Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35671 * 116.99820 * 2 1 4 4 C 1.38706 * 120.13717 * 0.02562 * 3 2 1 5 5 C 1.38052 * 120.09812 * 179.97438 * 4 3 2 6 6 C 1.38645 * 120.37803 * 359.97370 * 5 4 3 7 7 Cl 1.73601 * 119.86148 * 180.02562 * 6 5 4 8 8 C 1.37896 * 120.27195 * 359.76616 * 6 5 4 9 9 C 1.39706 * 119.89369 * 0.51412 * 8 6 5 10 10 C 1.47537 * 120.18557 * 179.74555 * 9 8 6 11 11 O 1.21588 * 120.00188 * 179.44939 * 10 9 8 12 12 N 1.34784 * 119.99899 * 359.71884 * 10 9 8 13 13 C 1.46499 * 119.99893 * 179.73034 * 12 10 9 14 14 H 1.09002 * 109.47048 * 324.99733 * 13 12 10 15 15 C 1.52995 * 109.47258 * 85.00288 * 13 12 10 16 16 C 1.53004 * 109.46824 * 204.99873 * 13 12 10 17 17 C 1.53007 * 109.46847 * 65.00150 * 16 13 12 18 18 H 1.09003 * 109.47140 * 304.99458 * 17 16 13 19 19 C 1.53002 * 109.46719 * 185.00184 * 17 16 13 20 20 N 1.46494 * 109.47562 * 64.99922 * 17 16 13 21 21 C 1.36934 * 120.00204 * 204.99810 * 20 17 16 22 22 H 1.08000 * 119.99975 * 359.97438 * 21 20 17 23 23 C 1.38815 * 119.99802 * 179.97438 * 21 20 17 24 24 N 1.31624 * 119.99517 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00106 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47120 * 89.99813 * 25 23 21 27 27 H 1.48501 * 109.47006 * 209.99364 * 25 23 21 28 28 H 1.48495 * 109.47364 * 329.99921 * 25 23 21 29 29 H 1.08996 * 109.47582 * 299.99734 * 1 2 3 30 30 H 1.09006 * 109.47292 * 60.00922 * 1 2 3 31 31 H 1.09005 * 109.46870 * 179.97438 * 1 2 3 32 32 H 1.07995 * 119.95175 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.81026 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.04925 * 180.27755 * 8 6 5 35 35 H 0.97005 * 119.99846 * 359.72822 * 12 10 9 36 36 H 1.09003 * 109.47025 * 299.99449 * 15 13 12 37 37 H 1.09002 * 109.47544 * 59.99749 * 15 13 12 38 38 H 1.09007 * 109.47281 * 179.97438 * 15 13 12 39 39 H 1.08998 * 109.47231 * 184.99873 * 16 13 12 40 40 H 1.08998 * 109.47079 * 305.00407 * 16 13 12 41 41 H 1.09003 * 109.46721 * 299.99530 * 19 17 16 42 42 H 1.08997 * 109.47675 * 59.99524 * 19 17 16 43 43 H 1.09005 * 109.46774 * 180.02562 * 19 17 16 44 44 H 0.97005 * 119.99763 * 24.99950 * 20 17 16 45 45 H 0.97001 * 119.99659 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2922 2.3739 0.0005 5 6 1.9197 3.6036 0.0011 6 6 3.3038 3.6844 0.0016 7 17 4.0790 5.2377 0.0030 8 6 4.0672 2.5360 0.0065 9 6 3.4440 1.2856 0.0000 10 6 4.2545 0.0528 -0.0004 11 8 3.7086 -1.0336 0.0040 12 7 5.6001 0.1310 -0.0004 13 6 6.4048 -1.0932 0.0051 14 1 5.9009 -1.8567 0.5977 15 6 6.5805 -1.5945 -1.4297 16 6 7.7773 -0.7984 0.6139 17 6 7.6108 -0.4169 2.0862 18 1 6.9109 0.4147 2.1691 19 6 8.9662 -0.0018 2.6618 20 7 7.0942 -1.5663 2.8332 21 6 6.3938 -1.3701 3.9934 22 1 6.2225 -0.3680 4.3580 23 6 5.9038 -2.4593 4.7010 24 7 5.2310 -2.2707 5.8164 25 14 6.2006 -4.1925 4.0708 26 1 7.4718 -4.7134 4.6347 27 1 5.0777 -5.0701 4.4882 28 1 6.2884 -4.1721 2.5886 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2136 2.3190 0.0005 33 1 1.3291 4.5078 0.0011 34 1 5.1451 2.6031 0.0114 35 1 6.0355 0.9977 -0.0040 36 1 5.6027 -1.8045 -1.8634 37 1 7.0844 -0.8310 -2.0223 38 1 7.1797 -2.5051 -1.4256 39 1 8.4067 -1.6850 0.5373 40 1 8.2441 0.0263 0.0754 41 1 9.6661 -0.8334 2.5789 42 1 9.3507 0.8534 2.1061 43 1 8.8477 0.2696 3.7109 44 1 7.2483 -2.4663 2.5060 45 1 4.8890 -3.0318 6.3111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136082175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -67.484834 kcal Electronic energy + Delta-G solvation = -28001.096951 eV Core-core repulsion = 24044.251306 eV Total energy + Delta-G solvation = -3956.845645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.71765 -40.28696 -38.73378 -38.32431 -37.14139 -36.09807 -34.12761 -33.15889 -31.55633 -31.02818 -30.83141 -28.19597 -27.60027 -25.49829 -25.20720 -23.36035 -22.46895 -21.72094 -21.24557 -19.84762 -19.44930 -18.34560 -17.73581 -16.98011 -16.87014 -16.58255 -16.49797 -16.00500 -15.88153 -15.58506 -15.24689 -14.84076 -14.72991 -14.58776 -14.36998 -14.17265 -14.01142 -13.56581 -13.42612 -13.24467 -13.03888 -12.97862 -12.82384 -12.79638 -12.62526 -12.38577 -12.32564 -12.01656 -11.95311 -11.86131 -11.68285 -11.66483 -11.44077 -10.96439 -10.83635 -10.31842 -9.95733 -9.26113 -9.22913 -8.00803 -5.30490 -0.31115 0.09335 1.09754 1.33309 1.38682 1.43867 1.81390 2.19633 2.28512 2.48624 2.67563 3.32390 3.53828 3.59989 3.66742 3.82989 3.89730 4.06763 4.10510 4.27296 4.29188 4.35349 4.35840 4.52798 4.58620 4.62204 4.66857 4.71627 4.77621 4.83288 4.91095 4.99618 5.02703 5.04389 5.08964 5.22907 5.33589 5.37743 5.39235 5.61584 5.63784 5.80670 6.24213 6.29504 6.63061 7.12110 7.34518 7.90955 8.06711 9.21640 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009754 B = 0.003874 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.962135 B = 7225.909490 C = 8019.787504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.314 6.314 3 C 0.169 3.831 4 C -0.202 4.202 5 C -0.035 4.035 6 C -0.089 4.089 7 Cl -0.057 7.057 8 C -0.035 4.035 9 C -0.185 4.185 10 C 0.553 3.447 11 O -0.565 6.565 12 N -0.704 5.704 13 C 0.142 3.858 14 H 0.048 0.952 15 C -0.151 4.151 16 C -0.121 4.121 17 C 0.166 3.834 18 H 0.041 0.959 19 C -0.156 4.156 20 N -0.748 5.748 21 C -0.212 4.212 22 H 0.053 0.947 23 C -0.067 4.067 24 N -0.988 5.988 25 Si 0.948 3.052 26 H -0.274 1.274 27 H -0.303 1.303 28 H -0.258 1.258 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.174 0.826 33 H 0.172 0.828 34 H 0.158 0.842 35 H 0.408 0.592 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.025 0.975 44 H 0.362 0.638 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 14.661 -20.239 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.226 6.226 3 C 0.120 3.880 4 C -0.220 4.220 5 C -0.054 4.054 6 C -0.116 4.116 7 Cl -0.028 7.028 8 C -0.054 4.054 9 C -0.190 4.190 10 C 0.341 3.659 11 O -0.445 6.445 12 N -0.357 5.357 13 C 0.038 3.962 14 H 0.066 0.934 15 C -0.209 4.209 16 C -0.159 4.159 17 C 0.058 3.942 18 H 0.059 0.941 19 C -0.216 4.216 20 N -0.392 5.392 21 C -0.343 4.343 22 H 0.071 0.929 23 C -0.258 4.258 24 N -0.639 5.639 25 Si 0.777 3.223 26 H -0.200 1.200 27 H -0.231 1.231 28 H -0.183 1.183 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.191 0.809 33 H 0.190 0.810 34 H 0.175 0.825 35 H 0.246 0.754 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.130 0.870 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.044 0.956 44 H 0.195 0.805 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.908 13.924 -20.090 24.754 hybrid contribution -0.213 -0.845 0.588 1.052 sum -4.121 13.079 -19.502 23.841 Atomic orbital electron populations 1.23491 0.76338 1.05552 1.03035 1.86388 1.23509 1.26334 1.86354 1.19492 0.91270 0.85954 0.91241 1.21497 1.01997 0.90118 1.08418 1.21372 0.92204 0.99002 0.92775 1.20701 0.93520 0.86853 1.10481 1.98376 1.81061 1.26140 1.97208 1.21142 1.01146 0.88745 0.94353 1.19375 0.91592 0.93608 1.14389 1.18267 0.82931 0.88548 0.76109 1.90795 1.72507 1.30429 1.50734 1.45771 1.05010 1.10273 1.74627 1.20933 0.91756 0.86551 0.96964 0.93396 1.22089 1.01376 1.02378 0.95069 1.22155 0.94949 1.04395 0.94413 1.20518 0.93835 0.89238 0.90570 0.94136 1.22277 0.97898 1.01298 1.00111 1.42820 1.65892 1.04457 1.26026 1.18962 1.24201 0.93119 0.98066 0.92935 1.25406 1.01140 1.01591 0.97685 1.69883 1.44406 1.30644 1.19012 0.85494 0.77044 0.80942 0.78860 1.19953 1.23060 1.18260 0.91063 0.89867 0.87593 0.80907 0.81025 0.82463 0.75448 0.94554 0.89878 0.90634 0.89369 0.87005 0.92907 0.90204 0.95605 0.80543 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.31 -10.01 8.57 -68.96 -0.59 -10.60 16 3 C 0.17 4.78 6.70 22.84 0.15 4.94 16 4 C -0.20 -3.82 9.03 22.34 0.20 -3.62 16 5 C -0.03 -0.57 9.81 22.32 0.22 -0.36 16 6 C -0.09 -1.72 6.31 22.29 0.14 -1.58 16 7 Cl -0.06 -0.96 28.94 -2.72 -0.08 -1.04 16 8 C -0.03 -0.78 9.31 22.54 0.21 -0.57 16 9 C -0.19 -5.56 5.89 -20.01 -0.12 -5.68 16 10 C 0.55 20.18 7.73 86.69 0.67 20.85 16 11 O -0.57 -26.10 14.82 16.94 0.25 -25.85 16 12 N -0.70 -20.80 4.40 -445.69 -1.96 -22.76 16 13 C 0.14 4.38 2.52 44.99 0.11 4.49 16 14 H 0.05 2.01 7.05 -2.39 -0.02 2.00 16 15 C -0.15 -3.72 9.48 71.98 0.68 -3.04 16 16 C -0.12 -3.12 4.29 30.60 0.13 -2.98 16 17 C 0.17 5.87 2.84 45.00 0.13 6.00 16 18 H 0.04 1.55 7.56 -2.39 -0.02 1.53 16 19 C -0.16 -4.89 9.49 71.98 0.68 -4.21 16 20 N -0.75 -35.23 4.30 -322.93 -1.39 -36.62 16 21 C -0.21 -12.51 10.41 84.03 0.87 -11.63 16 22 H 0.05 3.41 8.06 -2.91 -0.02 3.38 16 23 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 24 N -0.99 -66.50 13.97 21.65 0.30 -66.19 16 25 Si 0.95 48.81 27.74 68.60 1.90 50.71 16 26 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 27 H -0.30 -16.06 7.11 99.48 0.71 -15.36 16 28 H -0.26 -12.30 6.52 99.48 0.65 -11.65 16 29 H 0.07 1.14 7.66 -2.39 -0.02 1.12 16 30 H 0.08 1.08 7.66 -2.38 -0.02 1.06 16 31 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.17 2.09 6.30 -2.91 -0.02 2.07 16 33 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 34 H 0.16 2.83 6.40 -2.91 -0.02 2.81 16 35 H 0.41 9.03 6.63 -92.70 -0.61 8.42 16 36 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.36 16.71 5.66 -92.70 -0.52 16.18 16 45 H 0.25 16.39 8.31 -92.71 -0.77 15.61 16 Total: -1.00 -85.53 385.21 3.93 -81.60 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: -0.18 Total: 30.56 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 5.67 Total: 0.19 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -3.04 Total: -125.58 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.34 Total: -36.45 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 1.90 Total: 50.71 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -85.53 3.93 -81.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136082175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.114 kcal (2) G-P(sol) polarization free energy of solvation -85.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds