Wall clock time and date at job start Sat Apr 11 2020 05:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35678 * 116.99923 * 2 1 4 4 C 1.38692 * 120.13867 * 0.02562 * 3 2 1 5 5 C 1.38052 * 120.10292 * 179.97438 * 4 3 2 6 6 C 1.38649 * 120.37225 * 0.02562 * 5 4 3 7 7 Cl 1.73601 * 119.85927 * 180.02562 * 6 5 4 8 8 C 1.37881 * 120.27430 * 359.78351 * 6 5 4 9 9 C 1.39708 * 119.89902 * 0.44481 * 8 6 5 10 10 C 1.47534 * 120.19181 * 179.81282 * 9 8 6 11 11 O 1.21591 * 120.00242 * 179.72202 * 10 9 8 12 12 N 1.34784 * 119.99744 * 359.72290 * 10 9 8 13 13 C 1.46502 * 119.99713 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.47271 * 35.00090 * 13 12 10 15 15 C 1.52993 * 109.47002 * 274.99674 * 13 12 10 16 16 C 1.52998 * 109.46555 * 155.00057 * 13 12 10 17 17 C 1.52998 * 109.47384 * 294.99651 * 16 13 12 18 18 H 1.09003 * 109.47082 * 305.00221 * 17 16 13 19 19 C 1.52995 * 109.47443 * 185.00170 * 17 16 13 20 20 N 1.46498 * 109.47009 * 65.00045 * 17 16 13 21 21 C 1.36935 * 120.00239 * 204.99963 * 20 17 16 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 17 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 17 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09010 * 109.46939 * 299.99616 * 1 2 3 30 30 H 1.08995 * 109.47369 * 59.99734 * 1 2 3 31 31 H 1.08997 * 109.47382 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.95020 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.81776 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.05215 * 180.23872 * 8 6 5 35 35 H 0.96995 * 119.99521 * 359.97438 * 12 10 9 36 36 H 1.09006 * 109.47749 * 300.00516 * 15 13 12 37 37 H 1.09001 * 109.47223 * 60.00644 * 15 13 12 38 38 H 1.09004 * 109.47405 * 180.02562 * 15 13 12 39 39 H 1.08997 * 109.46877 * 175.00041 * 16 13 12 40 40 H 1.08999 * 109.47306 * 55.00192 * 16 13 12 41 41 H 1.09003 * 109.46933 * 60.00266 * 19 17 16 42 42 H 1.09004 * 109.47411 * 179.97438 * 19 17 16 43 43 H 1.08996 * 109.47329 * 300.00343 * 19 17 16 44 44 H 0.97004 * 119.99747 * 25.00702 * 20 17 16 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2923 2.3739 0.0005 5 6 1.9198 3.6036 0.0011 6 6 3.3040 3.6843 0.0005 7 17 4.0792 5.2376 0.0019 8 6 4.0672 2.5360 0.0040 9 6 3.4441 1.2856 -0.0014 10 6 4.2545 0.0528 -0.0019 11 8 3.7086 -1.0337 -0.0015 12 7 5.6001 0.1309 -0.0029 13 6 6.4048 -1.0933 -0.0040 14 1 5.9006 -1.8591 -0.5934 15 6 6.5810 -1.5891 1.4326 16 6 7.7769 -0.8010 -0.6145 17 6 7.6099 -0.4251 -2.0881 18 1 7.0636 -1.2143 -2.6047 19 6 8.9880 -0.2544 -2.7304 20 7 6.8646 0.8320 -2.1900 21 6 6.1549 1.1171 -3.3258 22 1 6.1442 0.4150 -4.1464 23 6 5.4491 2.3085 -3.4226 24 7 5.4577 3.1617 -2.4203 25 14 4.4803 2.6971 -4.9717 26 1 5.3489 3.4293 -5.9281 27 1 4.0144 1.4321 -5.5946 28 1 3.3074 3.5389 -4.6240 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.2138 2.3190 0.0005 33 1 1.3293 4.5078 0.0019 34 1 5.1452 2.6031 0.0074 35 1 6.0355 0.9976 -0.0036 36 1 7.0853 -0.8233 2.0221 37 1 5.6035 -1.7973 1.8676 38 1 7.1802 -2.4997 1.4319 39 1 8.4064 -1.6872 -0.5347 40 1 8.2441 0.0258 -0.0793 41 1 9.5425 -1.1898 -2.6546 42 1 8.8690 0.0129 -3.7804 43 1 9.5344 0.5347 -2.2138 44 1 6.8740 1.4625 -1.4529 45 1 5.9604 2.9598 -1.6157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136082176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:55 Heat of formation + Delta-G solvation = -34.470648 kcal Electronic energy + Delta-G solvation = -29324.243355 eV Core-core repulsion = 25368.829312 eV Total energy + Delta-G solvation = -3955.414043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.18905 -38.81044 -37.19897 -36.72073 -35.49665 -34.25567 -32.61492 -31.37730 -29.96124 -29.51608 -28.21160 -27.01634 -26.36060 -23.83582 -23.47793 -21.86776 -21.01333 -20.30828 -19.73092 -18.07477 -17.36035 -16.80027 -16.24099 -15.55944 -15.44619 -15.07006 -14.93455 -14.37167 -14.15872 -14.03553 -13.52620 -13.47534 -13.13340 -13.04666 -12.97461 -12.59020 -12.21291 -12.12464 -11.94865 -11.72296 -11.60746 -11.53837 -11.48333 -11.05038 -11.01242 -10.72702 -10.44697 -10.38887 -10.34132 -10.18970 -10.09345 -9.98665 -9.15208 -9.12381 -8.95878 -8.64268 -8.34072 -7.66208 -6.94534 -6.02528 -3.01639 1.26559 1.70447 2.78652 3.42491 3.53767 3.54583 3.58644 3.71840 3.77982 4.32118 4.69275 4.95241 4.99308 5.10771 5.21716 5.28564 5.38781 5.43630 5.51918 5.55873 5.59444 5.61847 5.68152 5.82999 5.83335 5.95776 5.96675 6.08750 6.10219 6.19343 6.20674 6.34614 6.37295 6.46482 6.49547 6.56003 6.64926 6.82060 6.88422 7.01152 7.16581 7.63630 7.85354 8.18165 8.75493 8.95270 9.22016 10.06430 10.22721 11.39569 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008332 B = 0.006225 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3359.729954 B = 4496.704582 C = 5828.890213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.280 6.280 3 C 0.179 3.821 4 C -0.223 4.223 5 C -0.055 4.055 6 C -0.054 4.054 7 Cl -0.065 7.065 8 C 0.011 3.989 9 C -0.159 4.159 10 C 0.574 3.426 11 O -0.539 6.539 12 N -0.700 5.700 13 C 0.152 3.848 14 H 0.084 0.916 15 C -0.162 4.162 16 C -0.135 4.135 17 C 0.175 3.825 18 H 0.049 0.951 19 C -0.162 4.162 20 N -0.725 5.725 21 C -0.315 4.315 22 H 0.060 0.940 23 C -0.040 4.040 24 N -0.921 5.921 25 Si 1.072 2.928 26 H -0.299 1.299 27 H -0.300 1.300 28 H -0.288 1.288 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.395 0.605 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.036 0.964 42 H 0.052 0.948 43 H 0.043 0.957 44 H 0.358 0.642 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.903 -2.221 8.809 9.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.191 6.191 3 C 0.131 3.869 4 C -0.243 4.243 5 C -0.075 4.075 6 C -0.081 4.081 7 Cl -0.036 7.036 8 C -0.009 4.009 9 C -0.163 4.163 10 C 0.362 3.638 11 O -0.417 6.417 12 N -0.353 5.353 13 C 0.047 3.953 14 H 0.102 0.898 15 C -0.220 4.220 16 C -0.173 4.173 17 C 0.065 3.935 18 H 0.067 0.933 19 C -0.222 4.222 20 N -0.369 5.369 21 C -0.446 4.446 22 H 0.078 0.922 23 C -0.238 4.238 24 N -0.567 5.567 25 Si 0.905 3.095 26 H -0.227 1.227 27 H -0.227 1.227 28 H -0.215 1.215 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.232 0.768 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.193 0.807 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.115 -2.110 7.858 9.611 hybrid contribution 1.107 -0.124 0.468 1.208 sum -4.008 -2.234 8.326 9.507 Atomic orbital electron populations 1.23089 0.79546 1.03748 1.00928 1.86375 1.20071 1.25594 1.87034 1.18984 0.90993 0.84583 0.92314 1.20937 0.99820 0.91445 1.12051 1.20843 0.92641 0.97618 0.96372 1.20361 0.92178 0.87154 1.08399 1.98339 1.81372 1.26860 1.97040 1.20923 1.00083 0.89082 0.90817 1.19187 0.90577 0.93851 1.12713 1.17704 0.82008 0.88163 0.75901 1.90734 1.71818 1.28686 1.50484 1.45862 1.05542 1.09232 1.74702 1.20776 0.91277 0.87712 0.95490 0.89810 1.22207 1.01958 1.00720 0.97147 1.22230 0.95671 1.01595 0.97842 1.20215 0.91412 0.89961 0.91908 0.93298 1.22398 0.98810 0.99251 1.01772 1.42455 1.58286 1.18107 1.18083 1.20008 1.25480 1.04551 0.94565 0.92190 1.25436 1.00673 0.93259 1.04401 1.71089 1.43735 1.36726 1.05120 0.83304 0.76473 0.74993 0.74757 1.22735 1.22676 1.21452 0.92973 0.92772 0.88433 0.84863 0.85178 0.84398 0.76753 0.92888 0.92281 0.92140 0.90694 0.91953 0.94517 0.92842 0.93777 0.80732 0.94033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 101.05 0.99 1.27 16 2 O -0.28 -5.11 8.57 -40.62 -0.35 -5.46 16 3 C 0.18 3.35 6.70 -38.70 -0.26 3.09 16 4 C -0.22 -3.51 9.03 -39.48 -0.36 -3.87 16 5 C -0.06 -0.89 9.81 -39.50 -0.39 -1.28 16 6 C -0.05 -0.99 6.31 -39.56 -0.25 -1.23 16 7 Cl -0.06 -1.14 28.94 -51.86 -1.50 -2.65 16 8 C 0.01 0.22 7.57 -39.16 -0.30 -0.08 16 9 C -0.16 -3.21 5.89 -104.85 -0.62 -3.83 16 10 C 0.57 12.11 7.73 -12.47 -0.10 12.02 16 11 O -0.54 -12.57 14.82 -16.60 -0.25 -12.82 16 12 N -0.70 -12.97 3.75 -54.85 -0.21 -13.18 16 13 C 0.15 2.52 2.57 -67.93 -0.17 2.34 16 14 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 15 C -0.16 -2.24 9.48 37.15 0.35 -1.88 16 16 C -0.13 -2.04 4.43 -26.73 -0.12 -2.16 16 17 C 0.17 3.29 2.89 -67.93 -0.20 3.09 16 18 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 19 C -0.16 -2.82 9.49 37.16 0.35 -2.46 16 20 N -0.73 -16.20 3.84 -53.43 -0.21 -16.41 16 21 C -0.32 -8.23 9.93 -15.06 -0.15 -8.38 16 22 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 23 C -0.04 -1.05 5.50 -17.43 -0.10 -1.15 16 24 N -0.92 -24.03 12.25 55.49 0.68 -23.35 16 25 Si 1.07 25.76 29.92 -169.99 -5.09 20.67 16 26 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.30 -7.12 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H 0.05 0.53 7.66 -51.92 -0.40 0.13 16 30 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.13 1.64 6.30 -52.49 -0.33 1.31 16 33 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.14 2.70 4.75 -52.49 -0.25 2.45 16 35 H 0.40 7.22 4.54 -40.82 -0.19 7.03 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.36 7.97 4.54 -40.82 -0.19 7.79 16 45 H 0.25 6.21 4.77 -40.82 -0.19 6.01 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -30.47 375.59 -8.74 -39.21 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -6.19 Total: 12.83 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.30 Total: -4.52 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.27 Total: -52.94 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.59 Total: -18.28 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.09 Total: 20.67 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.65 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.47 -8.74 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136082176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.740 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds