Wall clock time and date at job start Sat Apr 11 2020 05:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47185 * 2 1 4 4 C 1.53003 * 109.46744 * 240.00554 * 2 1 3 5 5 C 1.53004 * 109.46807 * 174.99976 * 4 2 1 6 6 H 1.08995 * 109.47216 * 304.99653 * 5 4 2 7 7 C 1.52999 * 109.47083 * 184.99648 * 5 4 2 8 8 N 1.46498 * 109.47065 * 64.99542 * 5 4 2 9 9 C 1.36943 * 119.99752 * 204.72207 * 8 5 4 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 5 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 5 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47213 * 60.00246 * 13 11 9 15 15 H 1.48502 * 109.47317 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47081 * 299.99875 * 13 11 9 17 17 N 1.46494 * 109.47520 * 120.00284 * 2 1 3 18 18 C 1.34778 * 119.99979 * 275.00457 * 17 2 1 19 19 O 1.21284 * 119.99772 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00047 * 179.97438 * 18 17 2 21 21 O 1.42897 * 109.47115 * 179.97438 * 20 18 17 22 22 C 1.35901 * 117.00038 * 180.02562 * 21 20 18 23 23 C 1.38763 * 120.04991 * 359.71603 * 22 21 20 24 24 C 1.38126 * 119.97114 * 179.74708 * 23 22 21 25 25 C 1.38264 * 120.06827 * 0.55999 * 24 23 22 26 26 C 1.38372 * 120.09978 * 359.69768 * 25 24 23 27 27 Cl 1.73596 * 119.98522 * 180.02562 * 26 25 24 28 28 C 1.38283 * 120.02247 * 0.02562 * 26 25 24 29 29 H 1.09002 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46882 * 299.99772 * 1 2 3 31 31 H 1.09000 * 109.47436 * 59.99995 * 1 2 3 32 32 H 1.08993 * 109.47316 * 55.00068 * 4 2 1 33 33 H 1.08998 * 109.46869 * 294.99537 * 4 2 1 34 34 H 1.09003 * 109.47054 * 59.99725 * 7 5 4 35 35 H 1.08996 * 109.47245 * 179.97438 * 7 5 4 36 36 H 1.08995 * 109.47098 * 300.00077 * 7 5 4 37 37 H 0.97001 * 120.00384 * 25.00562 * 8 5 4 38 38 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 39 39 H 0.96999 * 120.00303 * 94.99255 * 17 2 1 40 40 H 1.08998 * 109.47094 * 299.99834 * 20 18 17 41 41 H 1.09004 * 109.47264 * 59.99904 * 20 18 17 42 42 H 1.08006 * 120.01141 * 0.03244 * 23 22 21 43 43 H 1.07996 * 119.96869 * 180.25627 * 24 23 22 44 44 H 1.08000 * 119.95149 * 179.71530 * 25 24 23 45 45 H 1.07998 * 120.02702 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4358 -1.2679 7 6 4.0644 -1.2249 -2.6242 8 7 4.1536 -1.3341 -0.1826 9 6 5.3967 -0.9892 0.2768 10 1 5.9411 -0.1828 -0.1920 11 6 5.9572 -1.6760 1.3450 12 7 5.2939 -2.6592 1.9160 13 14 7.6525 -1.2051 1.9721 14 1 7.6381 0.2096 2.4233 15 1 8.0211 -2.0845 3.1106 16 1 8.6464 -1.3666 0.8807 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8590 1.1585 2.4115 20 6 2.6490 -0.7289 3.5876 21 8 2.6977 0.1894 4.6814 22 6 3.1323 -0.2947 5.8745 23 6 3.4988 -1.6279 5.9916 24 6 3.9453 -2.1169 7.2037 25 6 4.0166 -1.2822 8.3036 26 6 3.6468 0.0465 8.1916 27 17 3.7380 1.0921 9.5743 28 6 3.2046 0.5416 6.9785 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -0.2616 -2.1370 33 1 1.7516 -1.7714 -1.2057 34 1 3.6263 -0.6885 -3.4659 35 1 5.1507 -1.1476 -2.6703 36 1 3.7722 -2.2739 -2.6701 37 1 3.6648 -2.0584 0.2384 38 1 5.6853 -3.1389 2.6627 39 1 2.2491 -1.6318 1.1525 40 1 1.9761 -1.5507 3.8324 41 1 3.6482 -1.1214 3.3985 42 1 3.4393 -2.2818 5.1340 43 1 4.2345 -3.1536 7.2937 44 1 4.3616 -1.6677 9.2517 45 1 2.9163 1.5787 6.8908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146216558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:13 Heat of formation + Delta-G solvation = -60.439156 kcal Electronic energy + Delta-G solvation = -27909.114891 eV Core-core repulsion = 23952.574769 eV Total energy + Delta-G solvation = -3956.540122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.47959 -40.55309 -38.79189 -38.12922 -37.26478 -35.79045 -34.08209 -32.51792 -31.97002 -31.05709 -30.30674 -28.81980 -27.57195 -25.57349 -24.00859 -23.56141 -22.37802 -21.72080 -21.09130 -19.54588 -19.10019 -18.18251 -17.51831 -17.32530 -16.97895 -16.74223 -16.53175 -15.92350 -15.71585 -15.51597 -15.35781 -14.96934 -14.65917 -14.44544 -14.28934 -14.09948 -13.86855 -13.58482 -13.32173 -13.24087 -12.90434 -12.84879 -12.79040 -12.73436 -12.60758 -12.31741 -12.28271 -12.18317 -11.95211 -11.89142 -11.71345 -11.59938 -11.40429 -10.88518 -10.79588 -9.93804 -9.89988 -9.34694 -8.82771 -7.87364 -5.08382 0.05533 0.27353 0.93398 1.44321 1.47951 1.50855 1.60201 1.77190 2.56788 2.58708 2.78831 3.46063 3.63000 3.76558 3.89362 3.96739 4.03448 4.07153 4.09538 4.18758 4.23781 4.36959 4.39159 4.41699 4.58409 4.69802 4.74294 4.84775 4.89058 4.93040 5.08752 5.09099 5.15117 5.16919 5.21909 5.32007 5.37751 5.42978 5.50198 5.60708 5.63872 5.73594 6.20932 6.37411 6.64150 7.31719 7.46362 8.17195 8.45887 9.34000 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.003519 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.569381 B = 7955.758065 C = 9626.554218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.147 3.853 3 H 0.055 0.945 4 C -0.119 4.119 5 C 0.160 3.840 6 H 0.028 0.972 7 C -0.154 4.154 8 N -0.719 5.719 9 C -0.227 4.227 10 H 0.053 0.947 11 C -0.045 4.045 12 N -0.941 5.941 13 Si 0.932 3.068 14 H -0.300 1.300 15 H -0.291 1.291 16 H -0.288 1.288 17 N -0.682 5.682 18 C 0.525 3.475 19 O -0.583 6.583 20 C 0.045 3.955 21 O -0.314 6.314 22 C 0.124 3.876 23 C -0.207 4.207 24 C -0.062 4.062 25 C -0.147 4.147 26 C -0.003 4.003 27 Cl -0.058 7.058 28 C -0.162 4.162 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.049 0.951 37 H 0.377 0.623 38 H 0.252 0.748 39 H 0.409 0.591 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.142 0.858 43 H 0.166 0.834 44 H 0.161 0.839 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.998 -1.839 5.336 10.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.073 0.927 4 C -0.157 4.157 5 C 0.052 3.948 6 H 0.046 0.954 7 C -0.214 4.214 8 N -0.362 5.362 9 C -0.359 4.359 10 H 0.071 0.929 11 C -0.239 4.239 12 N -0.592 5.592 13 Si 0.765 3.235 14 H -0.228 1.228 15 H -0.216 1.216 16 H -0.215 1.215 17 N -0.335 5.335 18 C 0.311 3.689 19 O -0.463 6.463 20 C -0.033 4.033 21 O -0.227 6.227 22 C 0.078 3.922 23 C -0.226 4.226 24 C -0.080 4.080 25 C -0.165 4.165 26 C -0.030 4.030 27 Cl -0.029 7.029 28 C -0.182 4.182 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.128 0.872 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.212 0.788 38 H 0.061 0.939 39 H 0.247 0.753 40 H 0.130 0.870 41 H 0.120 0.880 42 H 0.160 0.840 43 H 0.183 0.817 44 H 0.179 0.821 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.105 -0.647 5.433 10.622 hybrid contribution 1.523 -0.207 0.520 1.623 sum -7.582 -0.854 5.953 9.678 Atomic orbital electron populations 1.22116 0.93658 1.02950 1.02333 1.20983 0.94427 0.96246 0.84048 0.92686 1.22127 0.94683 1.01773 0.97089 1.20510 0.92256 0.94402 0.87639 0.95426 1.22269 1.00021 1.00913 0.98174 1.42491 1.17440 1.40279 1.35993 1.19278 0.94384 1.12048 1.10240 0.92853 1.24875 0.99918 0.99359 0.99767 1.69609 1.38234 1.24823 1.26570 0.85859 0.83412 0.76554 0.77711 1.22821 1.21644 1.21525 1.45816 1.65084 1.14435 1.08185 1.20058 0.76942 0.86687 0.85255 1.90633 1.52400 1.17355 1.85959 1.22604 1.04621 0.91833 0.84212 1.86050 1.80931 1.38997 1.16733 1.19099 0.94997 0.92982 0.85120 1.21699 1.05431 0.94350 1.01138 1.21277 0.94977 1.01281 0.90418 1.21282 1.03044 0.91039 1.01175 1.20627 1.02004 0.92370 0.87977 1.98362 1.96797 1.66719 1.41006 1.20265 1.06826 1.00886 0.90188 0.90903 0.94379 0.89505 0.87232 0.90078 0.91316 0.95368 0.93148 0.78836 0.93908 0.75315 0.86954 0.88018 0.84046 0.81688 0.82124 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.48 71.98 0.68 -2.88 16 2 C 0.15 4.33 2.57 44.99 0.12 4.45 16 3 H 0.05 1.96 7.58 -2.39 -0.02 1.94 16 4 C -0.12 -3.00 4.43 30.60 0.14 -2.87 16 5 C 0.16 5.48 2.89 44.99 0.13 5.61 16 6 H 0.03 1.06 8.08 -2.39 -0.02 1.04 16 7 C -0.15 -4.73 9.49 71.98 0.68 -4.05 16 8 N -0.72 -30.41 3.84 -322.94 -1.24 -31.65 16 9 C -0.23 -11.46 9.93 84.03 0.83 -10.63 16 10 H 0.05 2.80 7.83 -2.91 -0.02 2.78 16 11 C -0.05 -2.32 5.50 84.86 0.47 -1.85 16 12 N -0.94 -47.38 12.83 21.65 0.28 -47.10 16 13 Si 0.93 44.28 29.55 68.60 2.03 46.31 16 14 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 15 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 16 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 17 N -0.68 -22.93 3.80 -442.53 -1.68 -24.61 16 18 C 0.52 20.83 7.87 87.66 0.69 21.52 16 19 O -0.58 -27.23 16.16 16.00 0.26 -26.97 16 20 C 0.05 1.65 5.22 71.24 0.37 2.02 16 21 O -0.31 -12.31 9.67 -73.40 -0.71 -13.02 16 22 C 0.12 4.18 6.69 22.50 0.15 4.33 16 23 C -0.21 -6.05 9.04 22.37 0.20 -5.85 16 24 C -0.06 -1.43 10.04 22.25 0.22 -1.20 16 25 C -0.15 -3.28 9.83 22.31 0.22 -3.06 16 26 C 0.00 -0.08 6.32 22.31 0.14 0.06 16 27 Cl -0.06 -1.31 28.95 -2.72 -0.08 -1.39 16 28 C -0.16 -5.00 9.77 22.39 0.22 -4.78 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.11 2.10 8.14 -2.39 -0.02 2.09 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.38 15.93 5.70 -92.71 -0.53 15.40 16 38 H 0.25 12.58 8.31 -92.71 -0.77 11.81 16 39 H 0.41 13.29 6.51 -92.71 -0.60 12.68 16 40 H 0.11 3.30 7.65 -2.39 -0.02 3.28 16 41 H 0.10 4.17 7.44 -2.38 -0.02 4.15 16 42 H 0.14 4.07 6.30 -2.91 -0.02 4.05 16 43 H 0.17 2.78 8.06 -2.91 -0.02 2.75 16 44 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 45 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -62.96 389.91 3.99 -58.96 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -0.12 Total: 38.64 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 5.26 Total: 0.83 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -2.65 Total: -103.36 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -0.45 Total: -39.99 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -62.96 3.99 -58.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146216558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.477 kcal (2) G-P(sol) polarization free energy of solvation -62.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds