0.113 0.887 20 C 0.082 3.918 21 N -0.780 5.780 22 Si 0.907 3.093 23 H -0.253 1.253 24 H -0.280 1.280 25 H -0.252 1.252 26 C 0.089 3.911 27 C 0.056 3.944 28 O -0.378 6.378 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.342 0.658 33 H 0.346 0.654 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.286 0.714 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.470 0.905 -0.748 10.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.016 4.016 3 H 0.109 0.891 4 N -0.369 5.369 5 C 0.025 3.975 6 H 0.074 0.926 7 C -0.014 4.014 8 N -0.832 5.832 9 S 2.804 3.196 10 O -0.961 6.961 11 O -0.988 6.988 12 C -0.872 4.872 13 C -0.024 4.024 14 C -0.269 4.269 15 C -0.097 4.097 16 C -0.175 4.175 17 C 0.187 3.813 18 C -0.498 4.498 19 H 0.131 0.869 20 C -0.139 4.139 21 N -0.403 5.403 22 Si 0.730 3.270 23 H -0.177 1.177 24 H -0.205 1.205 25 H -0.175 1.175 26 C -0.037 4.037 27 C -0.022 4.022 28 O -0.296 6.296 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.096 0.904 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.141 0.859 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.119 0.881 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.991 0.555 -0.573 10.023 hybrid contribution -0.380 0.659 -0.649 1.000 sum -10.372 1.215 -1.222 10.514 Atomic orbital electron populations 1.22544 0.97215 1.01812 1.02394 1.21244 0.92367 0.98951 0.89001 0.89105 1.58643 1.67745 1.06597 1.03919 1.22412 0.94698 0.95165 0.85221 0.92580 1.22062 0.92291 1.02145 0.84932 1.57708 1.57604 1.56837 1.11047 1.00992 0.73564 0.72551 0.72533 1.93473 1.87252 1.75261 1.40135 1.93426 1.85459 1.69460 1.50470 1.29829 1.22937 1.29064 1.05400 1.20223 0.93919 0.94646 0.93642 1.20483 0.98874 1.06831 1.00755 1.20902 0.97809 0.96417 0.94582 1.21516 0.95262 1.03115 0.97644 1.17024 0.89949 0.85088 0.89263 1.20458 1.23259 1.00633 1.05418 0.86934 1.26000 0.93097 0.95064 0.99740 1.69801 1.30303 1.02824 1.37393 0.86271 0.80130 0.79864 0.80743 1.17681 1.20505 1.17530 1.21868 0.94076 1.00452 0.87351 1.22802 0.94482 0.98053 0.86864 1.87819 1.75845 1.52500 1.13465 0.91208 0.92909 0.92947 0.84525 0.84042 0.90351 0.86765 0.87579 0.88760 0.88869 0.85889 0.90335 0.88744 0.90806 0.88067 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.34 37.16 0.35 -1.54 16 2 C 0.10 1.24 3.15 -67.71 -0.21 1.03 16 3 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 4 N -0.84 -10.15 8.64 -4.67 -0.04 -10.19 16 5 C 0.08 1.29 2.51 -26.58 -0.07 1.22 16 6 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 7 C 0.11 2.05 4.06 -3.54 -0.01 2.04 16 8 N -1.00 -19.18 3.29 -113.30 -0.37 -19.55 16 9 S 2.70 60.39 5.11 -107.50 -0.55 59.84 16 10 O -0.97 -23.53 14.39 -57.17 -0.82 -24.35 16 11 O -1.00 -22.75 15.79 -57.17 -0.90 -23.65 16 12 C -0.78 -18.90 5.96 -38.87 -0.23 -19.13 16 13 C 0.00 -0.10 9.53 -39.66 -0.38 -0.48 16 14 C -0.25 -5.53 10.05 -39.29 -0.39 -5.93 16 15 C -0.08 -1.78 10.02 -39.66 -0.40 -2.18 16 16 C -0.16 -3.89 8.65 -38.87 -0.34 -4.22 16 17 C 0.19 4.91 5.53 -106.82 -0.59 4.32 16 18 C -0.47 -11.67 6.68 -37.74 -0.25 -11.92 16 19 H 0.11 2.82 4.05 -52.49 -0.21 2.60 16 20 C 0.08 1.91 5.24 -17.34 -0.09 1.82 16 21 N -0.78 -18.53 10.93 55.55 0.61 -17.92 16 22 Si 0.91 17.84 29.57 -169.99 -5.03 12.82 16 23 H -0.25 -4.71 7.11 56.52 0.40 -4.31 16 24 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.25 -5.08 7.11 56.52 0.40 -4.67 16 26 C 0.09 1.44 6.66 -3.75 -0.02 1.42 16 27 C 0.06 0.77 6.97 37.09 0.26 1.02 16 28 O -0.38 -5.64 9.73 -35.23 -0.34 -5.99 16 29 H 0.07 0.77 7.69 -51.93 -0.40 0.37 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.34 3.67 9.00 -39.29 -0.35 3.31 16 33 H 0.35 3.44 9.07 -39.29 -0.36 3.08 16 34 H 0.08 1.55 7.98 -51.93 -0.41 1.14 16 35 H 0.11 2.27 5.44 -51.92 -0.28 1.99 16 36 H 0.11 2.26 7.33 -52.49 -0.38 1.87 16 37 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.12 3.10 6.32 -52.48 -0.33 2.76 16 40 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 41 H 0.09 1.47 7.12 -51.93 -0.37 1.10 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -29.66 358.53 -10.48 -40.14 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -6.04 Total: 15.99 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: -2.39 Total: -32.53 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.19 Total: -47.67 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -2.07 Total: -53.99 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 16 Polarization: 60.39 SS G_CDS: -0.55 Total: 59.84 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.66 -10.48 -40.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.019 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds