Wall clock time and date at job start Sat Apr 11 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47185 * 2 1 4 4 C 1.53003 * 109.46744 * 240.00554 * 2 1 3 5 5 C 1.53004 * 109.46807 * 174.99976 * 4 2 1 6 6 H 1.08995 * 109.47216 * 304.99653 * 5 4 2 7 7 C 1.52999 * 109.47083 * 184.99648 * 5 4 2 8 8 N 1.46498 * 109.47065 * 64.99542 * 5 4 2 9 9 C 1.36943 * 119.99752 * 204.72207 * 8 5 4 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 5 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 5 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 N 1.46494 * 109.47520 * 120.00284 * 2 1 3 18 18 C 1.34778 * 119.99979 * 275.00457 * 17 2 1 19 19 O 1.21284 * 119.99772 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00047 * 179.97438 * 18 17 2 21 21 O 1.42897 * 109.47115 * 179.97438 * 20 18 17 22 22 C 1.35901 * 117.00038 * 180.02562 * 21 20 18 23 23 C 1.38763 * 120.04991 * 359.71603 * 22 21 20 24 24 C 1.38126 * 119.97114 * 179.74708 * 23 22 21 25 25 C 1.38264 * 120.06827 * 0.55999 * 24 23 22 26 26 C 1.38372 * 120.09978 * 359.69768 * 25 24 23 27 27 Cl 1.73596 * 119.98522 * 180.02562 * 26 25 24 28 28 C 1.38283 * 120.02247 * 0.02562 * 26 25 24 29 29 H 1.09002 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46882 * 299.99772 * 1 2 3 31 31 H 1.09000 * 109.47436 * 59.99995 * 1 2 3 32 32 H 1.08993 * 109.47316 * 55.00068 * 4 2 1 33 33 H 1.08998 * 109.46869 * 294.99537 * 4 2 1 34 34 H 1.09003 * 109.47054 * 59.99725 * 7 5 4 35 35 H 1.08996 * 109.47245 * 179.97438 * 7 5 4 36 36 H 1.08995 * 109.47098 * 300.00077 * 7 5 4 37 37 H 0.97001 * 120.00384 * 25.00562 * 8 5 4 38 38 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 39 39 H 0.96999 * 120.00303 * 94.99255 * 17 2 1 40 40 H 1.08998 * 109.47094 * 299.99834 * 20 18 17 41 41 H 1.09004 * 109.47264 * 59.99904 * 20 18 17 42 42 H 1.08006 * 120.01141 * 0.03244 * 23 22 21 43 43 H 1.07996 * 119.96869 * 180.25627 * 24 23 22 44 44 H 1.08000 * 119.95149 * 179.71530 * 25 24 23 45 45 H 1.07998 * 120.02702 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4358 -1.2679 7 6 4.0644 -1.2249 -2.6242 8 7 4.1536 -1.3341 -0.1826 9 6 5.3967 -0.9892 0.2768 10 1 5.9411 -0.1828 -0.1920 11 6 5.9572 -1.6760 1.3450 12 7 5.2939 -2.6592 1.9160 13 14 7.6525 -1.2051 1.9721 14 1 7.6381 0.2096 2.4233 15 1 8.0211 -2.0845 3.1106 16 1 8.6464 -1.3666 0.8807 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8590 1.1585 2.4115 20 6 2.6490 -0.7289 3.5876 21 8 2.6977 0.1894 4.6814 22 6 3.1323 -0.2947 5.8745 23 6 3.4988 -1.6279 5.9916 24 6 3.9453 -2.1169 7.2037 25 6 4.0166 -1.2822 8.3036 26 6 3.6468 0.0465 8.1916 27 17 3.7380 1.0921 9.5743 28 6 3.2046 0.5416 6.9785 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -0.2616 -2.1370 33 1 1.7516 -1.7714 -1.2057 34 1 3.6263 -0.6885 -3.4659 35 1 5.1507 -1.1476 -2.6703 36 1 3.7722 -2.2739 -2.6701 37 1 3.6648 -2.0584 0.2384 38 1 5.6853 -3.1389 2.6627 39 1 2.2491 -1.6318 1.1525 40 1 1.9761 -1.5507 3.8324 41 1 3.6482 -1.1214 3.3985 42 1 3.4393 -2.2818 5.1340 43 1 4.2345 -3.1536 7.2937 44 1 4.3616 -1.6677 9.2517 45 1 2.9163 1.5787 6.8908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146216558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:14 Heat of formation + Delta-G solvation = -46.197789 kcal Electronic energy + Delta-G solvation = -27908.497339 eV Core-core repulsion = 23952.574769 eV Total energy + Delta-G solvation = -3955.922569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.20097 -39.20399 -37.58166 -36.72108 -36.17626 -34.23078 -32.40858 -31.18348 -30.75601 -29.90966 -28.70035 -27.51002 -26.36658 -23.74901 -22.88381 -22.40082 -21.11357 -20.32740 -19.63755 -18.31996 -17.26845 -16.83225 -16.22255 -15.99111 -15.77516 -15.44068 -14.91567 -14.75944 -14.24983 -13.92506 -13.85656 -13.67066 -13.47527 -13.26935 -12.91010 -12.74584 -12.55964 -12.20299 -11.98974 -11.83933 -11.80369 -11.71885 -11.56572 -11.22180 -11.07632 -10.91155 -10.87900 -10.80527 -10.67192 -10.43080 -10.33111 -9.98136 -9.76068 -9.26889 -9.04484 -8.85445 -8.46898 -8.18740 -7.04763 -5.91592 -3.16897 1.14575 1.37211 1.98766 2.96638 3.19530 3.38198 3.42369 3.46225 3.66233 4.09444 4.51400 4.77123 4.99865 5.06710 5.11022 5.15323 5.27324 5.37163 5.39763 5.43511 5.46017 5.47239 5.62482 5.81095 5.82655 5.87235 5.91517 5.95831 6.08755 6.14755 6.18998 6.29892 6.31174 6.35467 6.38476 6.49531 6.54175 6.56502 6.79941 6.98931 7.07306 7.44629 7.61578 8.05810 8.28988 8.77359 9.40891 9.94213 10.30163 11.30993 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.003519 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.569381 B = 7955.758065 C = 9626.554218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.152 3.848 3 H 0.084 0.916 4 C -0.133 4.133 5 C 0.168 3.832 6 H 0.049 0.951 7 C -0.164 4.164 8 N -0.717 5.717 9 C -0.224 4.224 10 H 0.068 0.932 11 C -0.011 4.011 12 N -0.939 5.939 13 Si 0.897 3.103 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.287 1.287 17 N -0.693 5.693 18 C 0.533 3.467 19 O -0.543 6.543 20 C 0.036 3.964 21 O -0.288 6.288 22 C 0.153 3.847 23 C -0.199 4.199 24 C -0.066 4.066 25 C -0.156 4.156 26 C 0.002 3.998 27 Cl -0.071 7.071 28 C -0.149 4.149 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.036 0.964 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.377 0.623 38 H 0.254 0.746 39 H 0.406 0.594 40 H 0.084 0.916 41 H 0.124 0.876 42 H 0.143 0.857 43 H 0.135 0.865 44 H 0.131 0.869 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.143 -0.349 5.441 9.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.048 3.952 3 H 0.102 0.898 4 C -0.172 4.172 5 C 0.058 3.942 6 H 0.067 0.933 7 C -0.224 4.224 8 N -0.360 5.360 9 C -0.355 4.355 10 H 0.086 0.914 11 C -0.206 4.206 12 N -0.589 5.589 13 Si 0.728 3.272 14 H -0.213 1.213 15 H -0.216 1.216 16 H -0.214 1.214 17 N -0.347 5.347 18 C 0.318 3.682 19 O -0.420 6.420 20 C -0.043 4.043 21 O -0.200 6.200 22 C 0.106 3.894 23 C -0.218 4.218 24 C -0.084 4.084 25 C -0.175 4.175 26 C -0.025 4.025 27 Cl -0.042 7.042 28 C -0.168 4.168 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.212 0.788 38 H 0.064 0.936 39 H 0.244 0.756 40 H 0.102 0.898 41 H 0.142 0.858 42 H 0.161 0.839 43 H 0.153 0.847 44 H 0.149 0.851 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.243 0.864 5.573 9.988 hybrid contribution 1.232 -0.713 0.466 1.498 sum -7.011 0.151 6.039 9.254 Atomic orbital electron populations 1.22216 0.96171 1.01691 1.02069 1.20818 0.92516 0.97749 0.84154 0.89791 1.22209 0.97761 1.00662 0.96549 1.20304 0.89729 0.95955 0.88168 0.93324 1.22415 1.01556 1.00357 0.98042 1.42465 1.18507 1.40080 1.34948 1.19206 0.93064 1.12781 1.10436 0.91435 1.24545 0.98398 0.98602 0.99068 1.69577 1.38127 1.24674 1.26561 0.86406 0.84770 0.77750 0.78248 1.21321 1.21635 1.21420 1.45769 1.66162 1.14461 1.08282 1.19685 0.77252 0.87014 0.84218 1.90666 1.50352 1.15750 1.85272 1.22726 1.05418 0.91455 0.84652 1.86097 1.80049 1.38004 1.15809 1.18832 0.93220 0.91801 0.85575 1.21580 1.05085 0.95074 1.00073 1.20902 0.96285 0.99789 0.91406 1.20900 1.04746 0.91810 1.00073 1.20488 1.02347 0.91512 0.88126 1.98359 1.96898 1.66934 1.42058 1.20163 1.06060 1.00976 0.89589 0.92741 0.92364 0.92010 0.90666 0.91644 0.94538 0.92861 0.93582 0.78762 0.93590 0.75644 0.89827 0.85845 0.83942 0.84745 0.85081 0.84173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 2 C 0.15 2.32 2.57 -67.93 -0.17 2.14 16 3 H 0.08 1.48 7.58 -51.93 -0.39 1.08 16 4 C -0.13 -1.86 4.43 -26.73 -0.12 -1.98 16 5 C 0.17 2.96 2.89 -67.93 -0.20 2.76 16 6 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 7 C -0.16 -2.67 9.49 37.16 0.35 -2.32 16 8 N -0.72 -15.22 3.84 -53.43 -0.21 -15.43 16 9 C -0.22 -5.57 9.93 -15.06 -0.15 -5.72 16 10 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 11 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 12 N -0.94 -23.65 12.83 55.49 0.71 -22.94 16 13 Si 0.90 21.35 29.55 -169.99 -5.02 16.32 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 N -0.69 -11.64 3.80 -53.81 -0.20 -11.85 16 18 C 0.53 10.27 7.87 -10.99 -0.09 10.18 16 19 O -0.54 -12.14 16.16 -14.36 -0.23 -12.38 16 20 C 0.04 0.63 5.22 36.00 0.19 0.82 16 21 O -0.29 -5.38 9.67 -39.34 -0.38 -5.76 16 22 C 0.15 2.51 6.69 -39.22 -0.26 2.25 16 23 C -0.20 -2.94 9.04 -39.43 -0.36 -3.30 16 24 C -0.07 -0.83 10.04 -39.61 -0.40 -1.22 16 25 C -0.16 -1.92 9.83 -39.52 -0.39 -2.31 16 26 C 0.00 0.03 6.32 -39.52 -0.25 -0.22 16 27 Cl -0.07 -0.86 28.95 -51.86 -1.50 -2.36 16 28 C -0.15 -2.24 9.77 -39.40 -0.38 -2.63 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.38 8.09 5.70 -40.82 -0.23 7.86 16 38 H 0.25 6.39 8.31 -40.82 -0.34 6.05 16 39 H 0.41 6.71 6.51 -40.82 -0.27 6.44 16 40 H 0.08 1.21 7.65 -51.93 -0.40 0.82 16 41 H 0.12 2.44 7.44 -51.93 -0.39 2.06 16 42 H 0.14 2.05 6.30 -52.48 -0.33 1.72 16 43 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 389.91 15.07 5.88 5.88 Total: -1.00 -28.30 389.91 -9.55 -37.85 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -6.62 Total: 14.34 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.97 Total: -3.67 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.30 Total: -50.22 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.61 Total: -18.14 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.30 -9.55 -37.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146216558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.350 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds