Wall clock time and date at job start Sat Apr 11 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47033 * 2 1 4 4 C 1.52995 * 109.47139 * 119.99932 * 2 1 3 5 5 C 1.53005 * 109.47120 * 185.00232 * 4 2 1 6 6 H 1.09005 * 109.46701 * 304.99729 * 5 4 2 7 7 C 1.53000 * 109.47246 * 185.00280 * 5 4 2 8 8 N 1.46496 * 109.47443 * 64.99700 * 5 4 2 9 9 C 1.34779 * 120.00103 * 205.00405 * 8 5 4 10 10 O 1.21279 * 119.99839 * 359.97438 * 9 8 5 11 11 C 1.50701 * 119.99672 * 180.02562 * 9 8 5 12 12 O 1.42904 * 109.46662 * 179.97438 * 11 9 8 13 13 C 1.35901 * 116.99568 * 179.97438 * 12 11 9 14 14 C 1.38764 * 120.05134 * 359.97438 * 13 12 11 15 15 C 1.38129 * 119.96993 * 179.97438 * 14 13 12 16 16 C 1.38270 * 120.06752 * 0.03933 * 15 14 13 17 17 C 1.38358 * 120.10073 * 359.97438 * 16 15 14 18 18 Cl 1.73603 * 119.98689 * 180.02562 * 17 16 15 19 19 C 1.38285 * 120.03017 * 359.97438 * 17 16 15 20 20 N 1.46501 * 109.47050 * 240.00041 * 2 1 3 21 21 C 1.36945 * 119.99871 * 84.99959 * 20 2 1 22 22 H 1.07997 * 120.00095 * 359.97438 * 21 20 2 23 23 C 1.38807 * 119.99559 * 180.02562 * 21 20 2 24 24 N 1.31622 * 120.00262 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99875 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47150 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47027 * 120.00112 * 25 23 21 28 28 H 1.48500 * 109.47494 * 240.00100 * 25 23 21 29 29 H 1.09003 * 109.47231 * 300.00296 * 1 2 3 30 30 H 1.08997 * 109.47036 * 59.99658 * 1 2 3 31 31 H 1.08997 * 109.47002 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47527 * 64.99932 * 4 2 1 33 33 H 1.08998 * 109.47370 * 304.99561 * 4 2 1 34 34 H 1.09005 * 109.46821 * 299.99375 * 7 5 4 35 35 H 1.09003 * 109.47411 * 59.99303 * 7 5 4 36 36 H 1.08997 * 109.46887 * 179.97438 * 7 5 4 37 37 H 0.97000 * 120.00101 * 25.00537 * 8 5 4 38 38 H 1.08996 * 109.47560 * 59.99671 * 11 9 8 39 39 H 1.08997 * 109.46916 * 299.99529 * 11 9 8 40 40 H 1.07998 * 120.01650 * 0.02562 * 14 13 12 41 41 H 1.08001 * 119.96696 * 180.02562 * 15 14 13 42 42 H 1.08000 * 119.94792 * 179.97438 * 16 15 14 43 43 H 1.07998 * 120.03680 * 179.73116 * 19 17 16 44 44 H 0.96997 * 119.99868 * 264.99548 * 20 2 1 45 45 H 0.97000 * 119.99960 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4382 2.4924 8 7 3.9480 0.7894 1.4924 9 6 5.1612 1.2136 1.0865 10 8 5.9359 0.4339 0.5739 11 6 5.5555 2.6564 1.2709 12 8 6.8772 2.8572 0.7662 13 6 7.3877 4.1134 0.8561 14 6 6.6316 5.1322 1.4183 15 6 7.1523 6.4083 1.5093 16 6 8.4260 6.6719 1.0401 17 6 9.1823 5.6584 0.4788 18 17 10.7814 5.9925 -0.1087 19 6 8.6654 4.3791 0.3866 20 7 2.0183 -0.6906 -1.1962 21 6 2.1491 -0.0074 -2.3758 22 1 1.8918 1.0404 -2.4244 23 6 2.6112 -0.6619 -3.5093 24 7 2.9243 -1.9390 -3.4502 25 14 2.7890 0.2697 -5.1186 26 1 2.3753 1.6822 -4.9211 27 1 4.2057 0.2267 -5.5616 28 1 1.9278 -0.3589 -6.1523 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7517 -1.7714 1.2056 33 1 1.6055 -0.2617 2.1369 34 1 3.6547 -1.0592 3.4193 35 1 3.8001 -2.4819 2.3595 36 1 5.1715 -1.3616 2.5380 37 1 3.3285 1.4129 1.9028 38 1 5.5298 2.9075 2.3313 39 1 4.8583 3.2956 0.7293 40 1 5.6368 4.9272 1.7852 41 1 6.5640 7.2010 1.9472 42 1 8.8311 7.6705 1.1119 43 1 9.2540 3.5888 -0.0555 44 1 2.2490 -1.6317 -1.1526 45 1 3.2469 -2.3965 -4.2423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146216559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:17 Heat of formation + Delta-G solvation = -50.057389 kcal Electronic energy + Delta-G solvation = -26889.080787 eV Core-core repulsion = 22932.990852 eV Total energy + Delta-G solvation = -3956.089934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.60761 -39.47110 -37.87436 -36.80839 -36.43646 -34.48162 -32.25395 -31.50777 -30.96552 -30.23379 -28.62851 -27.99319 -26.34113 -23.63586 -23.22183 -22.73364 -21.31390 -20.37049 -19.75517 -18.74301 -17.45421 -17.01889 -16.53414 -16.47646 -16.07045 -15.65518 -15.14325 -14.79266 -14.48485 -14.10790 -13.96081 -13.87415 -13.71330 -13.45014 -13.02732 -12.95900 -12.72155 -12.21290 -12.18755 -12.06870 -11.91987 -11.75526 -11.64737 -11.53037 -11.19928 -11.15854 -11.03659 -10.82919 -10.62376 -10.45916 -10.21449 -9.89680 -9.63137 -9.59786 -9.17926 -8.87874 -8.80714 -8.56641 -6.91664 -5.72298 -3.00539 0.79514 1.02693 1.72884 2.56402 2.78117 3.30787 3.46645 3.51425 3.54503 3.66443 4.37675 4.62682 4.63032 4.64842 4.77010 4.80051 4.91998 4.96316 5.08559 5.10695 5.37206 5.45382 5.48728 5.61692 5.65835 5.81494 5.85547 5.90990 5.94733 5.98042 5.98824 6.10065 6.17998 6.26336 6.32727 6.40748 6.53860 6.66110 6.75159 6.88091 7.03582 7.05945 7.66172 7.72988 8.41333 8.46056 9.57504 10.14361 10.48210 11.50434 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010124 B = 0.002749 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.144911 B =10182.039109 C =11707.803028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.146 3.854 6 H 0.107 0.893 7 C -0.162 4.162 8 N -0.712 5.712 9 C 0.515 3.485 10 O -0.507 6.507 11 C 0.041 3.959 12 O -0.281 6.281 13 C 0.149 3.851 14 C -0.208 4.208 15 C -0.066 4.066 16 C -0.153 4.153 17 C 0.005 3.995 18 Cl -0.064 7.064 19 C -0.143 4.143 20 N -0.721 5.721 21 C -0.236 4.236 22 H 0.067 0.933 23 C -0.011 4.011 24 N -0.930 5.930 25 Si 0.902 3.098 26 H -0.282 1.282 27 H -0.291 1.291 28 H -0.292 1.292 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.395 0.605 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.144 0.856 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.009 15.457 16.876 23.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.042 3.958 6 H 0.125 0.875 7 C -0.220 4.220 8 N -0.366 5.366 9 C 0.299 3.701 10 O -0.381 6.381 11 C -0.038 4.038 12 O -0.193 6.193 13 C 0.102 3.898 14 C -0.227 4.227 15 C -0.084 4.084 16 C -0.172 4.172 17 C -0.022 4.022 18 Cl -0.035 7.035 19 C -0.163 4.163 20 N -0.362 5.362 21 C -0.367 4.367 22 H 0.085 0.915 23 C -0.207 4.207 24 N -0.578 5.578 25 Si 0.734 3.266 26 H -0.207 1.207 27 H -0.218 1.218 28 H -0.219 1.219 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.228 0.772 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.162 0.838 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.837 14.833 16.210 23.011 hybrid contribution -0.295 0.646 -0.759 1.040 sum 6.542 15.479 15.450 22.828 Atomic orbital electron populations 1.22462 0.99528 1.00845 0.99748 1.20221 0.91594 0.95473 0.86585 0.93731 1.22176 0.93529 1.02382 0.98857 1.21069 0.95206 0.79463 1.00051 0.87491 1.22192 1.01567 1.00302 0.97935 1.45790 1.15811 1.12022 1.62928 1.19780 0.82713 0.88573 0.79082 1.90791 1.50632 1.55723 1.40920 1.22580 0.83909 0.96882 1.00433 1.86210 1.30250 1.25468 1.77384 1.18839 0.92470 0.84016 0.94435 1.21405 1.01488 0.93716 1.06069 1.20886 0.94432 0.96161 0.96968 1.20949 0.94973 0.98950 1.02310 1.20557 0.87496 0.94136 0.99983 1.98383 1.22703 1.95358 1.87020 1.20256 0.94601 0.96442 1.04960 1.42405 1.77981 1.10579 1.05269 1.19174 1.36535 0.93663 0.87325 0.91497 1.24699 1.02109 0.95936 0.97980 1.69653 1.50862 1.08614 1.28700 0.86196 0.77387 0.78739 0.84326 1.20715 1.21846 1.21946 0.94743 0.92901 0.93504 0.90468 0.91987 0.93085 0.91576 0.92482 0.77178 0.89115 0.88699 0.84659 0.84677 0.84821 0.83786 0.78328 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.49 37.16 0.35 -2.42 16 2 C 0.17 3.10 2.84 -67.93 -0.19 2.91 16 3 H 0.04 0.81 7.56 -51.93 -0.39 0.42 16 4 C -0.13 -1.87 4.29 -26.73 -0.11 -1.99 16 5 C 0.15 2.23 2.52 -67.93 -0.17 2.06 16 6 H 0.11 2.22 7.06 -51.93 -0.37 1.86 16 7 C -0.16 -2.11 9.48 37.16 0.35 -1.75 16 8 N -0.71 -9.44 4.45 -53.80 -0.24 -9.68 16 9 C 0.52 8.07 7.87 -10.98 -0.09 7.98 16 10 O -0.51 -10.78 16.16 -14.35 -0.23 -11.01 16 11 C 0.04 0.47 5.22 36.01 0.19 0.65 16 12 O -0.28 -4.07 9.67 -39.34 -0.38 -4.45 16 13 C 0.15 1.80 6.69 -39.22 -0.26 1.53 16 14 C -0.21 -1.90 9.04 -39.43 -0.36 -2.26 16 15 C -0.07 -0.52 10.04 -39.61 -0.40 -0.92 16 16 C -0.15 -1.32 9.83 -39.53 -0.39 -1.71 16 17 C 0.01 0.05 6.32 -39.52 -0.25 -0.20 16 18 Cl -0.06 -0.63 28.95 -51.86 -1.50 -2.13 16 19 C -0.14 -1.71 9.77 -39.40 -0.38 -2.09 16 20 N -0.72 -17.34 4.49 -53.43 -0.24 -17.58 16 21 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 25 Si 0.90 22.96 29.55 -169.99 -5.02 17.93 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.39 3.74 8.60 -40.82 -0.35 3.39 16 38 H 0.09 0.69 7.66 -51.93 -0.40 0.30 16 39 H 0.10 0.90 7.66 -51.93 -0.40 0.51 16 40 H 0.14 0.91 6.30 -52.49 -0.33 0.58 16 41 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 45 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 394.56 15.07 5.95 5.95 Total: -1.00 -34.77 394.56 -9.65 -44.43 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.75 Total: 9.48 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.96 Total: -5.25 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.25 Total: -54.96 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.61 Total: -15.45 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.77 -9.65 -44.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146216559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.631 kcal (2) G-P(sol) polarization free energy of solvation -34.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds