Wall clock time and date at job start Sat Apr 11 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99872 * 2 1 4 4 H 1.08997 * 109.47584 * 29.99877 * 3 2 1 5 5 C 1.50703 * 109.47221 * 270.00125 * 3 2 1 6 6 C 1.38238 * 120.00177 * 334.72407 * 5 3 2 7 7 C 1.38225 * 120.00989 * 179.74650 * 6 5 3 8 8 C 1.38262 * 120.02527 * 0.55293 * 7 6 5 9 9 C 1.38194 * 120.01476 * 359.70426 * 8 7 6 10 10 C 1.38323 * 120.01245 * 155.00230 * 5 3 2 11 11 Cl 1.73603 * 120.01014 * 359.97438 * 10 5 3 12 12 C 1.53002 * 109.47124 * 150.00378 * 3 2 1 13 13 H 1.09002 * 109.47070 * 184.99838 * 12 3 2 14 14 C 1.52997 * 109.46817 * 304.99658 * 12 3 2 15 15 N 1.46899 * 109.47394 * 64.99800 * 12 3 2 16 16 C 1.46894 * 111.00220 * 155.00114 * 15 12 3 17 17 C 1.50694 * 109.47381 * 179.97438 * 16 15 12 18 18 O 1.21284 * 120.00225 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00497 * 180.02562 * 17 16 15 20 20 C 1.46500 * 120.00565 * 180.02562 * 19 17 16 21 21 C 1.50697 * 109.47523 * 179.97438 * 20 19 17 22 22 H 1.08007 * 119.99614 * 359.97438 * 21 20 19 23 23 C 1.37872 * 120.00237 * 180.02562 * 21 20 19 24 24 N 1.31511 * 120.00021 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00069 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47242 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47245 * 119.99812 * 25 23 21 28 28 H 1.48503 * 109.47128 * 239.99650 * 25 23 21 29 29 H 1.09002 * 109.47276 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46827 * 299.99807 * 1 2 3 31 31 H 1.09000 * 109.47075 * 60.00250 * 1 2 3 32 32 H 1.07993 * 119.99853 * 0.02562 * 6 5 3 33 33 H 1.07998 * 119.98595 * 180.24983 * 7 6 5 34 34 H 1.08003 * 119.99010 * 179.72083 * 8 7 6 35 35 H 1.07995 * 120.00771 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.47153 * 60.00231 * 14 12 3 37 37 H 1.08998 * 109.47533 * 179.97438 * 14 12 3 38 38 H 1.08996 * 109.47853 * 300.00202 * 14 12 3 39 39 H 1.00900 * 110.99934 * 278.95621 * 15 12 3 40 40 H 1.08998 * 109.47346 * 299.99916 * 16 15 12 41 41 H 1.09007 * 109.47035 * 60.00148 * 16 15 12 42 42 H 0.97005 * 119.99767 * 359.97438 * 19 17 16 43 43 H 1.08998 * 109.46677 * 299.99985 * 20 19 17 44 44 H 1.08993 * 109.47051 * 59.99762 * 20 19 17 45 45 H 0.97005 * 120.00338 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 6 2.3601 0.8346 -2.4334 7 6 2.5422 1.2554 -3.7374 8 6 2.5903 2.6062 -4.0282 9 6 2.4503 3.5366 -3.0160 10 6 2.2621 3.1160 -1.7113 11 17 2.0860 4.2841 -0.4392 12 6 3.3589 1.2633 0.7212 13 1 3.7609 2.2734 0.7994 14 6 3.1697 0.6798 2.1228 15 7 4.2938 0.4216 -0.0375 16 6 5.6860 0.7997 0.2393 17 6 6.6138 -0.0837 -0.5543 18 8 6.1599 -0.9433 -1.2795 19 7 7.9479 0.0814 -0.4582 20 6 8.8498 -0.7770 -1.2302 21 6 10.2781 -0.3893 -0.9461 22 1 10.4926 0.4164 -0.2595 23 6 11.3110 -1.0622 -1.5635 24 7 11.0498 -2.0429 -2.3999 25 14 13.0814 -0.5820 -1.2108 26 1 13.1056 0.5426 -0.2413 27 1 13.8052 -1.7454 -0.6382 28 1 13.7410 -0.1611 -2.4730 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.3270 -0.2206 -2.2063 33 1 2.6518 0.5287 -4.5287 34 1 2.7372 2.9343 -5.0466 35 1 2.4875 4.5917 -3.2433 36 1 2.7677 -0.3304 2.0446 37 1 4.1305 0.6492 2.6365 38 1 2.4760 1.3042 2.6858 39 1 4.1392 -0.5563 0.1568 40 1 5.8433 1.8402 -0.0446 41 1 5.8909 0.6783 1.3030 42 1 8.3110 0.7692 0.1215 43 1 8.6922 -1.8176 -0.9466 44 1 8.6454 -0.6553 -2.2938 45 1 11.7765 -2.5167 -2.8340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778247983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:35 Heat of formation + Delta-G solvation = -88.290937 kcal Electronic energy + Delta-G solvation = -27464.974256 eV Core-core repulsion = 23507.226391 eV Total energy + Delta-G solvation = -3957.747865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.96815 -40.35904 -38.83458 -37.38737 -37.01439 -36.03889 -34.32202 -33.00772 -31.66356 -31.42016 -29.51657 -28.00608 -26.91186 -26.39600 -24.31231 -23.49123 -22.83354 -21.52383 -21.30519 -19.01477 -18.28277 -17.75654 -17.60999 -17.05115 -16.79483 -16.60943 -16.45633 -15.93181 -15.70618 -15.48047 -15.27337 -15.17214 -14.65065 -14.52922 -14.42245 -14.18357 -13.93158 -13.82415 -13.51280 -13.28004 -12.94997 -12.88979 -12.73789 -12.72519 -12.58173 -12.46605 -12.27190 -12.21782 -11.99452 -11.87020 -11.66285 -11.44893 -10.80795 -10.70638 -10.61404 -9.79173 -9.72220 -9.57362 -9.25780 -8.28611 -6.45068 0.25819 0.44123 1.16675 1.43159 1.44297 1.57767 1.84005 2.30311 2.51231 2.75110 2.82664 3.06250 3.30370 3.66992 3.95596 3.99688 4.00642 4.12758 4.25061 4.33762 4.38468 4.40929 4.47537 4.51708 4.58501 4.60001 4.64983 4.81500 4.86458 4.91457 4.95837 5.08104 5.13070 5.26137 5.30341 5.33675 5.48966 5.50797 5.62254 5.70884 5.86427 5.94796 5.99169 6.30560 6.41147 6.66694 6.97824 7.24640 7.55795 8.83829 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.002634 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.643473 B =10626.089606 C =11039.766900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.384 6.384 3 C 0.143 3.857 4 H 0.088 0.912 5 C -0.088 4.088 6 C -0.071 4.071 7 C -0.132 4.132 8 C -0.113 4.113 9 C -0.122 4.122 10 C -0.044 4.044 11 Cl -0.069 7.069 12 C 0.095 3.905 13 H 0.097 0.903 14 C -0.174 4.174 15 N -0.669 5.669 16 C 0.057 3.943 17 C 0.494 3.506 18 O -0.588 6.588 19 N -0.711 5.711 20 C 0.269 3.731 21 C -0.554 4.554 22 H 0.083 0.917 23 C 0.003 3.997 24 N -0.931 5.931 25 Si 0.984 3.016 26 H -0.253 1.253 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.348 0.652 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.407 0.593 43 H -0.014 1.014 44 H -0.016 1.016 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.043 13.607 6.948 27.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.302 6.302 3 C 0.084 3.916 4 H 0.106 0.894 5 C -0.089 4.089 6 C -0.089 4.089 7 C -0.150 4.150 8 C -0.131 4.131 9 C -0.140 4.140 10 C -0.070 4.070 11 Cl -0.040 7.040 12 C -0.015 4.015 13 H 0.115 0.885 14 C -0.233 4.233 15 N -0.301 5.301 16 C -0.075 4.075 17 C 0.281 3.719 18 O -0.468 6.468 19 N -0.362 5.362 20 C 0.146 3.854 21 C -0.592 4.592 22 H 0.101 0.899 23 C -0.197 4.197 24 N -0.570 5.570 25 Si 0.808 3.192 26 H -0.176 1.176 27 H -0.204 1.204 28 H -0.205 1.205 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.167 0.833 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.242 0.758 43 H 0.004 0.996 44 H 0.002 0.998 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.228 13.184 5.872 27.346 hybrid contribution 1.082 -0.193 0.740 1.325 sum -22.146 12.990 6.611 26.512 Atomic orbital electron populations 1.22951 0.80131 1.03624 1.00455 1.87948 1.20695 1.26886 1.94687 1.21084 0.94654 0.85163 0.90650 0.89419 1.20073 1.00516 0.91045 0.97248 1.20882 0.96347 0.99762 0.91949 1.21514 0.99552 0.96839 0.97145 1.21361 0.99119 0.92483 1.00174 1.21205 1.00918 1.01286 0.90633 1.20839 1.06639 0.89400 0.90131 1.98341 1.96074 1.58212 1.51350 1.21700 0.90643 0.98036 0.91134 0.88542 1.22375 1.02660 1.02235 0.96050 1.60132 1.00974 1.08946 1.60035 1.21755 0.88133 0.99262 0.98335 1.21381 0.83245 0.84636 0.82638 1.90641 1.77102 1.37197 1.41854 1.46185 1.05757 1.37549 1.46674 1.18482 0.88445 0.88838 0.89625 1.21655 0.90494 1.19249 1.27820 0.89853 1.26069 1.05002 0.94410 0.94189 1.70148 1.34369 1.23038 1.29424 0.85116 0.77219 0.78570 0.78340 1.17602 1.20439 1.20493 0.88634 0.92654 0.94340 0.86033 0.85114 0.83356 0.83527 0.92047 0.92007 0.90564 0.83291 0.86976 0.89933 0.75754 0.99599 0.99809 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.81 113.37 1.23 1.59 16 2 O -0.38 -8.05 8.26 -148.98 -1.23 -9.28 16 3 C 0.14 2.86 1.72 29.85 0.05 2.91 16 4 H 0.09 1.50 6.77 -2.39 -0.02 1.48 16 5 C -0.09 -2.02 4.60 -19.84 -0.09 -2.11 16 6 C -0.07 -1.84 8.98 22.27 0.20 -1.64 16 7 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 8 C -0.11 -2.34 10.05 22.27 0.22 -2.11 16 9 C -0.12 -2.45 9.83 22.29 0.22 -2.23 16 10 C -0.04 -0.93 6.31 22.32 0.14 -0.79 16 11 Cl -0.07 -1.22 27.16 -2.72 -0.07 -1.30 16 12 C 0.09 1.90 2.48 44.92 0.11 2.01 16 13 H 0.10 1.82 7.55 -2.39 -0.02 1.80 16 14 C -0.17 -2.91 8.96 71.98 0.65 -2.26 16 15 N -0.67 -17.96 4.95 -495.59 -2.45 -20.42 16 16 C 0.06 1.56 5.96 85.56 0.51 2.07 16 17 C 0.49 19.94 7.87 87.66 0.69 20.63 16 18 O -0.59 -29.51 16.20 -3.04 -0.05 -29.56 16 19 N -0.71 -30.34 5.55 -466.80 -2.59 -32.93 16 20 C 0.27 15.00 5.43 85.63 0.46 15.47 16 21 C -0.55 -30.44 9.28 25.60 0.24 -30.20 16 22 H 0.08 4.14 7.60 -2.91 -0.02 4.11 16 23 C 0.00 0.15 5.46 84.65 0.46 0.62 16 24 N -0.93 -56.71 13.29 21.44 0.28 -56.43 16 25 Si 0.98 42.59 29.54 68.60 2.03 44.62 16 26 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 27 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 28 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 0.65 8.08 -2.39 -0.02 0.63 16 31 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.12 3.47 7.36 -2.91 -0.02 3.45 16 33 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 36 H 0.06 1.15 7.55 -2.39 -0.02 1.13 16 37 H 0.06 0.99 7.45 -2.39 -0.02 0.97 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 39 H 0.35 10.45 8.17 -89.69 -0.73 9.71 16 40 H 0.11 2.68 8.06 -2.39 -0.02 2.66 16 41 H 0.08 1.80 7.44 -2.38 -0.02 1.78 16 42 H 0.41 14.27 8.32 -92.70 -0.77 13.50 16 43 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 44 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 45 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -72.81 391.59 0.74 -72.08 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -0.49 Total: 32.21 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 5.31 Total: 1.00 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -4.76 Total: -109.78 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -1.28 Total: -38.84 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.07 Total: -1.30 kcal Total: -72.81 0.74 -72.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778247983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.213 kcal (2) G-P(sol) polarization free energy of solvation -72.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds