Wall clock time and date at job start Sat Apr 11 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34232 * 117.00026 * 2 1 4 4 O 1.20824 * 119.99661 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99992 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.46942 * 179.97438 * 5 3 2 7 7 N 1.46495 * 109.47242 * 179.97438 * 6 5 3 8 8 C 1.36938 * 120.00189 * 272.22842 * 7 6 5 9 9 H 1.07996 * 119.99944 * 8.53789 * 8 7 6 10 10 C 1.38818 * 119.99851 * 188.53587 * 8 7 6 11 11 N 1.31615 * 119.99991 * 24.79663 * 10 8 7 12 12 Si 1.86801 * 119.99795 * 204.79727 * 10 8 7 13 13 H 1.48505 * 109.47098 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47038 * 119.99826 * 12 10 8 15 15 H 1.48499 * 109.46670 * 240.00178 * 12 10 8 16 16 C 1.46501 * 119.99796 * 92.22577 * 7 6 5 17 17 C 1.50700 * 109.47543 * 90.00429 * 16 7 6 18 18 O 1.21290 * 119.99337 * 359.97438 * 17 16 7 19 19 N 1.34769 * 120.00677 * 180.02562 * 17 16 7 20 20 C 1.46500 * 120.00243 * 179.72316 * 19 17 16 21 21 H 1.08992 * 109.47189 * 325.27229 * 20 19 17 22 22 C 1.53001 * 109.47253 * 85.27218 * 20 19 17 23 23 C 1.50700 * 109.46932 * 205.27239 * 20 19 17 24 24 C 1.33391 * 125.19914 * 140.00224 * 23 20 19 25 25 C 1.38431 * 114.91852 * 179.97438 * 24 23 20 26 26 C 1.33380 * 114.92043 * 0.02562 * 25 24 23 27 27 S 1.75881 * 125.20469 * 319.69171 * 23 20 19 28 28 H 1.08998 * 109.47049 * 300.00371 * 1 2 3 29 29 H 1.08997 * 109.46882 * 60.00516 * 1 2 3 30 30 H 1.09002 * 109.46698 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47312 * 59.99898 * 5 3 2 32 32 H 1.09002 * 109.47041 * 299.99549 * 5 3 2 33 33 H 1.09002 * 109.47132 * 59.99871 * 6 5 3 34 34 H 1.09001 * 109.47411 * 299.99954 * 6 5 3 35 35 H 0.97008 * 119.99801 * 180.02562 * 11 10 8 36 36 H 1.09005 * 109.47643 * 330.00223 * 16 7 6 37 37 H 1.09005 * 109.46984 * 210.00173 * 16 7 6 38 38 H 0.97001 * 119.99744 * 359.97438 * 19 17 16 39 39 H 1.09008 * 109.46970 * 60.00160 * 22 20 19 40 40 H 1.08993 * 109.47310 * 179.97438 * 22 20 19 41 41 H 1.09001 * 109.47107 * 300.00134 * 22 20 19 42 42 H 1.07999 * 122.54338 * 359.97438 * 24 23 20 43 43 H 1.08003 * 122.53680 * 180.02562 * 25 24 23 44 44 H 1.07999 * 125.20518 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0002 2.7421 -0.0002 7 7 5.4631 2.8188 0.0010 8 6 6.1483 2.8095 1.1866 9 1 5.6264 2.6078 2.1103 10 6 7.5137 3.0595 1.2011 11 7 8.0647 3.7608 0.2331 12 14 8.5691 2.4004 2.5944 13 1 7.7154 1.6490 3.5493 14 1 9.6086 1.4950 2.0423 15 1 9.2222 3.5328 3.2988 16 6 6.1931 2.9054 -1.2663 17 6 6.3691 4.3529 -1.6468 18 8 5.9277 5.2262 -0.9301 19 7 7.0159 4.6770 -2.7838 20 6 7.1817 6.0840 -3.1567 21 1 6.3035 6.6487 -2.8438 22 6 8.4247 6.6511 -2.4682 23 6 7.3420 6.1920 -4.6513 24 6 6.7984 7.1398 -5.4164 25 6 7.0855 7.0354 -6.7666 26 6 7.8617 6.0026 -7.0979 27 16 8.2808 5.0921 -5.6524 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9565 0.7806 -0.8891 32 1 3.9558 0.7810 0.8909 33 1 3.6100 3.2368 0.8893 34 1 3.6108 3.2356 -0.8906 35 1 9.0189 3.9351 0.2431 36 1 5.6308 2.3907 -2.0455 37 1 7.1713 2.4375 -1.1548 38 1 7.3686 3.9785 -3.3571 39 1 9.3030 6.0864 -2.7812 40 1 8.5483 7.6978 -2.7460 41 1 8.3088 6.5730 -1.3871 42 1 6.1810 7.9289 -5.0131 43 1 6.7094 7.7371 -7.4964 44 1 8.1870 5.7643 -8.0998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879475417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:52 Heat of formation + Delta-G solvation = -76.624687 kcal Electronic energy + Delta-G solvation = -27389.992588 eV Core-core repulsion = 23434.794316 eV Total energy + Delta-G solvation = -3955.198272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42933 -40.35568 -38.83288 -37.78156 -37.16234 -35.86122 -33.93842 -32.33177 -31.49876 -29.40486 -28.74627 -28.25688 -26.06761 -25.28832 -23.51235 -22.64506 -21.53334 -21.24603 -19.95573 -19.03159 -18.64916 -18.16404 -17.59603 -17.52950 -17.18828 -16.77844 -16.31933 -16.11859 -15.77102 -15.35407 -15.17016 -14.61398 -14.61171 -14.56936 -14.02515 -13.87733 -13.64299 -13.56827 -13.46847 -13.25320 -13.09492 -13.05927 -12.80340 -12.75472 -12.72598 -12.32787 -12.22509 -12.01409 -11.84605 -11.79659 -11.68241 -11.56146 -11.50953 -10.73166 -10.21735 -9.80264 -9.54505 -9.36980 -8.88624 -7.83842 -5.11895 0.07779 0.68925 1.12513 1.22698 1.50101 1.54482 1.63031 1.80698 1.85026 2.44608 2.55732 2.77571 3.32665 3.61136 3.67276 4.00354 4.19943 4.24142 4.29922 4.32161 4.35226 4.36275 4.39050 4.54482 4.63422 4.70485 4.70889 4.74892 4.77594 4.86075 4.99231 5.05246 5.20800 5.23108 5.28592 5.32422 5.41538 5.45601 5.57420 5.71626 5.92241 6.26923 6.78731 6.96584 7.18382 7.81395 8.04331 8.26745 9.23062 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008832 B = 0.003506 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.486072 B = 7984.862591 C =10393.320475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.470 3.530 4 O -0.544 6.544 5 C -0.118 4.118 6 C 0.170 3.830 7 N -0.582 5.582 8 C -0.260 4.260 9 H 0.074 0.926 10 C -0.041 4.041 11 N -0.909 5.909 12 Si 0.960 3.040 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.309 1.309 16 C 0.161 3.839 17 C 0.532 3.468 18 O -0.580 6.580 19 N -0.732 5.732 20 C 0.223 3.777 21 H 0.070 0.930 22 C -0.140 4.140 23 C -0.196 4.196 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.208 4.208 27 S 0.100 5.900 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.134 0.866 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.030 0.970 34 H 0.039 0.961 35 H 0.246 0.754 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.396 0.604 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.034 0.966 42 H 0.145 0.855 43 H 0.166 0.834 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 -3.362 -14.995 15.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.315 3.685 4 O -0.435 6.435 5 C -0.158 4.158 6 C 0.043 3.957 7 N -0.301 5.301 8 C -0.390 4.390 9 H 0.092 0.908 10 C -0.237 4.237 11 N -0.555 5.555 12 Si 0.790 3.210 13 H -0.196 1.196 14 H -0.212 1.212 15 H -0.237 1.237 16 C 0.031 3.969 17 C 0.320 3.680 18 O -0.458 6.458 19 N -0.387 5.387 20 C 0.116 3.884 21 H 0.088 0.912 22 C -0.199 4.199 23 C -0.314 4.314 24 C -0.168 4.168 25 C -0.169 4.169 26 C -0.344 4.344 27 S 0.363 5.637 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.230 0.770 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.163 0.837 43 H 0.183 0.817 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -3.047 -3.725 -14.165 14.960 hybrid contribution -0.104 1.344 0.633 1.489 sum -3.150 -2.381 -13.532 14.097 Atomic orbital electron populations 1.23536 0.75141 1.05637 1.02337 1.86532 1.24852 1.32832 1.83807 1.24189 0.92559 0.81016 0.70738 1.90639 1.68095 1.37563 1.47159 1.22016 0.85284 1.01579 1.06936 1.20384 0.83444 0.92390 0.99468 1.44043 1.00442 1.83317 1.02334 1.19461 0.90853 1.41578 0.87085 0.90847 1.25297 0.98480 0.99536 1.00352 1.70078 1.10430 1.38882 1.36061 0.85322 0.78934 0.77323 0.79394 1.19591 1.21164 1.23725 1.20800 0.98487 0.90759 0.86882 1.22122 0.74225 0.93773 0.77889 1.90492 1.52011 1.52099 1.51148 1.46174 1.60756 1.06541 1.25232 1.18941 0.98151 0.84326 0.86987 0.91188 1.21991 0.97151 1.00923 0.99822 1.24610 1.06143 1.02341 0.98270 1.20390 1.02314 1.00210 0.93853 1.20383 1.00750 1.00073 0.95700 1.26018 1.05619 1.00273 1.02451 1.84277 1.49926 1.30947 0.98555 0.92354 0.92056 0.84811 0.86120 0.87003 0.95112 0.94269 0.94442 0.90925 0.88933 0.76962 0.92404 0.90844 0.94635 0.83745 0.81672 0.79077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.71 16 2 O -0.36 -9.71 10.57 -51.43 -0.54 -10.26 16 3 C 0.47 15.18 7.96 71.24 0.57 15.75 16 4 O -0.54 -20.93 15.73 21.97 0.35 -20.59 16 5 C -0.12 -3.85 6.13 29.85 0.18 -3.67 16 6 C 0.17 7.23 4.96 86.38 0.43 7.66 16 7 N -0.58 -27.98 2.02 -706.33 -1.43 -29.41 16 8 C -0.26 -13.84 9.70 84.03 0.82 -13.02 16 9 H 0.07 3.89 7.94 -2.91 -0.02 3.87 16 10 C -0.04 -2.18 4.90 84.86 0.42 -1.77 16 11 N -0.91 -49.91 8.96 21.65 0.19 -49.72 16 12 Si 0.96 44.00 29.62 68.60 2.03 46.03 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.31 -14.84 7.11 99.48 0.71 -14.13 16 16 C 0.16 7.11 5.42 85.63 0.46 7.58 16 17 C 0.53 24.94 5.86 87.66 0.51 25.46 16 18 O -0.58 -32.92 15.82 -3.06 -0.05 -32.97 16 19 N -0.73 -27.70 5.06 -446.11 -2.26 -29.96 16 20 C 0.22 7.78 3.01 44.25 0.13 7.91 16 21 H 0.07 2.76 7.55 -2.39 -0.02 2.74 16 22 C -0.14 -4.96 9.47 71.98 0.68 -4.28 16 23 C -0.20 -5.37 5.44 24.59 0.13 -5.24 16 24 C -0.14 -3.21 10.04 21.22 0.21 -3.00 16 25 C -0.14 -2.57 10.18 21.22 0.22 -2.35 16 26 C -0.21 -3.67 11.23 66.72 0.75 -2.92 16 27 S 0.10 2.26 22.32 -56.49 -1.26 1.00 16 28 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 29 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 30 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 32 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 33 H 0.03 1.44 8.01 -2.39 -0.02 1.42 16 34 H 0.04 1.70 8.01 -2.39 -0.02 1.68 16 35 H 0.25 13.40 8.31 -92.70 -0.77 12.63 16 36 H 0.07 2.64 8.07 -2.38 -0.02 2.62 16 37 H 0.09 4.36 6.29 -2.38 -0.02 4.34 16 38 H 0.40 12.99 7.69 -92.71 -0.71 12.27 16 39 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 43 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 44 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -72.17 387.45 4.04 -68.13 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.30 Total: 27.92 kcal Atomic # 6 Polarization: 23.11 SS G_CDS: 6.71 Total: 29.82 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -3.49 Total: -109.09 kcal Atomic # 8 Polarization: -63.57 SS G_CDS: -0.25 Total: -63.82 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.26 Total: 1.00 kcal Total: -72.17 4.04 -68.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879475417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.493 kcal (2) G-P(sol) polarization free energy of solvation -72.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds