Wall clock time and date at job start Sat Apr 11 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46779 * 2 1 4 4 N 1.46900 * 109.46869 * 240.00232 * 2 1 3 5 5 C 1.53001 * 109.47335 * 120.00216 * 2 1 3 6 6 H 1.08997 * 109.51075 * 59.89995 * 5 2 1 7 7 C 1.53296 * 109.51204 * 180.02562 * 5 2 1 8 8 N 1.47147 * 108.38563 * 172.27819 * 7 5 2 9 9 S 1.65593 * 120.98584 * 129.44331 * 8 7 5 10 10 O 1.42108 * 106.40088 * 343.59614 * 9 8 7 11 11 O 1.42097 * 106.40232 * 210.68019 * 9 8 7 12 12 C 1.76195 * 107.22141 * 97.13871 * 9 8 7 13 13 C 1.37637 * 120.13132 * 115.87023 * 12 9 8 14 14 C 1.38610 * 120.25076 * 180.02562 * 13 12 9 15 15 C 1.38657 * 120.50023 * 0.02562 * 14 13 12 16 16 C 1.37597 * 120.25035 * 359.97438 * 15 14 13 17 17 C 1.40701 * 120.12592 * 295.89094 * 12 9 8 18 18 C 1.41392 * 120.24328 * 359.95645 * 17 12 9 19 19 H 1.07999 * 120.00196 * 330.07270 * 18 17 12 20 20 C 1.39949 * 119.99907 * 150.06952 * 18 17 12 21 21 N 1.30825 * 120.00090 * 349.03168 * 20 18 17 22 22 Si 1.86798 * 120.00218 * 169.03397 * 20 18 17 23 23 H 1.48502 * 109.47320 * 89.99881 * 22 20 18 24 24 H 1.48497 * 109.47508 * 210.00120 * 22 20 18 25 25 H 1.48501 * 109.47149 * 329.99859 * 22 20 18 26 26 C 1.47153 * 118.03187 * 309.71509 * 8 7 5 27 27 C 1.52877 * 108.61326 * 50.22702 * 26 8 7 28 28 O 1.42964 * 109.55155 * 299.76709 * 5 2 1 29 29 H 1.09000 * 109.46795 * 299.99634 * 1 2 3 30 30 H 1.08996 * 109.47835 * 59.99730 * 1 2 3 31 31 H 1.09007 * 109.47027 * 180.02562 * 1 2 3 32 32 H 1.00902 * 111.00477 * 299.99792 * 4 2 1 33 33 H 1.00906 * 111.00085 * 63.95224 * 4 2 1 34 34 H 1.08996 * 109.68309 * 52.54893 * 7 5 2 35 35 H 1.09008 * 109.70974 * 292.01742 * 7 5 2 36 36 H 1.07995 * 119.87305 * 0.02883 * 13 12 9 37 37 H 1.08001 * 119.75065 * 180.02562 * 14 13 12 38 38 H 1.07997 * 119.87659 * 180.27713 * 15 14 13 39 39 H 1.08003 * 120.12668 * 180.02562 * 16 15 14 40 40 H 0.97001 * 120.00401 * 179.97438 * 21 20 18 41 41 H 1.09006 * 109.68171 * 170.01171 * 26 8 7 42 42 H 1.09004 * 109.68356 * 290.56166 * 26 8 7 43 43 H 1.08994 * 109.58931 * 187.92427 * 27 26 8 44 44 H 1.09000 * 109.40752 * 67.83757 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 1 1.6756 -1.7485 1.2507 7 6 3.5730 -0.7212 1.2504 8 7 4.0361 -1.2508 2.5428 9 16 5.1608 -2.4641 2.6132 10 8 5.2046 -3.0464 1.3177 11 8 4.8759 -3.2076 3.7902 12 6 6.7303 -1.7062 2.8714 13 6 7.4308 -1.9457 4.0317 14 6 8.6655 -1.3504 4.2375 15 6 9.2089 -0.5076 3.2798 16 6 8.5263 -0.2538 2.1123 17 6 7.2722 -0.8533 1.8923 18 6 6.5619 -0.6002 0.6962 19 1 5.9015 -1.3525 0.2908 20 6 6.7146 0.6252 0.0377 21 7 7.3377 1.6122 0.6285 22 14 6.0284 0.8518 -1.6849 23 1 4.6334 1.3538 -1.6001 24 1 6.8630 1.8318 -2.4253 25 1 6.0434 -0.4503 -2.3989 26 6 3.4656 -0.6745 3.7708 27 6 1.9419 -0.6731 3.6470 28 8 1.5689 -0.0456 2.4177 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6961 -1.6479 -1.2229 33 1 1.7501 -0.1989 -2.0373 34 1 3.9402 0.2964 1.1178 35 1 3.9413 -1.3526 0.4417 36 1 7.0170 -2.6001 4.7845 37 1 9.2084 -1.5443 5.1508 38 1 10.1736 -0.0526 3.4487 39 1 8.9516 0.4026 1.3675 40 1 7.4439 2.4614 0.1720 41 1 3.7624 -1.2753 4.6305 42 1 3.8218 0.3480 3.8963 43 1 1.5079 -0.1239 4.4824 44 1 1.5767 -1.7001 3.6574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601337907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:56 Heat of formation + Delta-G solvation = -119.747719 kcal Electronic energy + Delta-G solvation = -29817.392846 eV Core-core repulsion = 25860.324618 eV Total energy + Delta-G solvation = -3957.068227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.52032 -39.38192 -38.20183 -36.90955 -36.74649 -35.83870 -35.49044 -32.03689 -31.81688 -31.35807 -29.50843 -27.98347 -27.34069 -25.18710 -23.46682 -22.98275 -22.71239 -21.61242 -19.81792 -19.39790 -18.85607 -17.97789 -17.73563 -17.24751 -17.00203 -16.59570 -16.05937 -15.91115 -15.71157 -15.52774 -15.22869 -14.99238 -14.93144 -14.67497 -14.43858 -13.99877 -13.76690 -13.72979 -13.47666 -13.15112 -13.09551 -13.00939 -12.93282 -12.81820 -12.69490 -12.44010 -12.36927 -12.33457 -12.14891 -11.89768 -11.65226 -11.32514 -11.23571 -11.13134 -10.91854 -9.88907 -9.69423 -9.51325 -9.42196 -8.77799 -6.61294 -0.25438 0.52824 0.97789 1.41156 1.52325 1.57082 2.15597 2.21991 2.62629 2.64650 2.94881 3.46428 3.52489 3.81882 3.84146 3.94808 3.99301 4.12811 4.20643 4.29839 4.33686 4.45907 4.48502 4.54248 4.55225 4.70750 4.73249 4.90886 4.91835 4.97797 5.04177 5.15487 5.18826 5.24132 5.28339 5.30026 5.53726 5.64949 5.74003 5.86540 5.99251 6.13365 6.17074 6.28539 6.52093 6.67044 6.72133 6.83516 8.17476 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010844 B = 0.006660 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.387667 B = 4203.351905 C = 5843.641338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 H 0.078 0.922 4 N -0.852 5.852 5 C 0.089 3.911 6 H 0.062 0.938 7 C 0.113 3.887 8 N -0.994 5.994 9 S 2.717 3.283 10 O -0.995 6.995 11 O -1.004 7.004 12 C -0.798 4.798 13 C -0.018 4.018 14 C -0.251 4.251 15 C -0.077 4.077 16 C -0.184 4.184 17 C 0.165 3.835 18 C -0.488 4.488 19 H 0.104 0.896 20 C 0.054 3.946 21 N -0.802 5.802 22 Si 0.959 3.041 23 H -0.236 1.236 24 H -0.270 1.270 25 H -0.262 1.262 26 C 0.079 3.921 27 C 0.057 3.943 28 O -0.380 6.380 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.349 0.651 33 H 0.359 0.641 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.294 0.706 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.138 0.862 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.985 1.380 -0.479 12.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 H 0.097 0.903 4 N -0.386 5.386 5 C 0.029 3.971 6 H 0.080 0.920 7 C -0.012 4.012 8 N -0.833 5.833 9 S 2.816 3.184 10 O -0.986 6.986 11 O -0.995 6.995 12 C -0.892 4.892 13 C -0.038 4.038 14 C -0.271 4.271 15 C -0.096 4.096 16 C -0.204 4.204 17 C 0.160 3.840 18 C -0.516 4.516 19 H 0.122 0.878 20 C -0.165 4.165 21 N -0.426 5.426 22 Si 0.778 3.222 23 H -0.159 1.159 24 H -0.194 1.194 25 H -0.185 1.185 26 C -0.047 4.047 27 C -0.021 4.021 28 O -0.298 6.298 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.163 0.837 33 H 0.174 0.826 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.089 0.911 43 H 0.155 0.845 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.489 1.038 -0.286 11.540 hybrid contribution 0.150 0.499 -0.630 0.818 sum -11.339 1.537 -0.916 11.479 Atomic orbital electron populations 1.22426 0.94940 1.02507 1.02976 1.21167 0.94021 0.97866 0.88182 0.90340 1.58610 1.68330 1.07316 1.04310 1.22418 0.92027 0.96084 0.86553 0.91963 1.22033 0.94794 1.00318 0.84049 1.57522 1.56684 1.56518 1.12527 1.00473 0.73299 0.72805 0.71779 1.93430 1.87572 1.76312 1.41277 1.93402 1.85485 1.70046 1.50536 1.30214 1.24456 1.28889 1.05659 1.20563 0.94468 0.95020 0.93712 1.20891 0.98607 1.05839 1.01719 1.21250 0.98713 0.95909 0.93719 1.21566 0.95802 1.04304 0.98757 1.17343 0.90586 0.85980 0.90090 1.20496 1.23807 1.01258 1.06005 0.87820 1.26628 0.93078 0.94308 1.02535 1.69819 1.30756 1.03332 1.38677 0.85516 0.80585 0.79442 0.76613 1.15870 1.19444 1.18542 1.22178 0.96147 1.00120 0.86213 1.22989 0.92296 0.99331 0.87460 1.87830 1.75441 1.52781 1.13724 0.91715 0.91206 0.92171 0.83676 0.82614 0.92300 0.88505 0.86050 0.85428 0.85975 0.86947 0.89498 0.88217 0.91089 0.84478 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.34 71.98 0.67 -2.44 16 2 C 0.10 2.42 3.15 44.91 0.14 2.56 16 3 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 4 N -0.85 -19.52 8.64 -168.68 -1.46 -20.97 16 5 C 0.09 2.61 2.51 30.69 0.08 2.69 16 6 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 7 C 0.11 4.23 4.06 86.35 0.35 4.58 16 8 N -0.99 -38.44 3.29 -512.36 -1.68 -40.12 16 9 S 2.72 122.98 5.11 -56.49 -0.29 122.69 16 10 O -1.00 -49.53 14.39 -128.00 -1.84 -51.37 16 11 O -1.00 -45.57 15.79 -128.00 -2.02 -47.59 16 12 C -0.80 -39.46 5.96 22.73 0.14 -39.32 16 13 C -0.02 -0.82 9.53 22.22 0.21 -0.61 16 14 C -0.25 -10.79 10.05 22.46 0.23 -10.57 16 15 C -0.08 -3.47 10.02 22.22 0.22 -3.24 16 16 C -0.18 -9.39 8.65 22.73 0.20 -9.20 16 17 C 0.16 8.66 5.53 -21.29 -0.12 8.54 16 18 C -0.49 -25.00 6.68 23.46 0.16 -24.84 16 19 H 0.10 5.40 4.05 -2.91 -0.01 5.39 16 20 C 0.05 2.54 5.24 85.26 0.45 2.99 16 21 N -0.80 -38.75 10.93 21.83 0.24 -38.51 16 22 Si 0.96 36.72 29.57 68.60 2.03 38.74 16 23 H -0.24 -8.29 7.11 99.48 0.71 -7.59 16 24 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 25 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 26 C 0.08 2.49 6.66 86.21 0.57 3.06 16 27 C 0.06 1.43 6.97 71.94 0.50 1.93 16 28 O -0.38 -10.62 9.73 -148.98 -1.45 -12.07 16 29 H 0.06 1.27 7.69 -2.39 -0.02 1.25 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.35 7.02 9.00 -89.69 -0.81 6.21 16 33 H 0.36 6.48 9.07 -89.69 -0.81 5.66 16 34 H 0.06 2.39 7.98 -2.39 -0.02 2.37 16 35 H 0.10 3.95 5.44 -2.38 -0.01 3.93 16 36 H 0.12 5.07 7.33 -2.91 -0.02 5.05 16 37 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 38 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 39 H 0.11 5.84 6.32 -2.91 -0.02 5.82 16 40 H 0.29 12.81 8.30 -92.71 -0.77 12.04 16 41 H 0.10 3.01 7.12 -2.38 -0.02 3.00 16 42 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -64.37 358.53 -3.25 -67.62 By element: Atomic # 1 Polarization: 46.02 SS G_CDS: -0.57 Total: 45.45 kcal Atomic # 6 Polarization: -67.66 SS G_CDS: 3.80 Total: -63.87 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -2.90 Total: -99.61 kcal Atomic # 8 Polarization: -105.71 SS G_CDS: -5.31 Total: -111.02 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.74 kcal Atomic # 16 Polarization: 122.98 SS G_CDS: -0.29 Total: 122.69 kcal Total: -64.37 -3.25 -67.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.127 kcal (2) G-P(sol) polarization free energy of solvation -64.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds