Wall clock time and date at job start Sat Apr 11 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00028 * 2 1 4 4 H 1.09002 * 109.47243 * 328.49557 * 3 2 1 5 5 C 1.50702 * 109.47428 * 88.49496 * 3 2 1 6 6 C 1.38236 * 120.00277 * 25.00711 * 5 3 2 7 7 C 1.38223 * 120.01218 * 180.02562 * 6 5 3 8 8 C 1.38257 * 120.02818 * 359.97438 * 7 6 5 9 9 C 1.38201 * 120.00982 * 359.97438 * 8 7 6 10 10 C 1.38327 * 120.00879 * 204.72784 * 5 3 2 11 11 Cl 1.73600 * 120.01327 * 359.97438 * 10 5 3 12 12 C 1.52998 * 109.47394 * 208.49993 * 3 2 1 13 13 H 1.08998 * 109.47318 * 180.58302 * 12 3 2 14 14 C 1.52996 * 109.47139 * 60.58266 * 12 3 2 15 15 N 1.46896 * 109.46891 * 300.58661 * 12 3 2 16 16 C 1.46905 * 110.99852 * 205.00088 * 15 12 3 17 17 C 1.50708 * 109.46907 * 180.02562 * 16 15 12 18 18 O 1.21275 * 120.00175 * 359.71796 * 17 16 15 19 19 N 1.34778 * 119.99665 * 180.02562 * 17 16 15 20 20 C 1.46502 * 119.99938 * 179.97438 * 19 17 16 21 21 C 1.50695 * 109.47108 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00206 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00154 * 180.02562 * 21 20 19 24 24 N 1.31521 * 119.99783 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00265 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46912 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46783 * 120.00191 * 25 23 21 28 28 H 1.48504 * 109.47002 * 239.99949 * 25 23 21 29 29 H 1.08997 * 109.47105 * 55.67004 * 1 2 3 30 30 H 1.08997 * 109.47068 * 175.67021 * 1 2 3 31 31 H 1.09001 * 109.47287 * 295.66695 * 1 2 3 32 32 H 1.08004 * 119.99309 * 359.97438 * 6 5 3 33 33 H 1.08001 * 119.98222 * 179.97438 * 7 6 5 34 34 H 1.07995 * 119.99743 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.00026 * 180.02562 * 9 8 7 36 36 H 1.09007 * 109.47321 * 182.71562 * 14 12 3 37 37 H 1.09000 * 109.47390 * 302.71711 * 14 12 3 38 38 H 1.09003 * 109.47297 * 62.71610 * 14 12 3 39 39 H 1.00899 * 111.00156 * 328.94707 * 15 12 3 40 40 H 1.08992 * 109.47383 * 59.99741 * 16 15 12 41 41 H 1.09005 * 109.47023 * 299.99291 * 16 15 12 42 42 H 0.97001 * 120.00231 * 359.97438 * 19 17 16 43 43 H 1.08997 * 109.46973 * 300.00110 * 20 19 17 44 44 H 1.09000 * 109.46768 * 60.00120 * 20 19 17 45 45 H 0.96998 * 119.99975 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3576 1.9937 -0.5370 5 6 2.1805 1.7795 1.4203 6 6 2.2960 0.8607 2.4466 7 6 2.4517 1.2954 3.7495 8 6 2.4924 2.6492 4.0269 9 6 2.3781 3.5687 3.0016 10 6 2.2270 3.1342 1.6966 11 17 2.0899 4.2885 0.4073 12 6 3.3758 1.2557 -0.6883 13 1 3.8236 2.2494 -0.6791 14 6 3.2012 0.7884 -2.1346 15 7 4.2508 0.3175 0.0272 16 6 5.6657 0.6511 -0.1850 17 6 6.5308 -0.3311 0.5620 18 8 6.0192 -1.2182 1.2116 19 7 7.8731 -0.2199 0.5131 20 6 8.7142 -1.1743 1.2396 21 6 10.1655 -0.8322 1.0219 22 1 10.4346 0.0121 0.4045 23 6 11.1500 -1.5969 1.6110 24 7 10.8224 -2.6254 2.3625 25 14 12.9491 -1.1732 1.3406 26 1 13.0500 0.0195 0.4617 27 1 13.5905 -0.8802 2.6475 28 1 13.6370 -2.3218 0.6981 29 1 -0.3633 0.5795 -0.8486 30 1 -0.3633 -1.0247 -0.0776 31 1 -0.3634 0.4451 0.9263 32 1 2.2639 -0.1970 2.2305 33 1 2.5415 0.5771 4.5510 34 1 2.6136 2.9883 5.0451 35 1 2.4104 4.6262 3.2184 36 1 4.1784 0.7067 -2.6106 37 1 2.7094 -0.1843 -2.1454 38 1 2.5913 1.5099 -2.6785 39 1 4.0285 0.2942 1.0111 40 1 5.8602 1.6591 0.1813 41 1 5.8952 0.6007 -1.2494 42 1 8.2823 0.4921 -0.0031 43 1 8.4844 -1.1243 2.3039 44 1 8.5199 -2.1823 0.8729 45 1 11.5150 -3.1636 2.7766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778247986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:40 Heat of formation + Delta-G solvation = -88.008050 kcal Electronic energy + Delta-G solvation = -27452.937919 eV Core-core repulsion = 23495.202320 eV Total energy + Delta-G solvation = -3957.735598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.21374 -40.39652 -38.88439 -37.49644 -36.98054 -36.05756 -34.33501 -33.05489 -31.89439 -31.52782 -29.59270 -28.10528 -27.07254 -26.37125 -24.35816 -23.66271 -22.80758 -21.39225 -21.30852 -19.05799 -18.41627 -17.93728 -17.69186 -17.08391 -16.90014 -16.81765 -16.43138 -15.99934 -15.87043 -15.62199 -15.28591 -14.97989 -14.86506 -14.61551 -14.51994 -14.18674 -14.05771 -13.89040 -13.36774 -13.21627 -13.02466 -12.90680 -12.76510 -12.72585 -12.64004 -12.53071 -12.37276 -12.21749 -12.01955 -11.85207 -11.79344 -11.45177 -10.80976 -10.71954 -10.66235 -9.94360 -9.81604 -9.72507 -9.35784 -8.28599 -6.45160 0.07238 0.21831 1.04862 1.43343 1.44600 1.58113 1.79437 2.28855 2.48182 2.57473 2.72145 3.06195 3.33569 3.46982 3.80727 3.86465 3.95030 4.02885 4.15631 4.28924 4.32852 4.35585 4.44051 4.46702 4.51093 4.56972 4.60766 4.68089 4.87216 4.89670 4.92251 5.02891 5.12336 5.16467 5.25307 5.31424 5.44816 5.46930 5.49833 5.69580 5.78401 5.85600 5.95564 6.23141 6.37615 6.66189 6.94835 7.24248 7.52419 8.83888 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.002602 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.723701 B =10760.317765 C =11150.896472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.376 6.376 3 C 0.132 3.868 4 H 0.094 0.906 5 C -0.122 4.122 6 C -0.100 4.100 7 C -0.123 4.123 8 C -0.104 4.104 9 C -0.115 4.115 10 C -0.039 4.039 11 Cl -0.063 7.063 12 C 0.093 3.907 13 H 0.067 0.933 14 C -0.135 4.135 15 N -0.675 5.675 16 C 0.052 3.948 17 C 0.494 3.506 18 O -0.588 6.588 19 N -0.709 5.709 20 C 0.268 3.732 21 C -0.555 4.555 22 H 0.084 0.916 23 C 0.003 3.997 24 N -0.931 5.931 25 Si 0.985 3.015 26 H -0.253 1.253 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.128 0.872 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.344 0.656 40 H 0.076 0.924 41 H 0.122 0.878 42 H 0.408 0.592 43 H -0.014 1.014 44 H -0.015 1.015 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.378 16.999 -4.441 28.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.295 6.295 3 C 0.073 3.927 4 H 0.112 0.888 5 C -0.124 4.124 6 C -0.118 4.118 7 C -0.141 4.141 8 C -0.122 4.122 9 C -0.133 4.133 10 C -0.066 4.066 11 Cl -0.034 7.034 12 C -0.016 4.016 13 H 0.084 0.916 14 C -0.193 4.193 15 N -0.311 5.311 16 C -0.080 4.080 17 C 0.281 3.719 18 O -0.469 6.469 19 N -0.360 5.360 20 C 0.145 3.855 21 C -0.592 4.592 22 H 0.102 0.898 23 C -0.197 4.197 24 N -0.570 5.570 25 Si 0.808 3.192 26 H -0.176 1.176 27 H -0.204 1.204 28 H -0.205 1.205 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.058 0.942 32 H 0.146 0.854 33 H 0.158 0.842 34 H 0.175 0.825 35 H 0.171 0.829 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.166 0.834 40 H 0.094 0.906 41 H 0.139 0.861 42 H 0.243 0.757 43 H 0.004 0.996 44 H 0.003 0.997 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.591 15.693 -4.499 27.872 hybrid contribution 0.957 0.809 0.615 1.396 sum -21.634 16.502 -3.884 27.485 Atomic orbital electron populations 1.22985 0.80119 1.03727 1.00524 1.88064 1.20641 1.26179 1.94567 1.21189 0.95287 0.85776 0.90427 0.88787 1.20369 1.02601 0.91791 0.97589 1.21121 0.98146 1.00058 0.92465 1.21598 0.98507 0.97060 0.96909 1.21502 0.97930 0.92350 1.00459 1.21339 0.99983 1.01798 0.90224 1.20884 1.05969 0.89398 0.90335 1.98361 1.96313 1.58845 1.49848 1.21726 0.90261 0.94367 0.95230 0.91552 1.21739 1.02330 1.02081 0.93153 1.60199 1.00935 1.52426 1.17522 1.21853 0.88510 0.95586 1.02035 1.21338 0.83071 0.86092 0.81436 1.90634 1.74337 1.37351 1.44568 1.46175 1.05692 1.32933 1.51167 1.18512 0.89491 0.87402 0.90073 1.21651 0.90409 1.15062 1.32122 0.89806 1.26080 1.05189 0.94313 0.94092 1.70152 1.35529 1.18632 1.32654 0.85105 0.77141 0.78692 0.78237 1.17596 1.20425 1.20473 0.92540 0.88666 0.94155 0.85445 0.84160 0.82502 0.82894 0.92210 0.92420 0.90605 0.83409 0.90599 0.86066 0.75670 0.99558 0.99673 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.85 113.37 1.23 1.60 16 2 O -0.38 -8.65 8.35 -148.98 -1.24 -9.90 16 3 C 0.13 2.72 1.60 29.85 0.05 2.77 16 4 H 0.09 1.64 6.74 -2.39 -0.02 1.62 16 5 C -0.12 -2.62 4.47 -19.84 -0.09 -2.71 16 6 C -0.10 -2.33 7.65 22.27 0.17 -2.16 16 7 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 8 C -0.10 -1.74 10.05 22.27 0.22 -1.51 16 9 C -0.11 -1.93 9.83 22.29 0.22 -1.71 16 10 C -0.04 -0.75 6.31 22.32 0.14 -0.61 16 11 Cl -0.06 -1.03 27.13 -2.72 -0.07 -1.11 16 12 C 0.09 2.07 2.47 44.91 0.11 2.18 16 13 H 0.07 1.34 7.52 -2.39 -0.02 1.32 16 14 C -0.14 -2.68 9.33 71.98 0.67 -2.01 16 15 N -0.68 -20.04 5.79 -495.58 -2.87 -22.91 16 16 C 0.05 1.53 5.97 85.56 0.51 2.04 16 17 C 0.49 20.63 7.87 87.66 0.69 21.32 16 18 O -0.59 -30.42 16.20 -3.01 -0.05 -30.47 16 19 N -0.71 -30.76 5.55 -466.79 -2.59 -33.35 16 20 C 0.27 15.05 5.43 85.63 0.46 15.51 16 21 C -0.55 -30.55 9.28 25.60 0.24 -30.31 16 22 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 23 C 0.00 0.15 5.46 84.65 0.46 0.62 16 24 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 25 Si 0.99 42.63 29.54 68.60 2.03 44.66 16 26 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 28 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 29 H 0.06 0.72 7.99 -2.39 -0.02 0.70 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.13 3.38 7.24 -2.91 -0.02 3.36 16 33 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 35 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.06 1.16 7.40 -2.38 -0.02 1.15 16 37 H 0.06 1.33 7.62 -2.39 -0.02 1.32 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.34 11.21 5.43 -89.69 -0.49 10.73 16 40 H 0.08 1.87 8.05 -2.39 -0.02 1.85 16 41 H 0.12 2.96 7.39 -2.38 -0.02 2.95 16 42 H 0.41 14.51 8.32 -92.71 -0.77 13.74 16 43 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 44 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 45 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -74.44 388.25 0.55 -73.88 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -0.24 Total: 32.91 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 5.31 Total: 2.77 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -5.17 Total: -112.75 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -1.29 Total: -40.37 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.07 Total: -1.11 kcal Total: -74.44 0.55 -73.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778247986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.126 kcal (2) G-P(sol) polarization free energy of solvation -74.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds