Wall clock time and date at job start Sat Apr 11 2020 05:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35678 * 116.99923 * 2 1 4 4 C 1.38692 * 120.13867 * 0.02562 * 3 2 1 5 5 C 1.38052 * 120.10292 * 179.97438 * 4 3 2 6 6 C 1.38649 * 120.37225 * 0.02562 * 5 4 3 7 7 Cl 1.73601 * 119.85927 * 180.02562 * 6 5 4 8 8 C 1.37881 * 120.27430 * 359.78351 * 6 5 4 9 9 C 1.39708 * 119.89902 * 0.44481 * 8 6 5 10 10 C 1.47534 * 120.19181 * 179.81282 * 9 8 6 11 11 O 1.21591 * 120.00242 * 179.72202 * 10 9 8 12 12 N 1.34784 * 119.99744 * 359.72290 * 10 9 8 13 13 C 1.46502 * 119.99713 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.47271 * 35.00090 * 13 12 10 15 15 C 1.52993 * 109.47002 * 274.99674 * 13 12 10 16 16 C 1.52998 * 109.46555 * 155.00057 * 13 12 10 17 17 C 1.52998 * 109.47384 * 294.99651 * 16 13 12 18 18 H 1.09003 * 109.47082 * 305.00221 * 17 16 13 19 19 C 1.52995 * 109.47443 * 185.00170 * 17 16 13 20 20 N 1.46498 * 109.47009 * 65.00045 * 17 16 13 21 21 C 1.36935 * 120.00239 * 204.99963 * 20 17 16 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 17 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 17 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09010 * 109.46939 * 299.99616 * 1 2 3 30 30 H 1.08995 * 109.47369 * 59.99734 * 1 2 3 31 31 H 1.08997 * 109.47382 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.95020 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.81776 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.05215 * 180.23872 * 8 6 5 35 35 H 0.96995 * 119.99521 * 359.97438 * 12 10 9 36 36 H 1.09006 * 109.47749 * 300.00516 * 15 13 12 37 37 H 1.09001 * 109.47223 * 60.00644 * 15 13 12 38 38 H 1.09004 * 109.47405 * 180.02562 * 15 13 12 39 39 H 1.08997 * 109.46877 * 175.00041 * 16 13 12 40 40 H 1.08999 * 109.47306 * 55.00192 * 16 13 12 41 41 H 1.09003 * 109.46933 * 60.00266 * 19 17 16 42 42 H 1.09004 * 109.47411 * 179.97438 * 19 17 16 43 43 H 1.08996 * 109.47329 * 300.00343 * 19 17 16 44 44 H 0.97004 * 119.99747 * 25.00702 * 20 17 16 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2923 2.3739 0.0005 5 6 1.9198 3.6036 0.0011 6 6 3.3040 3.6843 0.0005 7 17 4.0792 5.2376 0.0019 8 6 4.0672 2.5360 0.0040 9 6 3.4441 1.2856 -0.0014 10 6 4.2545 0.0528 -0.0019 11 8 3.7086 -1.0337 -0.0015 12 7 5.6001 0.1309 -0.0029 13 6 6.4048 -1.0933 -0.0040 14 1 5.9006 -1.8591 -0.5934 15 6 6.5810 -1.5891 1.4326 16 6 7.7769 -0.8010 -0.6145 17 6 7.6099 -0.4251 -2.0881 18 1 7.0636 -1.2143 -2.6047 19 6 8.9880 -0.2544 -2.7304 20 7 6.8646 0.8320 -2.1900 21 6 6.1549 1.1171 -3.3258 22 1 6.1442 0.4150 -4.1464 23 6 5.4491 2.3085 -3.4226 24 7 5.4577 3.1617 -2.4203 25 14 4.4803 2.6971 -4.9717 26 1 5.3489 3.4293 -5.9281 27 1 4.0144 1.4321 -5.5946 28 1 3.3074 3.5389 -4.6240 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.2138 2.3190 0.0005 33 1 1.3293 4.5078 0.0019 34 1 5.1452 2.6031 0.0074 35 1 6.0355 0.9976 -0.0036 36 1 7.0853 -0.8233 2.0221 37 1 5.6035 -1.7973 1.8676 38 1 7.1802 -2.4997 1.4319 39 1 8.4064 -1.6872 -0.5347 40 1 8.2441 0.0258 -0.0793 41 1 9.5425 -1.1898 -2.6546 42 1 8.8690 0.0129 -3.7804 43 1 9.5344 0.5347 -2.2138 44 1 6.8740 1.4625 -1.4529 45 1 5.9604 2.9598 -1.6157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136082176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:54 Heat of formation + Delta-G solvation = -50.761873 kcal Electronic energy + Delta-G solvation = -29324.949795 eV Core-core repulsion = 25368.829312 eV Total energy + Delta-G solvation = -3956.120483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.58638 -40.23133 -38.52964 -38.29651 -36.87590 -35.89650 -34.28205 -32.85939 -31.37986 -30.84222 -29.88145 -28.09064 -27.65527 -25.45200 -25.17405 -23.20062 -22.41517 -21.77717 -21.24579 -19.47333 -19.20169 -18.18775 -17.64109 -16.91326 -16.71570 -16.65189 -16.36504 -15.94518 -15.62250 -15.59662 -15.34379 -14.72349 -14.58677 -14.45725 -14.35043 -13.99269 -13.54015 -13.40672 -13.35772 -13.08150 -12.90124 -12.85977 -12.68258 -12.65742 -12.51189 -12.22156 -12.16022 -11.89308 -11.78300 -11.71931 -11.58889 -11.47686 -11.03350 -10.81749 -10.71572 -10.09419 -9.84028 -9.02166 -8.79014 -8.06160 -5.00788 -0.12609 0.33663 1.40401 1.58325 1.65591 1.78964 1.94303 2.33761 2.37765 2.75818 2.86632 3.59220 3.64656 3.72582 3.82865 3.92092 4.07691 4.11772 4.23840 4.30496 4.36976 4.40049 4.47756 4.50246 4.63197 4.68703 4.76572 4.78152 4.80375 4.84557 4.85666 5.01048 5.05299 5.07961 5.15142 5.27758 5.32050 5.35460 5.54738 5.55706 5.72954 5.80030 6.40122 6.66410 6.77090 7.32503 7.39945 8.17489 8.32068 9.37885 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008332 B = 0.006225 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3359.729954 B = 4496.704582 C = 5828.890213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.311 6.311 3 C 0.167 3.833 4 C -0.210 4.210 5 C -0.048 4.048 6 C -0.072 4.072 7 Cl -0.064 7.064 8 C 0.006 3.994 9 C -0.191 4.191 10 C 0.565 3.435 11 O -0.573 6.573 12 N -0.694 5.694 13 C 0.147 3.853 14 H 0.054 0.946 15 C -0.150 4.150 16 C -0.120 4.120 17 C 0.168 3.832 18 H 0.023 0.977 19 C -0.151 4.151 20 N -0.729 5.729 21 C -0.327 4.327 22 H 0.037 0.963 23 C -0.074 4.074 24 N -0.924 5.924 25 Si 1.103 2.897 26 H -0.293 1.293 27 H -0.301 1.301 28 H -0.293 1.293 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.174 0.826 33 H 0.164 0.836 34 H 0.127 0.873 35 H 0.396 0.604 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.026 0.974 43 H 0.048 0.952 44 H 0.358 0.642 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 -1.856 9.825 10.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.223 6.223 3 C 0.119 3.881 4 C -0.229 4.229 5 C -0.067 4.067 6 C -0.099 4.099 7 Cl -0.035 7.035 8 C -0.014 4.014 9 C -0.195 4.195 10 C 0.354 3.646 11 O -0.454 6.454 12 N -0.346 5.346 13 C 0.043 3.957 14 H 0.072 0.928 15 C -0.208 4.208 16 C -0.158 4.158 17 C 0.059 3.941 18 H 0.041 0.959 19 C -0.211 4.211 20 N -0.373 5.373 21 C -0.459 4.459 22 H 0.056 0.944 23 C -0.271 4.271 24 N -0.570 5.570 25 Si 0.935 3.065 26 H -0.221 1.221 27 H -0.228 1.228 28 H -0.219 1.219 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.131 0.869 32 H 0.191 0.809 33 H 0.181 0.819 34 H 0.145 0.855 35 H 0.233 0.767 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.106 0.894 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.067 0.933 44 H 0.193 0.807 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.474 -1.751 8.897 10.592 hybrid contribution 1.139 -0.281 0.180 1.187 sum -4.335 -2.032 9.077 10.262 Atomic orbital electron populations 1.23460 0.76650 1.05519 1.02716 1.86335 1.23210 1.25872 1.86884 1.19255 0.90855 0.85805 0.92235 1.21352 1.01615 0.90095 1.09842 1.21272 0.91952 0.99109 0.94339 1.20575 0.93257 0.86857 1.09206 1.98332 1.81587 1.26503 1.97090 1.20805 0.99674 0.89445 0.91482 1.19353 0.91815 0.93658 1.14666 1.18033 0.82785 0.88243 0.75544 1.90689 1.72513 1.29804 1.52438 1.45913 1.05101 1.09942 1.73613 1.20932 0.91335 0.86285 0.97128 0.92789 1.22097 1.01542 1.02338 0.94869 1.22142 0.95304 1.03558 0.94827 1.20393 0.91424 0.87786 0.94475 0.95881 1.22242 0.98002 1.01056 0.99800 1.42422 1.58601 1.19289 1.17005 1.19956 1.26486 1.04188 0.95305 0.94444 1.26122 1.01494 0.93667 1.05825 1.71097 1.44007 1.36682 1.05241 0.82858 0.75656 0.74590 0.73443 1.22106 1.22832 1.21910 0.90387 0.91543 0.86949 0.80897 0.81854 0.85524 0.76658 0.91284 0.94283 0.89390 0.87176 0.90560 0.91219 0.95485 0.93332 0.80748 0.93981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.81 113.37 1.11 1.35 16 2 O -0.31 -11.28 8.57 -69.03 -0.59 -11.87 16 3 C 0.17 6.15 6.70 22.84 0.15 6.30 16 4 C -0.21 -6.10 9.03 22.33 0.20 -5.90 16 5 C -0.05 -1.42 9.81 22.32 0.22 -1.21 16 6 C -0.07 -2.57 6.31 22.28 0.14 -2.43 16 7 Cl -0.06 -2.20 28.94 -2.72 -0.08 -2.27 16 8 C 0.01 0.24 7.57 22.54 0.17 0.41 16 9 C -0.19 -7.86 5.89 -20.01 -0.12 -7.98 16 10 C 0.57 24.70 7.73 86.69 0.67 25.37 16 11 O -0.57 -27.87 14.82 16.93 0.25 -27.62 16 12 N -0.69 -26.34 3.75 -445.71 -1.67 -28.01 16 13 C 0.15 4.86 2.57 44.99 0.12 4.97 16 14 H 0.05 2.11 7.58 -2.39 -0.02 2.09 16 15 C -0.15 -3.95 9.48 71.98 0.68 -3.27 16 16 C -0.12 -3.44 4.43 30.59 0.14 -3.31 16 17 C 0.17 6.31 2.89 44.99 0.13 6.44 16 18 H 0.02 0.98 8.08 -2.39 -0.02 0.96 16 19 C -0.15 -5.08 9.49 71.98 0.68 -4.40 16 20 N -0.73 -33.17 3.84 -322.95 -1.24 -34.41 16 21 C -0.33 -17.58 9.93 84.03 0.83 -16.75 16 22 H 0.04 2.14 7.83 -2.91 -0.02 2.11 16 23 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 24 N -0.92 -48.58 12.25 21.65 0.27 -48.31 16 25 Si 1.10 52.70 29.92 68.60 2.05 54.76 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 28 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 29 H 0.08 1.33 7.66 -2.38 -0.02 1.32 16 30 H 0.07 1.32 7.66 -2.39 -0.02 1.30 16 31 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.17 3.52 6.30 -2.91 -0.02 3.50 16 33 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 34 H 0.13 5.11 4.75 -2.91 -0.01 5.10 16 35 H 0.40 14.81 4.54 -92.71 -0.42 14.39 16 36 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.36 16.18 4.54 -92.71 -0.42 15.76 16 45 H 0.25 12.63 4.77 -92.71 -0.44 12.19 16 Total: -1.00 -68.69 375.59 5.09 -63.60 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: 0.51 Total: 38.06 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 5.60 Total: -3.92 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -2.65 Total: -110.73 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.34 Total: -39.49 kcal Atomic # 14 Polarization: 52.70 SS G_CDS: 2.05 Total: 54.76 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -0.08 Total: -2.27 kcal Total: -68.69 5.09 -63.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136082176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.837 kcal (2) G-P(sol) polarization free energy of solvation -68.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds