Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47541 * 2 1 4 4 S 1.81408 * 109.47037 * 119.99925 * 2 1 3 5 5 O 1.42098 * 110.53873 * 308.37365 * 4 2 1 6 6 O 1.42099 * 110.53957 * 171.62422 * 4 2 1 7 7 N 1.65599 * 104.45079 * 60.00071 * 4 2 1 8 8 N 1.40099 * 120.00175 * 59.99701 * 7 4 2 9 9 C 1.29740 * 119.99953 * 180.02562 * 8 7 4 10 10 C 1.47504 * 119.99948 * 179.97438 * 9 8 7 11 11 C 1.39722 * 120.12663 * 359.97438 * 10 9 8 12 12 C 1.37946 * 119.95312 * 180.02562 * 11 10 9 13 13 C 1.38298 * 120.21372 * 359.73940 * 12 11 10 14 14 C 1.38839 * 120.25992 * 0.51397 * 13 12 11 15 15 O 1.35900 * 119.97830 * 179.76179 * 14 13 12 16 16 C 1.42898 * 117.00172 * 359.72335 * 15 14 13 17 17 C 1.52997 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00362 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99850 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47052 * 89.99717 * 22 20 18 24 24 H 1.48495 * 109.47307 * 209.99656 * 22 20 18 25 25 H 1.48500 * 109.47143 * 330.00164 * 22 20 18 26 26 C 1.38463 * 120.04277 * 359.48902 * 14 13 12 27 27 H 1.08999 * 109.47230 * 300.00472 * 1 2 3 28 28 H 1.09005 * 109.47254 * 60.00139 * 1 2 3 29 29 H 1.09004 * 109.47181 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47230 * 239.99528 * 2 1 3 31 31 H 1.08994 * 109.47151 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46732 * 300.00180 * 3 2 1 33 33 H 1.08999 * 109.47243 * 59.99537 * 3 2 1 34 34 H 0.96998 * 119.99545 * 240.00521 * 7 4 2 35 35 H 1.07999 * 120.00180 * 0.02562 * 9 8 7 36 36 H 1.07999 * 120.02839 * 359.97438 * 11 10 9 37 37 H 1.07999 * 119.89423 * 180.02562 * 12 11 10 38 38 H 1.08004 * 119.87350 * 180.27214 * 13 12 11 39 39 H 1.09002 * 109.47259 * 300.00149 * 16 15 14 40 40 H 1.09001 * 109.47074 * 60.00171 * 16 15 14 41 41 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 42 42 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 43 43 H 0.96994 * 119.99814 * 180.02562 * 21 20 18 44 44 H 1.07997 * 120.10987 * 180.23187 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8552 1.4812 5 8 1.5220 -0.3244 2.6483 6 8 3.5420 -1.0386 1.4114 7 7 1.5164 -2.3863 1.3557 8 7 1.8456 -3.1865 0.2539 9 6 1.3609 -4.3859 0.1554 10 6 1.7070 -5.2283 -1.0050 11 6 2.5562 -4.7370 -1.9998 12 6 2.8772 -5.5276 -3.0837 13 6 2.3652 -6.8082 -3.1868 14 6 1.5164 -7.3035 -2.2061 15 8 1.0127 -8.5609 -2.3157 16 6 1.3939 -9.3143 -3.4686 17 6 0.7345 -10.6939 -3.4174 18 6 1.1370 -11.4886 -4.6328 19 1 1.7975 -11.0534 -5.3682 20 6 0.6629 -12.7717 -4.8057 21 7 1.0145 -13.4655 -5.8662 22 14 -0.4779 -13.5254 -3.5327 23 1 -1.8871 -13.2224 -3.8899 24 1 -0.2807 -14.9968 -3.5007 25 1 -0.1727 -12.9558 -2.1957 26 6 1.1871 -6.5191 -1.1136 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 0.9263 -2.7290 2.0450 35 1 0.7032 -4.7673 0.9225 36 1 2.9605 -3.7386 -1.9207 37 1 3.5340 -5.1471 -3.8518 38 1 2.6236 -7.4241 -4.0356 39 1 1.0713 -8.7901 -4.3682 40 1 2.4776 -9.4304 -3.4848 41 1 1.0575 -11.2178 -2.5178 42 1 -0.3492 -10.5783 -3.4009 43 1 0.6807 -14.3680 -5.9879 44 1 0.5299 -6.9046 -0.3483 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726738156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -86.108981 kcal Electronic energy + Delta-G solvation = -25795.603805 eV Core-core repulsion = 21839.994262 eV Total energy + Delta-G solvation = -3955.609542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.03712 -39.00199 -38.38051 -37.66094 -37.23089 -35.98719 -35.39116 -33.49538 -32.91113 -31.22599 -30.03428 -28.27743 -27.16859 -24.90847 -23.68417 -23.47215 -22.72515 -21.39704 -20.44600 -19.51061 -18.94354 -18.60541 -18.00915 -17.78650 -16.94619 -16.89184 -16.68683 -16.38712 -16.11197 -15.66733 -15.48448 -14.82092 -14.69036 -14.45887 -14.32196 -14.29260 -14.22747 -14.13206 -13.55643 -13.42272 -13.31385 -13.20634 -13.18517 -13.16388 -12.60779 -12.58123 -12.42598 -12.37755 -12.22335 -12.04596 -11.78664 -11.61286 -11.50935 -11.42436 -11.35902 -10.82226 -10.79301 -9.49512 -9.06766 -8.32955 -6.39593 -0.96606 -0.25029 0.53018 1.19534 1.37944 1.39173 1.39809 1.51990 2.30063 2.34958 2.55198 2.90803 3.02408 3.03326 3.28591 3.54002 3.69625 3.80403 3.94722 4.13829 4.16176 4.25639 4.27271 4.31091 4.47230 4.53068 4.55145 4.60924 4.65757 4.70860 4.74403 4.84167 4.93892 5.03960 5.09697 5.13919 5.16650 5.34283 5.39239 5.48708 5.54054 5.55864 5.82238 6.18150 6.53034 6.66759 6.70068 7.25720 8.82638 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029876 B = 0.001692 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.993129 B =16542.697556 C =16875.870637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.559 4.559 3 C -0.156 4.156 4 S 2.630 3.370 5 O -0.975 6.975 6 O -0.986 6.986 7 N -0.964 5.964 8 N -0.247 5.247 9 C 0.140 3.860 10 C -0.027 4.027 11 C -0.125 4.125 12 C -0.084 4.084 13 C -0.203 4.203 14 C 0.106 3.894 15 O -0.332 6.332 16 C 0.086 3.914 17 C -0.007 4.007 18 C -0.536 4.536 19 H 0.042 0.958 20 C 0.012 3.988 21 N -0.943 5.943 22 Si 0.949 3.051 23 H -0.265 1.265 24 H -0.282 1.282 25 H -0.248 1.248 26 C -0.125 4.125 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.155 0.845 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.411 0.589 35 H 0.159 0.841 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.127 0.873 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.269 0.731 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.986 30.293 13.723 33.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.674 4.674 3 C -0.215 4.215 4 S 2.726 3.274 5 O -0.964 6.964 6 O -0.976 6.976 7 N -0.807 5.807 8 N -0.054 5.054 9 C -0.072 4.072 10 C -0.030 4.030 11 C -0.145 4.145 12 C -0.102 4.102 13 C -0.223 4.223 14 C 0.061 3.939 15 O -0.246 6.246 16 C 0.012 3.988 17 C -0.045 4.045 18 C -0.574 4.574 19 H 0.060 0.940 20 C -0.186 4.186 21 N -0.583 5.583 22 Si 0.772 3.228 23 H -0.190 1.190 24 H -0.208 1.208 25 H -0.172 1.172 26 C -0.146 4.146 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.173 0.827 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.249 0.751 35 H 0.176 0.824 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.145 0.855 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.078 0.922 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.913 31.236 14.141 34.300 hybrid contribution -1.150 -1.634 0.011 1.998 sum -2.063 29.602 14.151 32.875 Atomic orbital electron populations 1.21727 0.88700 1.04247 1.05618 1.30010 1.08028 1.09685 1.19661 1.21850 1.02357 0.91118 1.06187 1.04724 0.73510 0.72310 0.76827 1.93594 1.78514 1.77461 1.46848 1.93556 1.32029 1.84175 1.87791 1.57322 1.63713 1.30925 1.28703 1.74418 1.18277 1.07338 1.05412 1.24517 0.95717 0.90418 0.96549 1.18114 0.98676 0.92194 0.93975 1.21477 0.98391 1.01068 0.93612 1.21156 0.98386 0.92301 0.98339 1.21682 1.01388 0.98768 1.00439 1.19227 0.94288 0.84875 0.95502 1.86034 1.68765 1.24152 1.45665 1.22669 0.99146 0.91540 0.85465 1.19448 0.96944 0.91563 0.96537 1.21137 1.30159 0.99464 1.06671 0.93974 1.25894 0.97760 0.97387 0.97560 1.70030 1.46551 1.11863 1.29856 0.85679 0.79313 0.77464 0.80367 1.18951 1.20767 1.17182 1.20574 1.03403 0.92768 0.97834 0.90476 0.88536 0.90920 0.82678 0.90728 0.87564 0.90434 0.75116 0.82448 0.83668 0.83244 0.85468 0.92203 0.92382 0.95370 0.95346 0.92184 0.83006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.06 71.98 0.65 -0.35 16 2 C -0.56 -5.24 3.57 30.59 0.11 -5.13 16 3 C -0.16 -1.16 9.20 71.98 0.66 -0.50 16 4 S 2.63 43.08 5.06 -56.49 -0.29 42.79 16 5 O -0.97 -19.95 17.96 -127.65 -2.29 -22.24 16 6 O -0.99 -24.47 18.09 -127.65 -2.31 -26.78 16 7 N -0.96 -13.36 6.31 37.02 0.23 -13.13 16 8 N -0.25 -3.91 10.56 -52.16 -0.55 -4.46 16 9 C 0.14 1.98 10.75 87.45 0.94 2.92 16 10 C -0.03 -0.50 5.87 -20.15 -0.12 -0.62 16 11 C -0.13 -2.39 9.57 22.56 0.22 -2.17 16 12 C -0.08 -1.73 10.02 22.21 0.22 -1.50 16 13 C -0.20 -5.29 9.03 22.43 0.20 -5.09 16 14 C 0.11 3.03 6.68 22.47 0.15 3.18 16 15 O -0.33 -11.55 10.13 -92.43 -0.94 -12.49 16 16 C 0.09 3.32 4.68 71.98 0.34 3.66 16 17 C -0.01 -0.34 4.41 29.85 0.13 -0.21 16 18 C -0.54 -29.90 9.66 25.60 0.25 -29.65 16 19 H 0.04 2.54 7.99 -2.91 -0.02 2.52 16 20 C 0.01 0.68 5.47 84.65 0.46 1.15 16 21 N -0.94 -57.42 13.96 21.45 0.30 -57.13 16 22 Si 0.95 43.04 27.47 68.60 1.88 44.93 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 26 C -0.12 -2.75 9.73 22.65 0.22 -2.53 16 27 H 0.08 0.52 8.11 -2.39 -0.02 0.50 16 28 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 29 H 0.07 0.47 7.91 -2.38 -0.02 0.45 16 30 H 0.16 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.41 3.81 8.75 -217.37 -1.90 1.90 16 35 H 0.16 1.20 8.02 -2.91 -0.02 1.18 16 36 H 0.15 2.34 7.55 -2.91 -0.02 2.32 16 37 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 38 H 0.13 3.42 6.28 -2.91 -0.02 3.40 16 39 H 0.06 2.23 7.67 -2.39 -0.02 2.21 16 40 H 0.06 2.19 7.64 -2.39 -0.02 2.17 16 41 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 42 H 0.03 1.27 7.57 -2.39 -0.02 1.26 16 43 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -75.80 387.83 -0.47 -76.27 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -0.95 Total: 9.08 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 4.44 Total: -36.85 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -0.02 Total: -74.72 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -5.54 Total: -61.51 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.93 kcal Atomic # 16 Polarization: 43.08 SS G_CDS: -0.29 Total: 42.79 kcal Total: -75.80 -0.47 -76.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726738156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.835 kcal (2) G-P(sol) polarization free energy of solvation -75.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds