Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47364 * 2 1 4 4 N 1.46497 * 109.47700 * 184.84255 * 3 2 1 5 5 C 1.46507 * 119.99870 * 276.86916 * 4 3 2 6 6 S 1.65600 * 120.00367 * 96.85740 * 4 3 2 7 7 O 1.42098 * 106.40027 * 330.36067 * 6 4 3 8 8 O 1.42097 * 106.40439 * 197.43837 * 6 4 3 9 9 N 1.65599 * 107.21790 * 83.89653 * 6 4 3 10 10 C 1.34777 * 119.99813 * 64.92120 * 9 6 4 11 11 O 1.21281 * 120.00086 * 354.51747 * 10 9 6 12 12 C 1.50695 * 120.00029 * 174.52039 * 10 9 6 13 13 C 1.50705 * 109.47327 * 180.02562 * 12 10 9 14 14 C 1.37638 * 120.12542 * 264.99555 * 13 12 10 15 15 C 1.38611 * 120.24558 * 179.97438 * 14 13 12 16 16 C 1.38656 * 120.50419 * 0.02955 * 15 14 13 17 17 C 1.37604 * 120.24531 * 0.02562 * 16 15 14 18 18 C 1.40695 * 120.12774 * 84.72386 * 13 12 10 19 19 C 1.41400 * 120.24315 * 359.97438 * 18 13 12 20 20 H 1.08002 * 120.00166 * 327.26743 * 19 18 13 21 21 C 1.39943 * 119.99862 * 147.27375 * 19 18 13 22 22 N 1.30819 * 119.99923 * 346.29083 * 21 19 18 23 23 Si 1.86800 * 120.00028 * 166.29760 * 21 19 18 24 24 H 1.48495 * 109.47243 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47348 * 119.99731 * 23 21 19 26 26 H 1.48505 * 109.46998 * 239.99927 * 23 21 19 27 27 H 1.09004 * 109.47199 * 300.00040 * 1 2 3 28 28 H 1.09002 * 109.47170 * 59.99522 * 1 2 3 29 29 H 1.09000 * 109.47382 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46783 * 240.00300 * 2 1 3 31 31 H 1.09000 * 109.47459 * 120.00031 * 2 1 3 32 32 H 1.08997 * 109.47207 * 64.84065 * 3 2 1 33 33 H 1.09000 * 109.47234 * 304.84437 * 3 2 1 34 34 H 1.08994 * 109.46632 * 269.98886 * 5 4 3 35 35 H 1.08999 * 109.47055 * 29.98987 * 5 4 3 36 36 H 1.09006 * 109.47057 * 149.99645 * 5 4 3 37 37 H 0.97004 * 120.00196 * 244.92644 * 9 6 4 38 38 H 1.08997 * 109.46853 * 299.99699 * 12 10 9 39 39 H 1.09004 * 109.47385 * 59.99562 * 12 10 9 40 40 H 1.07995 * 119.87641 * 0.02562 * 14 13 12 41 41 H 1.08006 * 119.74854 * 179.97438 * 15 14 13 42 42 H 1.08001 * 119.87802 * 179.97438 * 16 15 14 43 43 H 1.08001 * 120.12660 * 179.97438 * 17 16 15 44 44 H 0.97002 * 119.99850 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5003 1.4442 -0.1166 5 6 4.3306 1.2579 1.0760 6 16 4.2126 1.6564 -1.5964 7 8 3.3086 1.1271 -2.5565 8 8 5.5549 1.2093 -1.4635 9 7 4.2883 3.2871 -1.8747 10 6 5.0534 4.0700 -1.0885 11 8 5.6072 3.5983 -0.1181 12 6 5.2206 5.5316 -1.4152 13 6 6.1172 6.1763 -0.3896 14 6 5.5716 6.8201 0.6977 15 6 6.3939 7.4134 1.6428 16 6 7.7728 7.3664 1.5048 17 6 8.3400 6.7292 0.4251 18 6 7.5151 6.1173 -0.5370 19 6 8.0869 5.4532 -1.6467 20 1 7.5954 4.5906 -2.0718 21 6 9.2898 5.9137 -2.1940 22 7 9.7472 7.0950 -1.8673 23 14 10.2421 4.8416 -3.3911 24 1 9.5173 3.5615 -3.5937 25 1 10.3737 5.5474 -4.6909 26 1 11.5927 4.5634 -2.8399 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.7492 1.9306 0.9301 33 1 1.6076 1.9807 -0.8434 34 1 4.5475 2.2281 1.5228 35 1 3.7978 0.6371 1.7963 36 1 5.2643 0.7699 0.7961 37 1 3.7819 3.6787 -2.6035 38 1 5.6679 5.6340 -2.4039 39 1 4.2462 6.0201 -1.4049 40 1 4.4989 6.8624 0.8154 41 1 5.9572 7.9168 2.4927 42 1 8.4039 7.8325 2.2470 43 1 9.4143 6.6941 0.3193 44 1 10.5808 7.4143 -2.2469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761115614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = -126.797315 kcal Electronic energy + Delta-G solvation = -28367.619763 eV Core-core repulsion = 24410.245842 eV Total energy + Delta-G solvation = -3957.373921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.15471 -39.20611 -38.55974 -37.98386 -37.19370 -35.46101 -35.43670 -33.80574 -33.39468 -31.36055 -28.71217 -28.36603 -26.89644 -25.77659 -23.35564 -22.80432 -22.48195 -21.30336 -20.71178 -19.28648 -19.04377 -18.82806 -18.21496 -17.26728 -17.11378 -16.50154 -16.30783 -15.84538 -15.69039 -15.48433 -15.30612 -15.15507 -15.00943 -14.35986 -14.13777 -13.94054 -13.87748 -13.50046 -13.46494 -13.40965 -13.38397 -13.07890 -12.94334 -12.80270 -12.77278 -12.66669 -12.48495 -12.43243 -12.23316 -12.13856 -11.85952 -11.52661 -11.31510 -11.26392 -11.15555 -11.04298 -10.16516 -9.18934 -9.12968 -8.58774 -6.31642 -0.77117 0.97524 1.10427 1.20877 1.35293 1.47898 1.49179 1.64506 2.20553 2.25971 2.79361 3.11486 3.49229 3.67475 3.87819 4.05418 4.06425 4.17833 4.38019 4.40963 4.41127 4.55905 4.61477 4.65072 4.70057 4.71955 4.81630 4.91424 4.97382 5.02196 5.07895 5.20437 5.22221 5.29835 5.34171 5.39170 5.53444 5.53931 5.76001 5.84467 6.04131 6.17022 6.21536 6.42961 6.65460 6.75581 7.00077 7.10592 8.39926 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.003873 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.354974 B = 7228.068071 C = 8517.003721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.114 3.886 4 N -0.993 5.993 5 C 0.093 3.907 6 S 2.778 3.222 7 O -0.977 6.977 8 O -0.997 6.997 9 N -1.054 6.054 10 C 0.540 3.460 11 O -0.511 6.511 12 C -0.072 4.072 13 C -0.186 4.186 14 C -0.086 4.086 15 C -0.232 4.232 16 C -0.117 4.117 17 C -0.184 4.184 18 C 0.100 3.900 19 C -0.492 4.492 20 H 0.066 0.934 21 C 0.041 3.959 22 N -0.831 5.831 23 Si 0.959 3.041 24 H -0.269 1.269 25 H -0.258 1.258 26 H -0.269 1.269 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.447 0.553 38 H 0.106 0.894 39 H 0.135 0.865 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.758 -7.539 1.600 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C -0.010 4.010 4 N -0.836 5.836 5 C -0.052 4.052 6 S 2.787 3.213 7 O -0.960 6.960 8 O -0.980 6.980 9 N -0.823 5.823 10 C 0.328 3.672 11 O -0.382 6.382 12 C -0.113 4.113 13 C -0.188 4.188 14 C -0.104 4.104 15 C -0.250 4.250 16 C -0.135 4.135 17 C -0.204 4.204 18 C 0.098 3.902 19 C -0.522 4.522 20 H 0.084 0.916 21 C -0.173 4.173 22 N -0.458 5.458 23 Si 0.781 3.219 24 H -0.193 1.193 25 H -0.182 1.182 26 H -0.194 1.194 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.078 0.922 37 H 0.286 0.714 38 H 0.124 0.876 39 H 0.153 0.847 40 H 0.145 0.855 41 H 0.137 0.863 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.809 -8.377 1.681 18.856 hybrid contribution 0.888 0.101 -0.700 1.135 sum -15.920 -8.276 0.981 17.970 Atomic orbital electron populations 1.21691 0.93434 1.02638 1.02731 1.21986 0.97657 0.96526 1.02412 1.21699 0.76123 0.98290 1.04903 1.57391 1.15329 1.86742 1.24146 1.21592 0.94375 1.02426 0.86800 1.02177 0.72651 0.73282 0.73174 1.93623 1.65546 1.76626 1.60254 1.93616 1.38084 1.80009 1.86335 1.55258 1.55118 1.29914 1.42016 1.21281 0.74696 0.90721 0.80508 1.90806 1.44392 1.75419 1.27579 1.20473 1.01845 0.88393 1.00621 1.19551 0.92894 1.07094 0.99299 1.20785 0.98919 0.97160 0.93496 1.20778 0.93053 1.09021 1.02196 1.20967 0.95759 0.99501 0.97293 1.21184 0.98545 1.04994 0.95636 1.17697 0.91618 0.89567 0.91337 1.19581 1.06513 1.12690 1.13426 0.91561 1.26474 0.97302 0.95277 0.98235 1.69848 1.19916 1.16762 1.39234 0.85508 0.78540 0.79228 0.78634 1.19339 1.18212 1.19368 0.91147 0.92302 0.91950 0.93154 0.90798 0.87881 0.89373 0.92690 0.87816 0.92232 0.71416 0.87576 0.84707 0.85521 0.86302 0.87710 0.89615 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -0.99 16 2 C -0.15 -2.33 6.25 30.59 0.19 -2.14 16 3 C 0.11 1.92 5.34 86.38 0.46 2.38 16 4 N -0.99 -23.98 3.19 -539.13 -1.72 -25.70 16 5 C 0.09 2.32 9.67 127.77 1.24 3.55 16 6 S 2.78 83.87 5.63 -56.49 -0.32 83.55 16 7 O -0.98 -29.36 17.30 -128.00 -2.21 -31.58 16 8 O -1.00 -40.53 15.74 -121.45 -1.91 -42.44 16 9 N -1.05 -28.06 5.75 -173.54 -1.00 -29.06 16 10 C 0.54 18.70 7.29 87.66 0.64 19.34 16 11 O -0.51 -21.69 13.19 11.45 0.15 -21.54 16 12 C -0.07 -2.45 5.20 29.10 0.15 -2.30 16 13 C -0.19 -8.23 4.43 -19.40 -0.09 -8.31 16 14 C -0.09 -3.42 9.66 22.22 0.21 -3.20 16 15 C -0.23 -9.60 10.05 22.46 0.23 -9.38 16 16 C -0.12 -5.44 10.02 22.22 0.22 -5.22 16 17 C -0.18 -9.85 8.64 22.73 0.20 -9.66 16 18 C 0.10 5.28 5.48 -21.29 -0.12 5.16 16 19 C -0.49 -26.52 7.96 23.46 0.19 -26.33 16 20 H 0.07 3.56 6.92 -2.91 -0.02 3.54 16 21 C 0.04 2.13 5.17 85.26 0.44 2.57 16 22 N -0.83 -44.19 11.27 21.83 0.25 -43.95 16 23 Si 0.96 40.59 29.58 68.60 2.03 42.62 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.10 1.30 8.12 -2.39 -0.02 1.28 16 33 H 0.09 1.29 7.72 -2.39 -0.02 1.28 16 34 H 0.05 1.53 7.10 -2.39 -0.02 1.51 16 35 H 0.10 1.79 8.07 -2.39 -0.02 1.77 16 36 H 0.06 1.77 7.00 -2.38 -0.02 1.75 16 37 H 0.45 7.81 8.83 -96.74 -0.85 6.95 16 38 H 0.11 3.68 7.19 -2.39 -0.02 3.66 16 39 H 0.14 3.18 8.05 -2.38 -0.02 3.16 16 40 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 41 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 42 H 0.10 4.35 8.06 -2.91 -0.02 4.32 16 43 H 0.09 4.89 6.63 -2.91 -0.02 4.87 16 44 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 Total: -1.00 -74.43 376.86 0.10 -74.32 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.16 Total: 28.31 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 4.68 Total: -34.53 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -2.47 Total: -98.71 kcal Atomic # 8 Polarization: -91.59 SS G_CDS: -3.97 Total: -95.56 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Atomic # 16 Polarization: 83.87 SS G_CDS: -0.32 Total: 83.55 kcal Total: -74.43 0.10 -74.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761115614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.475 kcal (2) G-P(sol) polarization free energy of solvation -74.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds