Wall clock time and date at job start Sat Apr 11 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 H 1.09005 * 109.46462 * 55.00734 * 5 4 2 7 7 C 1.53005 * 109.46980 * 174.99708 * 5 4 2 8 8 N 1.46490 * 109.47637 * 295.00250 * 5 4 2 9 9 C 1.34775 * 120.00466 * 154.99469 * 8 5 4 10 10 O 1.21779 * 119.99594 * 0.02562 * 9 8 5 11 11 C 1.41712 * 120.00437 * 179.97438 * 9 8 5 12 12 S 1.75669 * 125.09972 * 359.70733 * 11 9 8 13 13 C 1.75556 * 91.21079 * 179.90350 * 12 11 9 14 14 C 1.34199 * 110.67809 * 0.30924 * 13 12 11 15 15 C 1.37147 * 125.10595 * 180.02562 * 11 9 8 16 16 O 1.37654 * 124.48570 * 0.11111 * 15 11 9 17 17 C 1.43380 * 114.51266 * 163.34965 * 16 15 11 18 18 C 1.53225 * 109.14386 * 46.50331 * 17 16 15 19 19 O 1.38254 * 124.14365 * 179.97438 * 14 13 12 20 20 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 21 21 C 1.36944 * 120.00017 * 275.00375 * 20 2 1 22 22 H 1.07997 * 119.99813 * 359.97438 * 21 20 2 23 23 C 1.38806 * 119.99784 * 180.02562 * 21 20 2 24 24 N 1.31621 * 120.00406 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99911 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46961 * 89.99726 * 25 23 21 27 27 H 1.48493 * 109.47324 * 209.99682 * 25 23 21 28 28 H 1.48503 * 109.47003 * 329.99890 * 25 23 21 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 34 34 H 1.09000 * 109.46373 * 60.00502 * 7 5 4 35 35 H 1.08994 * 109.46862 * 179.97438 * 7 5 4 36 36 H 1.08993 * 109.47399 * 300.00897 * 7 5 4 37 37 H 0.97006 * 119.99783 * 335.00694 * 8 5 4 38 38 H 1.08001 * 124.66117 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.52580 * 166.40370 * 17 16 15 40 40 H 1.09004 * 109.52345 * 286.60257 * 17 16 15 41 41 H 1.08991 * 109.52444 * 57.65627 * 18 17 16 42 42 H 1.08996 * 109.52105 * 177.78578 * 18 17 16 43 43 H 0.96995 * 120.00293 * 94.99410 * 20 2 1 44 44 H 0.96997 * 120.00066 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.9954 -0.9924 -0.3867 7 6 4.0852 -1.4384 -2.4924 8 7 3.9481 0.7893 -1.4924 9 6 5.1613 1.2135 -1.0866 10 8 5.9391 0.4306 -0.5717 11 6 5.5321 2.5701 -1.2600 12 16 4.5226 3.8077 -1.9915 13 6 5.7705 5.0193 -1.7531 14 6 6.8505 4.4784 -1.1684 15 6 6.7354 3.1126 -0.8875 16 8 7.7569 2.4082 -0.2915 17 6 9.0323 3.0621 -0.3307 18 6 8.8591 4.5266 0.0850 19 8 7.9970 5.1837 -0.8528 20 7 2.0184 -0.6906 1.1962 21 6 2.1491 -0.0074 2.3758 22 1 1.8926 1.0405 2.4242 23 6 2.6122 -0.6617 3.5090 24 7 2.9253 -1.9388 3.4500 25 14 2.7912 0.2703 5.1180 26 1 1.5237 0.1791 5.8865 27 1 3.8960 -0.3228 5.9134 28 1 3.0960 1.6956 4.8332 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2618 -2.1370 34 1 3.6547 -1.0594 -3.4192 35 1 5.1715 -1.3611 -2.5385 36 1 3.8001 -2.4820 -2.3594 37 1 3.3285 1.4128 -1.9027 38 1 5.6830 6.0563 -2.0419 39 1 9.7170 2.5665 0.3576 40 1 9.4346 3.0157 -1.3427 41 1 8.4165 4.5730 1.0799 42 1 9.8311 5.0197 0.0954 43 1 2.2490 -1.6317 1.1527 44 1 3.2486 -2.3960 4.2420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135852113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:23 Heat of formation + Delta-G solvation = -87.574570 kcal Electronic energy + Delta-G solvation = -28104.893174 eV Core-core repulsion = 24149.220079 eV Total energy + Delta-G solvation = -3955.673095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.13779 -40.82564 -38.42555 -38.03719 -36.71150 -36.01086 -34.04459 -32.52315 -30.83175 -30.58282 -30.21005 -27.59674 -26.10420 -25.62825 -24.76809 -22.89902 -21.92297 -21.22808 -20.34065 -20.23964 -19.24679 -18.36085 -18.09818 -17.49971 -17.01674 -16.68391 -16.39068 -15.87569 -15.85586 -15.73721 -15.60054 -15.44289 -15.31612 -14.72317 -14.52506 -14.30114 -14.12365 -13.71388 -13.59885 -13.35553 -13.17344 -12.92603 -12.78664 -12.68040 -12.45634 -12.24659 -12.21628 -12.12213 -12.03522 -11.82162 -11.81508 -11.56112 -11.42213 -11.05130 -10.90572 -10.10533 -9.63682 -9.03614 -8.94097 -7.91955 -5.16929 -0.72606 0.26304 0.48821 1.06104 1.40090 1.43076 1.49870 2.08001 2.22374 2.27493 2.46549 2.55579 3.07787 3.42454 3.51738 3.80455 3.88148 3.95030 4.01438 4.06939 4.14262 4.27233 4.37918 4.40667 4.49909 4.54981 4.56474 4.69120 4.79570 4.83553 4.85804 4.94093 5.04979 5.11893 5.23795 5.34999 5.42212 5.51060 5.58922 5.62909 5.66367 5.97341 6.31499 6.54704 7.26831 7.37091 8.17767 8.37298 9.32001 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.004113 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.483146 B = 6805.448156 C = 8041.856829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.162 3.838 3 H 0.040 0.960 4 C -0.118 4.118 5 C 0.147 3.853 6 H 0.046 0.954 7 C -0.150 4.150 8 N -0.703 5.703 9 C 0.583 3.417 10 O -0.571 6.571 11 C -0.322 4.322 12 S 0.277 5.723 13 C -0.191 4.191 14 C 0.012 3.988 15 C 0.113 3.887 16 O -0.300 6.300 17 C 0.002 3.998 18 C 0.018 3.982 19 O -0.296 6.296 20 N -0.732 5.732 21 C -0.225 4.225 22 H 0.069 0.931 23 C -0.078 4.078 24 N -0.969 5.969 25 Si 0.960 3.040 26 H -0.282 1.282 27 H -0.300 1.300 28 H -0.276 1.276 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.029 0.971 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.405 0.595 38 H 0.218 0.782 39 H 0.145 0.855 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.166 0.834 43 H 0.370 0.630 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.322 16.454 -18.091 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.058 0.942 4 C -0.156 4.156 5 C 0.043 3.957 6 H 0.065 0.935 7 C -0.208 4.208 8 N -0.355 5.355 9 C 0.372 3.628 10 O -0.452 6.452 11 C -0.442 4.442 12 S 0.540 5.460 13 C -0.329 4.329 14 C -0.044 4.044 15 C 0.051 3.949 16 O -0.214 6.214 17 C -0.073 4.073 18 C -0.057 4.057 19 O -0.212 6.212 20 N -0.372 5.372 21 C -0.357 4.357 22 H 0.087 0.913 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.790 3.210 26 H -0.209 1.209 27 H -0.227 1.227 28 H -0.201 1.201 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.241 0.759 38 H 0.235 0.765 39 H 0.162 0.838 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.183 0.817 43 H 0.202 0.798 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.448 16.045 -18.223 24.883 hybrid contribution 1.826 -0.204 2.141 2.821 sum 7.274 15.840 -16.082 23.716 Atomic orbital electron populations 1.22293 0.97369 1.00970 1.00830 1.20538 0.92879 0.95141 0.86032 0.94214 1.22098 0.92356 1.02529 0.98656 1.20876 0.95926 0.80398 0.98524 0.93520 1.22080 1.00252 1.00361 0.98156 1.45708 1.15522 1.11884 1.62379 1.15920 0.82532 0.86333 0.78012 1.90861 1.52525 1.56881 1.44974 1.22717 1.01438 1.00129 1.19932 1.83570 1.13201 0.93405 1.55776 1.25458 0.94251 1.06402 1.06747 1.18288 0.91424 0.88163 1.06568 1.19348 0.89855 0.90058 0.95616 1.87178 1.17492 1.44146 1.72555 1.24084 0.83401 0.94482 1.05296 1.23851 0.97121 0.92890 0.91884 1.87009 1.29281 1.43103 1.61848 1.42599 1.78234 1.10100 1.06258 1.19499 1.33945 0.93751 0.88494 0.91339 1.25422 1.03562 0.96873 1.01182 1.69799 1.53156 1.10090 1.28984 0.85330 0.76977 0.77930 0.80793 1.20907 1.22716 1.20087 0.90277 0.93807 0.95138 0.90160 0.87299 0.89719 0.94673 0.90834 0.75879 0.76522 0.83778 0.89432 0.91033 0.81684 0.79819 0.94423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 9.49 71.98 0.68 -4.43 16 2 C 0.16 6.13 2.84 44.99 0.13 6.26 16 3 H 0.04 1.55 7.56 -2.39 -0.02 1.53 16 4 C -0.12 -3.49 4.29 30.59 0.13 -3.35 16 5 C 0.15 5.07 2.52 45.00 0.11 5.19 16 6 H 0.05 2.22 7.05 -2.38 -0.02 2.20 16 7 C -0.15 -4.25 9.48 71.98 0.68 -3.57 16 8 N -0.70 -22.67 4.43 -451.39 -2.00 -24.67 16 9 C 0.58 22.88 7.56 85.10 0.64 23.52 16 10 O -0.57 -28.57 15.52 11.67 0.18 -28.39 16 11 C -0.32 -10.35 6.25 22.87 0.14 -10.21 16 12 S 0.28 5.37 22.17 -56.49 -1.25 4.12 16 13 C -0.19 -3.48 11.17 66.90 0.75 -2.73 16 14 C 0.01 0.28 6.55 21.75 0.14 0.43 16 15 C 0.11 3.62 6.58 22.42 0.15 3.77 16 16 O -0.30 -10.35 9.60 -90.53 -0.87 -11.22 16 17 C 0.00 0.05 7.14 72.06 0.51 0.56 16 18 C 0.02 0.30 7.14 72.06 0.51 0.82 16 19 O -0.30 -6.36 10.77 -113.14 -1.22 -7.58 16 20 N -0.73 -37.56 4.49 -322.93 -1.45 -39.01 16 21 C -0.22 -13.02 9.93 84.03 0.83 -12.19 16 22 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 23 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 24 N -0.97 -62.70 13.06 21.65 0.28 -62.42 16 25 Si 0.96 49.35 29.55 68.60 2.03 51.37 16 26 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 27 H -0.30 -15.70 7.11 99.48 0.71 -15.00 16 28 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.40 9.96 7.54 -92.70 -0.70 9.26 16 38 H 0.22 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.17 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.37 20.68 7.80 -92.71 -0.72 19.96 16 44 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -86.32 379.18 1.21 -85.11 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.39 Total: 32.95 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 5.89 Total: -0.26 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -3.17 Total: -126.10 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -1.91 Total: -47.19 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 2.03 Total: 51.37 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -1.25 Total: 4.12 kcal Total: -86.32 1.21 -85.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135852113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.463 kcal (2) G-P(sol) polarization free energy of solvation -86.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds