Wall clock time and date at job start Sat Apr 11 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.37162 * 2 1 4 4 C 1.53746 * 110.41857 * 237.62546 * 2 1 3 5 5 N 1.46542 * 105.19229 * 241.11245 * 4 2 1 6 6 C 1.34770 * 124.95951 * 180.02562 * 5 4 2 7 7 O 1.21396 * 119.99863 * 174.90466 * 6 5 4 8 8 C 1.49218 * 120.00158 * 354.90231 * 6 5 4 9 9 O 1.21404 * 120.00068 * 5.06968 * 8 6 5 10 10 N 1.34781 * 119.99532 * 185.06766 * 8 6 5 11 11 C 1.40300 * 119.99483 * 179.97438 * 10 8 6 12 12 C 1.40722 * 126.10028 * 0.03342 * 11 10 8 13 13 N 1.30878 * 108.37777 * 179.97438 * 12 11 10 14 14 N 1.40060 * 108.43298 * 359.97438 * 13 12 11 15 15 C 1.37294 * 126.05370 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00162 * 180.02562 * 15 14 13 17 17 C 1.39002 * 120.00254 * 0.03022 * 15 14 13 18 18 N 1.31286 * 120.00173 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00427 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47008 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47184 * 119.99524 * 19 17 15 22 22 H 1.48499 * 109.47590 * 239.99958 * 19 17 15 23 23 C 1.35785 * 126.09686 * 179.71024 * 11 10 8 24 24 C 1.39633 * 110.07736 * 0.02562 * 5 4 2 25 25 C 1.39693 * 129.33371 * 179.97438 * 24 5 4 26 26 C 1.37817 * 120.27798 * 179.97438 * 25 24 5 27 27 C 1.38306 * 120.23377 * 0.06143 * 26 25 24 28 28 C 1.38240 * 119.84008 * 359.96990 * 27 26 25 29 29 C 1.38168 * 120.14697 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47227 * 180.69823 * 1 2 3 31 31 H 1.08996 * 109.47486 * 300.70376 * 1 2 3 32 32 H 1.09005 * 109.47037 * 60.70621 * 1 2 3 33 33 H 1.09001 * 110.30478 * 0.04379 * 4 2 1 34 34 H 1.08999 * 110.29807 * 122.08874 * 4 2 1 35 35 H 0.97001 * 120.00227 * 0.02562 * 10 8 6 36 36 H 1.08007 * 125.81426 * 359.97438 * 12 11 10 37 37 H 0.96996 * 120.00667 * 180.02562 * 18 17 15 38 38 H 1.07993 * 126.25424 * 0.02562 * 23 11 10 39 39 H 1.08001 * 119.86070 * 0.02988 * 25 24 5 40 40 H 1.08005 * 119.88209 * 180.02562 * 26 25 24 41 41 H 1.08005 * 120.08427 * 179.97438 * 27 26 25 42 42 H 1.07997 * 119.92947 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9095 1.0218 0.0000 4 6 2.0664 -0.7715 -1.2169 5 7 2.8407 -1.8824 -0.6565 6 6 3.4899 -2.8144 -1.3818 7 8 4.1813 -3.6431 -0.8259 8 6 3.3589 -2.8279 -2.8682 9 8 2.7433 -1.9460 -3.4313 10 7 3.9240 -3.8193 -3.5854 11 6 3.8003 -3.8323 -4.9829 12 6 3.1195 -2.8800 -5.7639 13 7 3.2230 -3.2276 -7.0214 14 7 3.9709 -4.4096 -7.0941 15 6 4.2970 -5.0903 -8.2409 16 1 4.8809 -5.9970 -8.1833 17 6 3.8757 -4.6125 -9.4764 18 7 3.1655 -3.5105 -9.5466 19 14 4.3199 -5.5382 -11.0369 20 1 5.1204 -6.7396 -10.6888 21 1 3.0776 -5.9559 -11.7353 22 1 5.1152 -4.6550 -11.9271 23 6 4.3215 -4.7626 -5.8235 24 6 2.8075 -1.8341 0.7386 25 6 3.4032 -2.6894 1.6685 26 6 3.2475 -2.4642 3.0192 27 6 2.4988 -1.3899 3.4643 28 6 1.9055 -0.5391 2.5504 29 6 2.0596 -0.7600 1.1952 30 1 -0.3633 -1.0276 0.0125 31 1 -0.3634 0.5247 0.8836 32 1 -0.3633 0.5028 -0.8963 33 1 1.2403 -1.1516 -1.8179 34 1 2.7073 -0.1283 -1.8199 35 1 4.4155 -4.5241 -3.1354 36 1 2.5999 -2.0104 -5.3894 37 1 2.8711 -3.1773 -10.4087 38 1 4.9050 -5.6255 -5.5384 39 1 3.9891 -3.5303 1.3276 40 1 3.7113 -3.1294 3.7327 41 1 2.3780 -1.2159 4.5234 42 1 1.3210 0.3004 2.8964 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775530161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:21 Heat of formation + Delta-G solvation = 39.698710 kcal Electronic energy + Delta-G solvation = -28281.311099 eV Core-core repulsion = 24228.005787 eV Total energy + Delta-G solvation = -4053.305312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.67311 -41.74189 -40.61084 -39.31247 -37.71017 -36.13681 -35.10629 -34.47774 -32.32908 -31.18155 -30.75011 -29.91311 -27.98898 -27.18442 -25.81941 -23.99417 -23.34920 -22.86194 -21.72951 -21.45620 -21.05221 -19.45606 -18.89516 -18.25055 -17.67459 -17.47771 -16.95274 -16.87668 -16.65566 -16.21105 -15.95608 -15.56361 -15.35023 -15.26890 -14.92506 -14.82113 -14.66887 -14.25284 -13.97296 -13.63669 -13.53399 -13.38393 -13.14858 -13.06012 -12.95804 -12.91063 -12.64536 -12.28934 -12.05843 -12.04741 -12.03443 -11.65570 -11.31130 -11.10678 -10.90469 -10.61923 -10.16843 -9.77916 -8.95365 -8.65814 -8.51017 -6.28798 -0.22133 0.40433 0.62229 1.00321 1.26478 1.40494 1.59112 1.67643 1.93043 2.05996 2.26603 2.45011 2.74936 2.82122 3.05620 3.27136 3.39972 3.50825 3.99328 4.05533 4.10202 4.27827 4.35729 4.41356 4.48260 4.54533 4.56001 4.66760 4.71232 4.90640 4.91380 4.95638 5.01885 5.10231 5.13074 5.20984 5.26692 5.33526 5.41780 5.49097 5.59082 5.88059 5.93538 5.99226 6.14285 6.29622 6.52856 6.66383 6.94675 7.38203 7.59789 8.48326 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029716 B = 0.002217 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.035218 B =12625.355575 C =13473.667114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.055 4.055 3 H 0.118 0.882 4 C 0.105 3.895 5 N -0.527 5.527 6 C 0.523 3.477 7 O -0.520 6.520 8 C 0.492 3.508 9 O -0.528 6.528 10 N -0.579 5.579 11 C -0.058 4.058 12 C -0.045 4.045 13 N -0.307 5.307 14 N -0.162 5.162 15 C -0.352 4.352 16 H 0.142 0.858 17 C -0.005 4.005 18 N -0.820 5.820 19 Si 1.020 2.980 20 H -0.242 1.242 21 H -0.272 1.272 22 H -0.272 1.272 23 C -0.074 4.074 24 C 0.104 3.896 25 C -0.150 4.150 26 C -0.099 4.099 27 C -0.130 4.130 28 C -0.077 4.077 29 C -0.125 4.125 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.423 0.577 36 H 0.178 0.822 37 H 0.278 0.722 38 H 0.188 0.812 39 H 0.119 0.881 40 H 0.149 0.851 41 H 0.160 0.840 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 4.807 22.882 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.073 4.073 3 H 0.136 0.864 4 C -0.016 4.016 5 N -0.250 5.250 6 C 0.308 3.692 7 O -0.396 6.396 8 C 0.273 3.727 9 O -0.406 6.406 10 N -0.223 5.223 11 C -0.164 4.164 12 C -0.220 4.220 13 N -0.138 5.138 14 N 0.070 4.930 15 C -0.483 4.483 16 H 0.159 0.841 17 C -0.217 4.217 18 N -0.447 5.447 19 Si 0.838 3.162 20 H -0.165 1.165 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.225 4.225 24 C 0.010 3.990 25 C -0.171 4.171 26 C -0.117 4.117 27 C -0.148 4.148 28 C -0.096 4.096 29 C -0.128 4.128 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.260 0.740 36 H 0.195 0.805 37 H 0.088 0.912 38 H 0.205 0.795 39 H 0.137 0.863 40 H 0.167 0.833 41 H 0.178 0.822 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.027 5.366 21.282 22.156 hybrid contribution 0.720 -0.974 -0.054 1.212 sum -2.307 4.393 21.228 21.800 Atomic orbital electron populations 1.21789 0.91462 1.02100 1.03865 1.20858 0.98014 0.99756 0.88722 0.86380 1.22617 0.95831 0.86335 0.96836 1.45564 1.47420 1.26845 1.05193 1.19852 0.80313 0.81322 0.87723 1.90700 1.38103 1.38227 1.72564 1.19705 0.82094 0.83443 0.87482 1.90643 1.41462 1.37029 1.71425 1.42010 1.50662 1.25786 1.03866 1.17258 1.14516 1.02294 0.82304 1.24263 1.05305 1.02012 0.90436 1.78167 1.17567 1.00361 1.17717 1.44855 1.28981 1.14373 1.04786 1.20696 1.36269 1.09206 0.82106 0.84095 1.26885 0.94555 0.96663 1.03634 1.70372 1.27705 1.19221 1.27427 0.84526 0.78604 0.78361 0.74669 1.16457 1.19673 1.19700 1.21985 1.11792 1.04418 0.84324 1.18736 1.00185 0.98233 0.81797 1.21064 1.02442 1.00254 0.93296 1.21235 0.98329 0.98485 0.93686 1.21494 0.97581 0.94569 1.01183 1.20775 0.99002 1.00245 0.89532 1.20331 1.00494 0.96249 0.95692 0.93680 0.89744 0.90890 0.89387 0.89347 0.73955 0.80537 0.91183 0.79543 0.86282 0.83307 0.82216 0.82505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.05 71.98 0.65 -1.20 16 2 C -0.06 -0.95 3.62 -11.12 -0.04 -0.99 16 3 H 0.12 1.56 8.14 -2.39 -0.02 1.55 16 4 C 0.10 2.56 5.33 86.62 0.46 3.02 16 5 N -0.53 -15.28 3.12 -631.26 -1.97 -17.26 16 6 C 0.52 17.36 7.84 87.20 0.68 18.05 16 7 O -0.52 -17.98 14.66 -3.39 -0.05 -18.03 16 8 C 0.49 18.18 7.81 87.20 0.68 18.86 16 9 O -0.53 -21.21 11.22 -3.42 -0.04 -21.25 16 10 N -0.58 -21.77 5.45 -305.41 -1.66 -23.44 16 11 C -0.06 -2.65 6.90 37.82 0.26 -2.39 16 12 C -0.04 -2.35 10.84 85.44 0.93 -1.43 16 13 N -0.31 -18.03 10.39 -56.43 -0.59 -18.62 16 14 N -0.16 -8.88 3.73 -189.98 -0.71 -9.59 16 15 C -0.35 -18.34 10.25 84.02 0.86 -17.48 16 16 H 0.14 6.40 7.83 -2.91 -0.02 6.37 16 17 C -0.01 -0.26 5.50 84.96 0.47 0.20 16 18 N -0.82 -46.31 11.81 21.66 0.26 -46.05 16 19 Si 1.02 37.94 29.55 68.60 2.03 39.97 16 20 H -0.24 -8.10 7.11 99.48 0.71 -7.39 16 21 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 22 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 23 C -0.07 -3.44 11.50 83.41 0.96 -2.48 16 24 C 0.10 2.70 6.62 38.34 0.25 2.95 16 25 C -0.15 -3.70 9.46 22.52 0.21 -3.48 16 26 C -0.10 -1.70 10.02 22.19 0.22 -1.48 16 27 C -0.13 -1.70 10.06 22.29 0.22 -1.47 16 28 C -0.08 -1.08 10.04 22.25 0.22 -0.86 16 29 C -0.13 -2.44 5.55 -19.63 -0.11 -2.55 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.09 2.30 7.05 -2.39 -0.02 2.29 16 34 H 0.09 2.22 7.77 -2.39 -0.02 2.20 16 35 H 0.42 13.50 8.30 -92.71 -0.77 12.74 16 36 H 0.18 9.05 5.92 -2.91 -0.02 9.03 16 37 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.19 6.94 8.06 -2.91 -0.02 6.92 16 39 H 0.12 3.34 6.29 -2.91 -0.02 3.32 16 40 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 42 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -73.02 357.90 4.52 -68.50 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: 0.32 Total: 38.49 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 6.94 Total: 7.28 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -4.67 Total: -114.96 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.09 Total: -39.28 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -73.02 4.52 -68.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775530161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.194 kcal (2) G-P(sol) polarization free energy of solvation -73.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds