Wall clock time and date at job start Sat Apr 11 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99872 * 2 1 4 4 H 1.08997 * 109.47584 * 29.99877 * 3 2 1 5 5 C 1.50703 * 109.47221 * 270.00125 * 3 2 1 6 6 C 1.38238 * 120.00177 * 334.72407 * 5 3 2 7 7 C 1.38225 * 120.00989 * 179.74650 * 6 5 3 8 8 C 1.38262 * 120.02527 * 0.55293 * 7 6 5 9 9 C 1.38194 * 120.01476 * 359.70426 * 8 7 6 10 10 C 1.38323 * 120.01245 * 155.00230 * 5 3 2 11 11 Cl 1.73603 * 120.01014 * 359.97438 * 10 5 3 12 12 C 1.53002 * 109.47124 * 150.00378 * 3 2 1 13 13 H 1.09002 * 109.47070 * 184.99838 * 12 3 2 14 14 C 1.52997 * 109.46817 * 304.99658 * 12 3 2 15 15 N 1.46899 * 109.47394 * 64.99800 * 12 3 2 16 16 C 1.46894 * 111.00220 * 155.00114 * 15 12 3 17 17 C 1.50694 * 109.47381 * 179.97438 * 16 15 12 18 18 O 1.21284 * 120.00225 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00497 * 180.02562 * 17 16 15 20 20 C 1.46500 * 120.00565 * 180.02562 * 19 17 16 21 21 C 1.50697 * 109.47523 * 179.97438 * 20 19 17 22 22 H 1.08007 * 119.99614 * 359.97438 * 21 20 19 23 23 C 1.37872 * 120.00237 * 180.02562 * 21 20 19 24 24 N 1.31511 * 120.00021 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00069 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47242 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47245 * 119.99812 * 25 23 21 28 28 H 1.48503 * 109.47128 * 239.99650 * 25 23 21 29 29 H 1.09002 * 109.47276 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46827 * 299.99807 * 1 2 3 31 31 H 1.09000 * 109.47075 * 60.00250 * 1 2 3 32 32 H 1.07993 * 119.99853 * 0.02562 * 6 5 3 33 33 H 1.07998 * 119.98595 * 180.24983 * 7 6 5 34 34 H 1.08003 * 119.99010 * 179.72083 * 8 7 6 35 35 H 1.07995 * 120.00771 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.47153 * 60.00231 * 14 12 3 37 37 H 1.08998 * 109.47533 * 179.97438 * 14 12 3 38 38 H 1.08996 * 109.47853 * 300.00202 * 14 12 3 39 39 H 1.00900 * 110.99934 * 278.95621 * 15 12 3 40 40 H 1.08998 * 109.47346 * 299.99916 * 16 15 12 41 41 H 1.09007 * 109.47035 * 60.00148 * 16 15 12 42 42 H 0.97005 * 119.99767 * 359.97438 * 19 17 16 43 43 H 1.08998 * 109.46677 * 299.99985 * 20 19 17 44 44 H 1.08993 * 109.47051 * 59.99762 * 20 19 17 45 45 H 0.97005 * 120.00338 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 6 2.3601 0.8346 -2.4334 7 6 2.5422 1.2554 -3.7374 8 6 2.5903 2.6062 -4.0282 9 6 2.4503 3.5366 -3.0160 10 6 2.2621 3.1160 -1.7113 11 17 2.0860 4.2841 -0.4392 12 6 3.3589 1.2633 0.7212 13 1 3.7609 2.2734 0.7994 14 6 3.1697 0.6798 2.1228 15 7 4.2938 0.4216 -0.0375 16 6 5.6860 0.7997 0.2393 17 6 6.6138 -0.0837 -0.5543 18 8 6.1599 -0.9433 -1.2795 19 7 7.9479 0.0814 -0.4582 20 6 8.8498 -0.7770 -1.2302 21 6 10.2781 -0.3893 -0.9461 22 1 10.4926 0.4164 -0.2595 23 6 11.3110 -1.0622 -1.5635 24 7 11.0498 -2.0429 -2.3999 25 14 13.0814 -0.5820 -1.2108 26 1 13.1056 0.5426 -0.2413 27 1 13.8052 -1.7454 -0.6382 28 1 13.7410 -0.1611 -2.4730 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.3270 -0.2206 -2.2063 33 1 2.6518 0.5287 -4.5287 34 1 2.7372 2.9343 -5.0466 35 1 2.4875 4.5917 -3.2433 36 1 2.7677 -0.3304 2.0446 37 1 4.1305 0.6492 2.6365 38 1 2.4760 1.3042 2.6858 39 1 4.1392 -0.5563 0.1568 40 1 5.8433 1.8402 -0.0446 41 1 5.8909 0.6783 1.3030 42 1 8.3110 0.7692 0.1215 43 1 8.6922 -1.8176 -0.9466 44 1 8.6454 -0.6553 -2.2938 45 1 11.7765 -2.5167 -2.8340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778247983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:35 Heat of formation + Delta-G solvation = -66.274117 kcal Electronic energy + Delta-G solvation = -27464.019535 eV Core-core repulsion = 23507.226391 eV Total energy + Delta-G solvation = -3956.793144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.07151 -38.78780 -37.96067 -36.56973 -35.99281 -34.08809 -32.32254 -32.03704 -30.76858 -30.45391 -27.64309 -27.30117 -25.83304 -25.24001 -22.64319 -22.39065 -21.89808 -20.61624 -19.61778 -17.51475 -17.19681 -16.88222 -16.05841 -15.79831 -15.54783 -15.32761 -15.02135 -14.82126 -14.68441 -14.42995 -14.12414 -13.81381 -13.72615 -13.53012 -13.33166 -12.83107 -12.54027 -12.46060 -12.23408 -12.00877 -11.92454 -11.76966 -11.64287 -11.45987 -11.39261 -11.18274 -11.08363 -10.92609 -10.88286 -10.85235 -10.30034 -9.87675 -9.35402 -8.98714 -8.84154 -8.71328 -8.70346 -8.24504 -7.81308 -6.14782 -4.21370 1.12828 1.31645 2.00546 3.24382 3.31414 3.34506 3.46287 3.53357 3.63629 3.85440 4.31936 4.45207 4.58739 4.78603 4.83123 4.93866 5.06347 5.10403 5.16257 5.21319 5.24100 5.25627 5.33101 5.43351 5.46566 5.48655 5.54143 5.65263 5.65993 5.69960 5.78548 5.92895 6.07606 6.17402 6.36749 6.49776 6.82445 6.89541 7.10139 7.36002 7.49395 7.53161 7.56103 7.70960 7.99986 8.68635 8.82329 9.17862 9.45583 10.95477 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.002634 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.643473 B =10626.089606 C =11039.766900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.141 3.859 4 H 0.075 0.925 5 C -0.082 4.082 6 C -0.053 4.053 7 C -0.117 4.117 8 C -0.110 4.110 9 C -0.118 4.118 10 C -0.035 4.035 11 Cl -0.082 7.082 12 C 0.093 3.907 13 H 0.090 0.910 14 C -0.181 4.181 15 N -0.655 5.655 16 C 0.040 3.960 17 C 0.498 3.502 18 O -0.542 6.542 19 N -0.716 5.716 20 C 0.252 3.748 21 C -0.542 4.542 22 H 0.063 0.937 23 C 0.063 3.937 24 N -0.885 5.885 25 Si 0.903 3.097 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.138 0.862 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.356 0.644 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.389 0.611 43 H 0.025 0.975 44 H 0.026 0.974 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.224 11.062 5.149 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.285 6.285 3 C 0.082 3.918 4 H 0.093 0.907 5 C -0.084 4.084 6 C -0.071 4.071 7 C -0.135 4.135 8 C -0.128 4.128 9 C -0.137 4.137 10 C -0.061 4.061 11 Cl -0.053 7.053 12 C -0.018 4.018 13 H 0.108 0.892 14 C -0.240 4.240 15 N -0.288 5.288 16 C -0.093 4.093 17 C 0.282 3.718 18 O -0.419 6.419 19 N -0.365 5.365 20 C 0.131 3.869 21 C -0.580 4.580 22 H 0.081 0.919 23 C -0.141 4.141 24 N -0.523 5.523 25 Si 0.730 3.270 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.156 0.844 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.177 0.823 40 H 0.111 0.889 41 H 0.070 0.930 42 H 0.221 0.779 43 H 0.043 0.957 44 H 0.044 0.956 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.379 10.590 4.030 25.980 hybrid contribution 1.253 0.614 1.331 1.928 sum -22.125 11.204 5.361 25.373 Atomic orbital electron populations 1.22810 0.81419 1.02734 0.99842 1.87962 1.19203 1.26670 1.94654 1.21076 0.94568 0.84911 0.91259 0.90730 1.19942 1.00720 0.90862 0.96837 1.20916 0.94910 1.00225 0.91069 1.21317 0.99149 0.95857 0.97167 1.21090 0.99746 0.93034 0.98929 1.20903 1.01714 1.00268 0.90820 1.20713 1.06697 0.89267 0.89441 1.98342 1.96142 1.58886 1.51931 1.21632 0.91209 0.98353 0.90589 0.89183 1.22448 1.02040 1.02525 0.96977 1.60153 1.00954 1.09068 1.58615 1.21865 0.89166 1.00230 0.98008 1.20332 0.83356 0.84894 0.83259 1.90660 1.76439 1.35009 1.39819 1.46443 1.05577 1.37715 1.46793 1.19064 0.86793 0.89761 0.91310 1.21274 0.90469 1.18749 1.27517 0.91910 1.24952 0.99609 0.94753 0.94745 1.69986 1.32559 1.21595 1.28146 0.86374 0.84004 0.78426 0.78177 1.19649 1.20819 1.20809 0.89534 0.94219 0.94111 0.84393 0.85551 0.85507 0.85416 0.91152 0.92367 0.92344 0.82298 0.88917 0.92982 0.77893 0.95667 0.95619 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.81 101.05 1.09 1.32 16 2 O -0.37 -3.93 8.26 -35.23 -0.29 -4.22 16 3 C 0.14 1.49 1.72 -27.88 -0.05 1.44 16 4 H 0.07 0.71 6.77 -51.93 -0.35 0.36 16 5 C -0.08 -0.97 4.60 -104.59 -0.48 -1.45 16 6 C -0.05 -0.67 8.98 -39.59 -0.36 -1.03 16 7 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 8 C -0.11 -1.18 10.05 -39.59 -0.40 -1.57 16 9 C -0.12 -1.28 9.83 -39.55 -0.39 -1.67 16 10 C -0.03 -0.39 6.31 -39.50 -0.25 -0.64 16 11 Cl -0.08 -0.82 27.16 -51.86 -1.41 -2.23 16 12 C 0.09 1.02 2.48 -67.71 -0.17 0.85 16 13 H 0.09 0.98 7.55 -51.93 -0.39 0.58 16 14 C -0.18 -1.71 8.96 37.16 0.33 -1.38 16 15 N -0.66 -9.04 4.95 -108.00 -0.53 -9.58 16 16 C 0.04 0.58 5.96 -4.98 -0.03 0.55 16 17 C 0.50 9.97 7.87 -10.99 -0.09 9.88 16 18 O -0.54 -13.06 16.20 5.55 0.09 -12.97 16 19 N -0.72 -15.20 5.55 -61.48 -0.34 -15.55 16 20 C 0.25 6.74 5.43 -5.19 -0.03 6.72 16 21 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 22 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 24 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 25 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.14 1.84 7.36 -52.49 -0.39 1.45 16 33 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.07 0.71 7.55 -51.93 -0.39 0.32 16 37 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.36 5.32 8.17 -39.29 -0.32 5.00 16 40 H 0.09 1.24 8.06 -51.93 -0.42 0.82 16 41 H 0.05 0.65 7.44 -51.93 -0.39 0.26 16 42 H 0.39 7.09 8.32 -40.82 -0.34 6.75 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 391.59 15.07 5.90 5.90 Total: -1.00 -32.40 391.59 -9.20 -41.60 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -6.71 Total: 8.87 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -1.62 Total: -2.25 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.14 Total: -50.67 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.20 Total: -17.19 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.41 Total: -2.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.40 -9.20 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778247983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.677 kcal (2) G-P(sol) polarization free energy of solvation -32.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds