Wall clock time and date at job start Sat Apr 11 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46531 * 2 1 4 4 O 1.45198 * 109.47040 * 240.00525 * 2 1 3 5 5 C 1.34865 * 117.00251 * 85.01320 * 4 2 1 6 6 O 1.21586 * 120.00086 * 3.47903 * 5 4 2 7 7 C 1.46716 * 119.99964 * 183.48192 * 5 4 2 8 8 C 1.36212 * 125.45104 * 185.13656 * 7 5 4 9 9 C 1.41650 * 107.74769 * 180.27491 * 8 7 5 10 10 C 1.40038 * 133.34499 * 179.75891 * 9 8 7 11 11 C 1.36570 * 119.83489 * 180.02562 * 10 9 8 12 12 C 1.38862 * 120.60096 * 359.94946 * 11 10 9 13 13 C 1.37847 * 120.63655 * 0.03080 * 12 11 10 14 14 C 1.39085 * 119.81497 * 359.97438 * 13 12 11 15 15 N 1.37827 * 133.14928 * 180.02562 * 14 13 12 16 16 C 1.36867 * 125.62100 * 0.02562 * 15 14 13 17 17 H 1.08000 * 120.00527 * 139.05021 * 16 15 14 18 18 C 1.39024 * 119.99972 * 319.04986 * 16 15 14 19 19 N 1.31347 * 119.99881 * 336.57503 * 18 16 15 20 20 Si 1.86803 * 120.00179 * 156.57960 * 18 16 15 21 21 H 1.48505 * 109.47031 * 184.99634 * 20 18 16 22 22 H 1.48503 * 109.46789 * 304.99560 * 20 18 16 23 23 H 1.48500 * 109.47236 * 64.99382 * 20 18 16 24 24 C 1.50700 * 109.47172 * 119.99764 * 2 1 3 25 25 N 1.30828 * 125.95465 * 75.14142 * 24 2 1 26 26 C 1.33243 * 109.82453 * 179.86360 * 25 24 2 27 27 N 1.30713 * 108.94741 * 0.40433 * 26 25 24 28 28 N 1.34427 * 125.96477 * 255.44836 * 24 2 1 29 29 C 1.46497 * 126.82139 * 0.02562 * 28 24 2 30 30 H 1.09009 * 109.47021 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47512 * 299.99698 * 1 2 3 32 32 H 1.08999 * 109.47526 * 59.99952 * 1 2 3 33 33 H 1.08005 * 126.12487 * 0.02777 * 8 7 5 34 34 H 1.08001 * 120.08311 * 359.96343 * 10 9 8 35 35 H 1.08000 * 119.69984 * 179.97438 * 11 10 9 36 36 H 1.07998 * 119.68277 * 180.02562 * 12 11 10 37 37 H 1.07998 * 120.08698 * 179.97438 * 13 12 11 38 38 H 0.96996 * 119.99959 * 353.41615 * 19 18 16 39 39 H 1.08004 * 125.52753 * 180.12922 * 26 25 24 40 40 H 1.09002 * 109.47357 * 89.99930 * 29 28 24 41 41 H 1.09002 * 109.47161 * 209.99904 * 29 28 24 42 42 H 1.09007 * 109.47557 * 330.00399 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.1196 0.0464 -2.3142 6 8 1.8760 1.2374 -2.2923 7 6 2.5284 -0.5959 -3.5684 8 6 2.7658 0.0481 -4.7449 9 6 3.1289 -0.9275 -5.7056 10 6 3.4740 -0.8600 -7.0611 11 6 3.7829 -2.0033 -7.7413 12 6 3.7593 -3.2351 -7.1008 13 6 3.4232 -3.3271 -5.7671 14 6 3.1046 -2.1767 -5.0533 15 7 2.7385 -1.9510 -3.7439 16 6 2.5995 -2.9109 -2.7782 17 1 2.9548 -2.7239 -1.7756 18 6 2.0009 -4.1269 -3.0879 19 7 1.1773 -4.2126 -4.1074 20 14 2.3679 -5.6388 -2.0540 21 1 1.7070 -6.8237 -2.6578 22 1 3.8353 -5.8613 -2.0060 23 1 1.8530 -5.4332 -0.6763 24 6 2.0323 -0.7104 1.2305 25 7 2.0323 -2.0042 1.4243 26 6 2.5512 -2.2820 2.6197 27 7 2.8821 -1.1633 3.2092 28 7 2.5532 -0.1249 2.3227 29 6 2.7397 1.3111 2.5446 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.6871 1.1116 -4.9159 34 1 3.4948 0.0936 -7.5675 35 1 4.0484 -1.9487 -8.7867 36 1 4.0067 -4.1298 -7.6529 37 1 3.4073 -4.2899 -5.2780 38 1 0.9120 -3.4113 -4.5853 39 1 2.6741 -3.2710 3.0361 40 1 1.8482 1.7248 3.0161 41 1 3.6008 1.4697 3.1938 42 1 2.9088 1.8076 1.5890 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835609916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:48 Heat of formation + Delta-G solvation = 54.769291 kcal Electronic energy + Delta-G solvation = -29596.367741 eV Core-core repulsion = 25543.715939 eV Total energy + Delta-G solvation = -4052.651802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.31904 -42.44356 -41.18674 -37.94295 -37.72425 -35.58113 -35.28594 -34.03115 -32.42605 -31.28094 -30.77046 -29.93245 -28.32888 -26.54262 -26.24950 -24.76734 -23.18950 -22.79055 -22.27014 -21.36313 -21.16241 -20.13438 -18.93070 -18.37585 -17.64444 -17.40712 -17.37229 -16.94506 -16.59784 -16.02819 -15.96105 -15.58415 -15.49076 -14.91752 -14.84408 -14.64535 -14.47822 -14.26548 -14.17397 -13.98013 -13.87234 -13.58862 -13.35199 -12.96598 -12.79853 -12.50313 -12.48347 -12.18504 -12.11915 -12.02938 -11.94765 -11.82319 -11.56735 -11.13013 -10.92023 -10.89067 -10.71429 -10.59786 -9.36252 -8.90645 -8.57079 -6.43857 -0.19725 0.25846 0.94545 1.00146 1.04002 1.49093 1.55647 1.60889 1.76850 1.92015 2.17313 2.25074 2.62673 2.76213 2.87129 3.19170 3.40392 3.46317 3.67704 3.80528 3.92107 4.08526 4.27898 4.33144 4.33692 4.38832 4.48478 4.51732 4.55113 4.61643 4.68212 4.82388 4.94184 5.03613 5.08446 5.17415 5.20569 5.30496 5.32483 5.52733 5.57459 5.74242 5.80378 5.83752 6.01143 6.07885 6.43100 6.61802 6.92390 6.96635 7.22994 8.15751 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.004340 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.877964 B = 6450.706365 C = 8047.836208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.163 3.837 3 H 0.120 0.880 4 O -0.328 6.328 5 C 0.549 3.451 6 O -0.526 6.526 7 C -0.055 4.055 8 C -0.158 4.158 9 C -0.146 4.146 10 C -0.080 4.080 11 C -0.149 4.149 12 C -0.120 4.120 13 C -0.112 4.112 14 C 0.039 3.961 15 N -0.265 5.265 16 C -0.428 4.428 17 H 0.101 0.899 18 C 0.002 3.998 19 N -0.840 5.840 20 Si 1.112 2.888 21 H -0.270 1.270 22 H -0.266 1.266 23 H -0.259 1.259 24 C 0.268 3.732 25 N -0.548 5.548 26 C 0.192 3.808 27 N -0.326 5.326 28 N -0.368 5.368 29 C 0.077 3.923 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.158 0.842 34 H 0.144 0.856 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.098 0.902 38 H 0.267 0.733 39 H 0.248 0.752 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 7.312 7.027 10.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.106 3.894 3 H 0.137 0.863 4 O -0.242 6.242 5 C 0.398 3.602 6 O -0.417 6.417 7 C -0.167 4.167 8 C -0.185 4.185 9 C -0.151 4.151 10 C -0.099 4.099 11 C -0.168 4.168 12 C -0.140 4.140 13 C -0.132 4.132 14 C -0.076 4.076 15 N 0.071 4.929 16 C -0.555 4.555 17 H 0.119 0.881 18 C -0.208 4.208 19 N -0.467 5.467 20 Si 0.930 3.070 21 H -0.195 1.195 22 H -0.191 1.191 23 H -0.184 1.184 24 C -0.010 4.010 25 N -0.276 5.276 26 C -0.110 4.110 27 N -0.155 5.155 28 N -0.160 5.160 29 C -0.063 4.063 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.091 0.909 33 H 0.175 0.825 34 H 0.162 0.838 35 H 0.171 0.829 36 H 0.160 0.840 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.264 0.736 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.750 5.725 8.012 10.002 hybrid contribution 0.012 1.759 0.078 1.761 sum 1.762 7.484 8.090 11.161 Atomic orbital electron populations 1.22126 0.90554 1.03826 1.04719 1.20954 0.96285 0.94756 0.77421 0.86260 1.87024 1.76995 1.42310 1.17906 1.19904 0.73280 0.84237 0.82824 1.90745 1.49912 1.15174 1.85870 1.19642 1.17470 0.85899 0.93695 1.20648 1.09093 0.99045 0.89718 1.18331 1.09300 0.91724 0.95711 1.20569 0.98586 0.99808 0.90901 1.20849 1.03578 0.91460 1.00899 1.21089 1.01179 0.99222 0.92559 1.20271 1.02498 0.95249 0.95148 1.18864 1.06339 0.96502 0.85906 1.40440 1.40767 1.04272 1.07409 1.20872 1.44450 0.96519 0.93667 0.88137 1.28010 0.90910 1.03619 0.98250 1.70741 1.24351 1.33271 1.18309 0.83005 0.77692 0.71260 0.75061 1.19467 1.19091 1.18392 1.23624 0.96667 0.89570 0.91110 1.70562 1.24344 1.13393 1.19285 1.26673 0.95563 0.99771 0.88957 1.77978 1.25145 0.95849 1.16504 1.50571 1.44596 1.09356 1.11464 1.22497 1.06194 0.71996 1.05591 0.92050 0.87415 0.90871 0.82482 0.83823 0.82861 0.84029 0.88367 0.92273 0.73581 0.87250 0.87160 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 9.46 71.98 0.68 -3.67 16 2 C 0.16 5.26 2.91 29.85 0.09 5.34 16 3 H 0.12 3.25 5.95 -2.38 -0.01 3.24 16 4 O -0.33 -14.08 7.65 -57.79 -0.44 -14.52 16 5 C 0.55 24.62 7.81 70.04 0.55 25.17 16 6 O -0.53 -22.20 16.17 19.55 0.32 -21.88 16 7 C -0.05 -2.70 6.76 39.87 0.27 -2.43 16 8 C -0.16 -7.05 10.55 22.64 0.24 -6.81 16 9 C -0.15 -6.55 6.16 -21.34 -0.13 -6.68 16 10 C -0.08 -2.88 10.06 22.32 0.22 -2.65 16 11 C -0.15 -4.90 9.97 22.03 0.22 -4.68 16 12 C -0.12 -4.47 10.02 22.33 0.22 -4.25 16 13 C -0.11 -5.20 8.75 22.38 0.20 -5.01 16 14 C 0.04 1.94 5.56 39.07 0.22 2.15 16 15 N -0.27 -14.07 2.56 -331.41 -0.85 -14.92 16 16 C -0.43 -23.15 8.66 84.10 0.73 -22.42 16 17 H 0.10 5.61 6.85 -2.91 -0.02 5.59 16 18 C 0.00 0.12 4.19 84.95 0.36 0.48 16 19 N -0.84 -46.45 12.12 21.67 0.26 -46.19 16 20 Si 1.11 46.26 29.98 68.60 2.06 48.32 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 24 C 0.27 8.58 6.88 138.23 0.95 9.53 16 25 N -0.55 -19.83 11.19 -191.78 -2.15 -21.98 16 26 C 0.19 5.65 13.03 180.76 2.36 8.00 16 27 N -0.33 -9.27 12.70 -61.24 -0.78 -10.05 16 28 N -0.37 -9.63 4.04 -359.87 -1.45 -11.08 16 29 C 0.08 1.15 11.29 127.77 1.44 2.59 16 30 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.16 6.10 8.06 -2.91 -0.02 6.08 16 34 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 35 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 37 H 0.10 4.88 6.80 -2.91 -0.02 4.86 16 38 H 0.27 15.70 7.39 -92.71 -0.68 15.02 16 39 H 0.25 5.18 8.06 -2.91 -0.02 5.15 16 40 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.10 1.32 6.97 -2.38 -0.02 1.31 16 Total: -1.00 -72.14 364.75 6.73 -65.42 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 1.15 Total: 32.21 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 8.61 Total: -5.34 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -4.96 Total: -104.21 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -0.13 Total: -36.41 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.06 Total: 48.32 kcal Total: -72.14 6.73 -65.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835609916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.187 kcal (2) G-P(sol) polarization free energy of solvation -72.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds