Wall clock time and date at job start Sat Apr 11 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46531 * 2 1 4 4 O 1.45198 * 109.47040 * 240.00525 * 2 1 3 5 5 C 1.34865 * 117.00251 * 85.01320 * 4 2 1 6 6 O 1.21586 * 120.00086 * 3.47903 * 5 4 2 7 7 C 1.46716 * 119.99964 * 183.48192 * 5 4 2 8 8 C 1.36212 * 125.45104 * 185.13656 * 7 5 4 9 9 C 1.41650 * 107.74769 * 180.27491 * 8 7 5 10 10 C 1.40038 * 133.34499 * 179.75891 * 9 8 7 11 11 C 1.36570 * 119.83489 * 180.02562 * 10 9 8 12 12 C 1.38862 * 120.60096 * 359.94946 * 11 10 9 13 13 C 1.37847 * 120.63655 * 0.03080 * 12 11 10 14 14 C 1.39085 * 119.81497 * 359.97438 * 13 12 11 15 15 N 1.37827 * 133.14928 * 180.02562 * 14 13 12 16 16 C 1.36867 * 125.62100 * 0.02562 * 15 14 13 17 17 H 1.08000 * 120.00527 * 139.05021 * 16 15 14 18 18 C 1.39024 * 119.99972 * 319.04986 * 16 15 14 19 19 N 1.31347 * 119.99881 * 336.57503 * 18 16 15 20 20 Si 1.86803 * 120.00179 * 156.57960 * 18 16 15 21 21 H 1.48505 * 109.47031 * 184.99634 * 20 18 16 22 22 H 1.48503 * 109.46789 * 304.99560 * 20 18 16 23 23 H 1.48500 * 109.47236 * 64.99382 * 20 18 16 24 24 C 1.50700 * 109.47172 * 119.99764 * 2 1 3 25 25 N 1.30828 * 125.95465 * 75.14142 * 24 2 1 26 26 C 1.33243 * 109.82453 * 179.86360 * 25 24 2 27 27 N 1.30713 * 108.94741 * 0.40433 * 26 25 24 28 28 N 1.34427 * 125.96477 * 255.44836 * 24 2 1 29 29 C 1.46497 * 126.82139 * 0.02562 * 28 24 2 30 30 H 1.09009 * 109.47021 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47512 * 299.99698 * 1 2 3 32 32 H 1.08999 * 109.47526 * 59.99952 * 1 2 3 33 33 H 1.08005 * 126.12487 * 0.02777 * 8 7 5 34 34 H 1.08001 * 120.08311 * 359.96343 * 10 9 8 35 35 H 1.08000 * 119.69984 * 179.97438 * 11 10 9 36 36 H 1.07998 * 119.68277 * 180.02562 * 12 11 10 37 37 H 1.07998 * 120.08698 * 179.97438 * 13 12 11 38 38 H 0.96996 * 119.99959 * 353.41615 * 19 18 16 39 39 H 1.08004 * 125.52753 * 180.12922 * 26 25 24 40 40 H 1.09002 * 109.47357 * 89.99930 * 29 28 24 41 41 H 1.09002 * 109.47161 * 209.99904 * 29 28 24 42 42 H 1.09007 * 109.47557 * 330.00399 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.1196 0.0464 -2.3142 6 8 1.8760 1.2374 -2.2923 7 6 2.5284 -0.5959 -3.5684 8 6 2.7658 0.0481 -4.7449 9 6 3.1289 -0.9275 -5.7056 10 6 3.4740 -0.8600 -7.0611 11 6 3.7829 -2.0033 -7.7413 12 6 3.7593 -3.2351 -7.1008 13 6 3.4232 -3.3271 -5.7671 14 6 3.1046 -2.1767 -5.0533 15 7 2.7385 -1.9510 -3.7439 16 6 2.5995 -2.9109 -2.7782 17 1 2.9548 -2.7239 -1.7756 18 6 2.0009 -4.1269 -3.0879 19 7 1.1773 -4.2126 -4.1074 20 14 2.3679 -5.6388 -2.0540 21 1 1.7070 -6.8237 -2.6578 22 1 3.8353 -5.8613 -2.0060 23 1 1.8530 -5.4332 -0.6763 24 6 2.0323 -0.7104 1.2305 25 7 2.0323 -2.0042 1.4243 26 6 2.5512 -2.2820 2.6197 27 7 2.8821 -1.1633 3.2092 28 7 2.5532 -0.1249 2.3227 29 6 2.7397 1.3111 2.5446 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.6871 1.1116 -4.9159 34 1 3.4948 0.0936 -7.5675 35 1 4.0484 -1.9487 -8.7867 36 1 4.0067 -4.1298 -7.6529 37 1 3.4073 -4.2899 -5.2780 38 1 0.9120 -3.4113 -4.5853 39 1 2.6741 -3.2710 3.0361 40 1 1.8482 1.7248 3.0161 41 1 3.6008 1.4697 3.1938 42 1 2.9088 1.8076 1.5890 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835609916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:49 Heat of formation + Delta-G solvation = 70.015564 kcal Electronic energy + Delta-G solvation = -29595.706613 eV Core-core repulsion = 25543.715939 eV Total energy + Delta-G solvation = -4051.990674 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.17656 -40.73638 -39.57823 -36.37438 -36.08367 -34.25470 -33.77931 -32.77058 -30.68259 -30.08007 -29.13256 -28.25097 -27.43844 -24.88168 -24.66904 -23.34054 -22.05967 -21.10716 -20.73902 -20.00084 -19.50618 -18.42965 -17.35979 -17.15976 -16.18358 -16.12589 -15.64846 -15.51308 -15.10587 -14.81134 -14.26791 -14.21506 -13.90446 -13.51732 -13.39763 -13.33853 -13.15959 -13.03465 -12.84646 -12.68360 -12.22027 -12.18494 -11.95053 -11.71698 -11.29021 -11.07996 -10.94061 -10.57485 -10.52523 -10.37116 -10.31339 -10.18750 -9.94278 -9.92008 -9.77228 -9.62056 -9.12755 -8.84565 -7.53634 -7.12947 -6.82156 -4.50851 1.42503 1.48743 2.06831 2.58359 2.71146 2.85007 3.19315 3.21380 3.21613 3.39662 3.85538 3.93796 3.99191 4.32785 4.37634 4.61438 4.67560 4.82896 4.87434 4.87665 4.93755 5.15291 5.28800 5.31601 5.65675 5.71114 5.75886 5.81514 5.98343 6.13825 6.20165 6.23772 6.35469 6.39544 6.46624 6.59639 6.68293 6.76923 6.86467 6.93482 7.31255 7.39313 7.46110 7.70419 7.76373 7.80911 8.08953 8.12868 8.32514 8.73979 9.05113 10.10211 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.004340 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.877964 B = 6450.706365 C = 8047.836208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.168 3.832 3 H 0.099 0.901 4 O -0.308 6.308 5 C 0.547 3.453 6 O -0.528 6.528 7 C -0.028 4.028 8 C -0.164 4.164 9 C -0.125 4.125 10 C -0.084 4.084 11 C -0.154 4.154 12 C -0.141 4.141 13 C -0.071 4.071 14 C 0.055 3.945 15 N -0.238 5.238 16 C -0.410 4.410 17 H 0.118 0.882 18 C 0.031 3.969 19 N -0.817 5.817 20 Si 1.072 2.928 21 H -0.274 1.274 22 H -0.277 1.277 23 H -0.267 1.267 24 C 0.281 3.719 25 N -0.503 5.503 26 C 0.199 3.801 27 N -0.320 5.320 28 N -0.377 5.377 29 C 0.091 3.909 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.288 0.712 39 H 0.220 0.780 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.184 5.940 7.744 9.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.110 3.890 3 H 0.117 0.883 4 O -0.223 6.223 5 C 0.396 3.604 6 O -0.419 6.419 7 C -0.141 4.141 8 C -0.192 4.192 9 C -0.130 4.130 10 C -0.102 4.102 11 C -0.173 4.173 12 C -0.162 4.162 13 C -0.090 4.090 14 C -0.060 4.060 15 N 0.100 4.900 16 C -0.538 4.538 17 H 0.136 0.864 18 C -0.185 4.185 19 N -0.442 5.442 20 Si 0.895 3.105 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.192 1.192 24 C 0.004 3.996 25 N -0.230 5.230 26 C -0.103 4.103 27 N -0.148 5.148 28 N -0.169 5.169 29 C -0.051 4.051 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.152 0.848 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.100 0.900 39 H 0.236 0.764 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.944 4.319 8.703 9.762 hybrid contribution 0.173 1.978 -0.049 1.986 sum 1.118 6.297 8.654 10.761 Atomic orbital electron populations 1.22161 0.91799 1.04748 1.03275 1.20589 0.95246 0.94182 0.79013 0.88331 1.87069 1.76981 1.41315 1.16943 1.20113 0.73374 0.84297 0.82665 1.90777 1.49914 1.15536 1.85643 1.19086 1.17165 0.85796 0.92094 1.20271 1.10728 0.98000 0.90169 1.17893 1.08496 0.92516 0.94073 1.20096 1.00289 0.97524 0.92334 1.20341 1.05333 0.92778 0.98879 1.20593 1.04599 0.97038 0.93921 1.20199 0.99114 0.96286 0.93437 1.18351 1.06637 0.95097 0.85904 1.40350 1.38732 1.03994 1.06931 1.21023 1.43314 0.95598 0.93853 0.86445 1.26891 0.91960 1.01558 0.98105 1.70626 1.22266 1.34704 1.16613 0.83475 0.77245 0.73813 0.76009 1.19844 1.20211 1.19166 1.23766 0.95740 0.89562 0.90562 1.70625 1.22834 1.11961 1.17574 1.26091 0.96066 0.98435 0.89737 1.78032 1.25110 0.95595 1.16104 1.50282 1.46187 1.07885 1.12536 1.22024 1.04148 0.74696 1.04244 0.89966 0.91054 0.90287 0.84754 0.87452 0.87530 0.87165 0.86368 0.90015 0.76370 0.89934 0.88649 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.46 37.16 0.35 -1.94 16 2 C 0.17 2.70 2.91 -27.88 -0.08 2.62 16 3 H 0.10 1.39 5.95 -51.93 -0.31 1.08 16 4 O -0.31 -6.39 7.65 -40.94 -0.31 -6.71 16 5 C 0.55 11.97 7.81 34.15 0.27 12.24 16 6 O -0.53 -11.20 16.17 -19.33 -0.31 -11.51 16 7 C -0.03 -0.68 6.76 -82.27 -0.56 -1.24 16 8 C -0.16 -3.69 10.55 -39.01 -0.41 -4.11 16 9 C -0.13 -2.85 6.16 -106.90 -0.66 -3.51 16 10 C -0.08 -1.63 10.06 -39.51 -0.40 -2.03 16 11 C -0.15 -2.84 9.97 -39.95 -0.40 -3.24 16 12 C -0.14 -2.77 10.02 -39.49 -0.40 -3.17 16 13 C -0.07 -1.63 8.75 -39.41 -0.34 -1.97 16 14 C 0.06 1.35 5.56 -83.83 -0.47 0.88 16 15 N -0.24 -6.04 2.56 -56.10 -0.14 -6.19 16 16 C -0.41 -10.48 8.66 -15.01 -0.13 -10.61 16 17 H 0.12 3.06 6.85 -52.49 -0.36 2.70 16 18 C 0.03 0.78 4.19 -17.47 -0.07 0.70 16 19 N -0.82 -21.47 12.12 55.50 0.67 -20.79 16 20 Si 1.07 22.03 29.98 -169.99 -5.10 16.94 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 24 C 0.28 4.51 6.88 -155.70 -1.07 3.44 16 25 N -0.50 -8.95 11.19 -11.97 -0.13 -9.08 16 26 C 0.20 2.95 13.03 -91.81 -1.20 1.75 16 27 N -0.32 -4.70 12.70 29.29 0.37 -4.33 16 28 N -0.38 -5.15 4.04 -65.10 -0.26 -5.42 16 29 C 0.09 0.78 11.29 59.85 0.68 1.46 16 30 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.13 2.71 8.06 -52.48 -0.42 2.28 16 34 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 36 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.12 2.80 6.80 -52.49 -0.36 2.44 16 38 H 0.29 7.98 7.39 -40.82 -0.30 7.68 16 39 H 0.22 2.35 8.06 -52.48 -0.42 1.93 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.69 6.97 -51.92 -0.36 0.33 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -31.39 364.75 -9.32 -40.71 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -4.71 Total: 9.59 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -4.89 Total: -8.70 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.50 Total: -45.80 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.63 Total: -18.22 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.10 Total: 16.94 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.39 -9.32 -40.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835609916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.721 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds