Wall clock time and date at job start Sat Apr 11 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47359 * 2 1 4 4 O 1.45196 * 109.47114 * 239.99666 * 2 1 3 5 5 C 1.34863 * 117.00023 * 90.82520 * 4 2 1 6 6 O 1.21596 * 120.00105 * 5.05763 * 5 4 2 7 7 C 1.46720 * 120.00045 * 185.06072 * 5 4 2 8 8 C 1.36217 * 125.44866 * 185.30707 * 7 5 4 9 9 C 1.41657 * 107.74326 * 180.27484 * 8 7 5 10 10 C 1.40040 * 133.33774 * 179.76192 * 9 8 7 11 11 C 1.36568 * 119.82746 * 180.02562 * 10 9 8 12 12 C 1.38865 * 120.60529 * 359.95238 * 11 10 9 13 13 C 1.37840 * 120.63474 * 0.02562 * 12 11 10 14 14 C 1.39093 * 119.81553 * 0.02562 * 13 12 11 15 15 N 1.37824 * 133.14543 * 180.02562 * 14 13 12 16 16 C 1.36870 * 125.62543 * 359.97438 * 15 14 13 17 17 H 1.07997 * 120.00384 * 223.47541 * 16 15 14 18 18 C 1.39017 * 119.99718 * 43.47836 * 16 15 14 19 19 N 1.31347 * 119.99921 * 199.84178 * 18 16 15 20 20 Si 1.86798 * 120.00404 * 19.84059 * 18 16 15 21 21 H 1.48497 * 109.47413 * 264.77425 * 20 18 16 22 22 H 1.48504 * 109.47190 * 24.77011 * 20 18 16 23 23 H 1.48499 * 109.47443 * 144.76880 * 20 18 16 24 24 C 1.50704 * 109.47219 * 119.99692 * 2 1 3 25 25 N 1.30525 * 126.34308 * 77.25210 * 24 2 1 26 26 N 1.28601 * 109.66839 * 179.97438 * 25 24 2 27 27 C 1.30518 * 109.67638 * 0.02562 * 26 25 24 28 28 N 1.35490 * 126.35052 * 256.94268 * 24 2 1 29 29 C 1.46508 * 126.97504 * 0.03669 * 28 24 2 30 30 H 1.09002 * 109.47196 * 184.74868 * 1 2 3 31 31 H 1.09004 * 109.47118 * 304.74731 * 1 2 3 32 32 H 1.08997 * 109.47359 * 64.74814 * 1 2 3 33 33 H 1.07999 * 126.12688 * 0.03091 * 8 7 5 34 34 H 1.08001 * 120.08984 * 359.96523 * 10 9 8 35 35 H 1.08001 * 119.69920 * 179.97438 * 11 10 9 36 36 H 1.07995 * 119.68366 * 180.02562 * 12 11 10 37 37 H 1.08003 * 120.09502 * 179.97438 * 13 12 11 38 38 H 0.96994 * 119.99884 * 174.98971 * 19 18 16 39 39 H 1.07995 * 126.34941 * 180.02562 * 27 26 25 40 40 H 1.08998 * 109.47287 * 90.00193 * 29 28 24 41 41 H 1.08996 * 109.46840 * 209.99925 * 29 28 24 42 42 H 1.08995 * 109.47145 * 330.00273 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 -1.1855 5 6 2.2343 0.0702 -2.2812 6 8 2.1161 1.2789 -2.2208 7 6 2.6167 -0.5671 -3.5462 8 6 2.9638 0.0892 -4.6882 9 6 3.2544 -0.8850 -5.6747 10 6 3.6532 -0.8066 -7.0148 11 6 3.8620 -1.9514 -7.7296 12 6 3.6834 -3.1957 -7.1395 13 6 3.2917 -3.2986 -5.8219 14 6 3.0720 -2.1467 -5.0738 15 7 2.6852 -1.9299 -3.7689 16 6 2.4093 -2.9032 -2.8469 17 1 1.5472 -2.8085 -2.2033 18 6 3.2388 -4.0135 -2.7390 19 7 2.7977 -5.1094 -2.1648 20 14 4.9805 -3.9472 -3.4108 21 1 5.0033 -4.5117 -4.7841 22 1 5.4434 -2.5366 -3.4479 23 1 5.8796 -4.7402 -2.5345 24 6 2.0323 -0.7104 1.2305 25 7 2.0714 -2.0017 1.4164 26 7 2.5594 -2.2571 2.5785 27 6 2.8532 -1.1404 3.1870 28 7 2.5325 -0.1272 2.3465 29 6 2.6906 1.3079 2.5956 30 1 -0.3634 -1.0241 0.0851 31 1 -0.3633 0.5857 0.8444 32 1 -0.3634 0.4384 -0.9294 33 1 3.0058 1.1604 -4.8194 34 1 3.7944 0.1568 -7.4823 35 1 4.1691 -1.8885 -8.7631 36 1 3.8530 -4.0914 -7.7185 37 1 3.1550 -4.2708 -5.3719 38 1 3.3495 -5.9070 -2.1539 39 1 3.2781 -1.0424 4.1749 40 1 1.7861 1.6975 3.0627 41 1 3.5405 1.4701 3.2584 42 1 2.8627 1.8238 1.6510 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805444805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:44 Heat of formation + Delta-G solvation = 55.544361 kcal Electronic energy + Delta-G solvation = -29672.618309 eV Core-core repulsion = 25620.000116 eV Total energy + Delta-G solvation = -4052.618193 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.22412 -42.53323 -41.21601 -37.97930 -37.72079 -36.13635 -35.39889 -33.93694 -33.13513 -30.95040 -30.65735 -30.06448 -28.51976 -26.76380 -26.20898 -24.83537 -23.44710 -22.82210 -22.41246 -21.50998 -20.98305 -20.12355 -18.96249 -18.50882 -17.73535 -17.53410 -17.34401 -17.04258 -16.76638 -16.25150 -16.01861 -15.89596 -15.56307 -15.03995 -14.90531 -14.69164 -14.46534 -14.37660 -14.18950 -14.06112 -13.76701 -13.69548 -13.32688 -13.16338 -12.80922 -12.70250 -12.49869 -12.40386 -12.30732 -12.08188 -11.96143 -11.83997 -11.51994 -11.35057 -11.29705 -11.17135 -10.46435 -10.44481 -9.09454 -8.80435 -8.68047 -6.46819 -0.23289 0.58755 0.85928 0.98113 1.12780 1.18536 1.21466 1.27951 1.72906 1.94055 1.97828 2.12082 2.39334 2.75984 2.97691 3.13690 3.50472 3.59289 3.78387 3.80579 3.85699 4.00737 4.28984 4.33366 4.35374 4.35773 4.46059 4.53702 4.56418 4.62423 4.64827 4.74720 4.78371 4.92789 4.99837 5.05049 5.09173 5.20201 5.25956 5.39773 5.67955 5.78847 5.83890 5.86488 5.95180 6.11828 6.40060 6.60682 6.84688 7.15881 7.67826 8.29431 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.004265 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.373567 B = 6562.721891 C = 7817.856221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.169 3.831 3 H 0.121 0.879 4 O -0.331 6.331 5 C 0.547 3.453 6 O -0.521 6.521 7 C -0.047 4.047 8 C -0.137 4.137 9 C -0.144 4.144 10 C -0.068 4.068 11 C -0.150 4.150 12 C -0.107 4.107 13 C -0.143 4.143 14 C 0.041 3.959 15 N -0.282 5.282 16 C -0.346 4.346 17 H 0.094 0.906 18 C 0.056 3.944 19 N -0.856 5.856 20 Si 0.913 3.087 21 H -0.217 1.217 22 H -0.280 1.280 23 H -0.281 1.281 24 C 0.158 3.842 25 N -0.310 5.310 26 N -0.357 5.357 27 C 0.174 3.826 28 N -0.465 5.465 29 C 0.057 3.943 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.169 0.831 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.147 0.853 37 H 0.101 0.899 38 H 0.290 0.710 39 H 0.276 0.724 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.853 14.190 3.701 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.112 3.888 3 H 0.138 0.862 4 O -0.246 6.246 5 C 0.395 3.605 6 O -0.413 6.413 7 C -0.158 4.158 8 C -0.164 4.164 9 C -0.149 4.149 10 C -0.087 4.087 11 C -0.169 4.169 12 C -0.127 4.127 13 C -0.163 4.163 14 C -0.073 4.073 15 N 0.053 4.947 16 C -0.474 4.474 17 H 0.111 0.889 18 C -0.155 4.155 19 N -0.487 5.487 20 Si 0.736 3.264 21 H -0.140 1.140 22 H -0.205 1.205 23 H -0.207 1.207 24 C -0.111 4.111 25 N -0.150 5.150 26 N -0.196 5.196 27 C -0.114 4.114 28 N -0.157 5.157 29 C -0.083 4.083 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.093 0.907 33 H 0.186 0.814 34 H 0.170 0.830 35 H 0.177 0.823 36 H 0.165 0.835 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.291 0.709 40 H 0.130 0.870 41 H 0.147 0.853 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.602 12.619 3.998 13.334 hybrid contribution 0.617 0.632 0.879 1.246 sum 2.218 13.251 4.876 14.293 Atomic orbital electron populations 1.22112 0.90505 1.03557 1.04740 1.20826 0.96023 0.94811 0.77166 0.86168 1.87099 1.76519 1.40893 1.20077 1.19982 0.72795 0.84691 0.83040 1.90737 1.51459 1.13991 1.85080 1.19653 1.17502 0.84469 0.94191 1.20796 1.06154 0.99310 0.90135 1.18350 1.09178 0.91128 0.96207 1.20663 0.97400 1.00233 0.90380 1.20922 1.03628 0.91099 1.01233 1.21145 0.99418 0.99635 0.92527 1.20351 1.04976 0.95310 0.95659 1.18930 1.07042 0.96873 0.84494 1.40396 1.43704 1.03633 1.06924 1.19061 1.12497 0.99010 1.16809 0.88877 1.25899 1.01125 0.94015 0.94429 1.69691 1.39087 1.01299 1.38602 0.86348 0.79916 0.79129 0.80969 1.14039 1.20521 1.20697 1.24301 1.03836 0.90791 0.92171 1.74412 1.17233 1.12861 1.10515 1.74240 1.17331 1.26090 1.01929 1.27466 1.01340 0.82186 1.00371 1.46433 1.45516 1.11411 1.12348 1.22671 1.06983 0.73218 1.05436 0.92719 0.87125 0.90653 0.81395 0.83016 0.82300 0.83513 0.88048 0.89897 0.70909 0.86957 0.85311 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 9.54 71.98 0.69 -3.73 16 2 C 0.17 5.78 3.02 29.85 0.09 5.87 16 3 H 0.12 3.43 5.85 -2.39 -0.01 3.41 16 4 O -0.33 -15.16 7.79 -57.77 -0.45 -15.61 16 5 C 0.55 24.61 7.88 70.04 0.55 25.17 16 6 O -0.52 -21.55 16.07 19.52 0.31 -21.24 16 7 C -0.05 -2.26 6.76 39.88 0.27 -1.99 16 8 C -0.14 -5.72 10.55 22.64 0.24 -5.48 16 9 C -0.14 -5.99 6.16 -21.34 -0.13 -6.12 16 10 C -0.07 -2.19 10.06 22.32 0.22 -1.96 16 11 C -0.15 -4.36 9.97 22.03 0.22 -4.15 16 12 C -0.11 -3.63 10.02 22.33 0.22 -3.41 16 13 C -0.14 -6.27 6.85 22.38 0.15 -6.12 16 14 C 0.04 1.95 5.17 39.07 0.20 2.15 16 15 N -0.28 -14.90 2.39 -331.41 -0.79 -15.70 16 16 C -0.35 -20.25 8.99 84.09 0.76 -19.50 16 17 H 0.09 6.01 7.28 -2.91 -0.02 5.99 16 18 C 0.06 3.23 4.89 84.95 0.42 3.65 16 19 N -0.86 -50.80 13.95 21.67 0.30 -50.50 16 20 Si 0.91 45.40 24.43 68.60 1.68 47.08 16 21 H -0.22 -9.65 5.68 99.48 0.56 -9.08 16 22 H -0.28 -14.79 7.11 99.48 0.71 -14.08 16 23 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 24 C 0.16 5.56 6.93 137.98 0.96 6.52 16 25 N -0.31 -13.96 12.21 -50.15 -0.61 -14.57 16 26 N -0.36 -13.92 12.21 -59.99 -0.73 -14.65 16 27 C 0.17 4.27 12.74 180.11 2.30 6.57 16 28 N -0.47 -10.95 3.15 -542.07 -1.71 -12.66 16 29 C 0.06 0.58 11.01 127.77 1.41 1.99 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.17 5.86 8.06 -2.91 -0.02 5.84 16 34 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 35 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 36 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 37 H 0.10 4.75 5.98 -2.91 -0.02 4.73 16 38 H 0.29 15.81 8.31 -92.71 -0.77 15.04 16 39 H 0.28 2.98 8.06 -2.91 -0.02 2.96 16 40 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.09 1.00 7.06 -2.39 -0.02 0.98 16 Total: -1.00 -85.06 358.13 7.48 -77.58 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.92 Total: 20.83 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 8.56 Total: -0.55 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -3.54 Total: -108.08 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.14 Total: -36.85 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.68 Total: 47.08 kcal Total: -85.06 7.48 -77.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805444805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.123 kcal (2) G-P(sol) polarization free energy of solvation -85.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds