Wall clock time and date at job start Sat Apr 11 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47033 * 2 1 4 4 C 1.52995 * 109.47139 * 119.99932 * 2 1 3 5 5 C 1.53005 * 109.47120 * 185.00232 * 4 2 1 6 6 H 1.09005 * 109.46701 * 304.99729 * 5 4 2 7 7 C 1.53000 * 109.47246 * 185.00280 * 5 4 2 8 8 N 1.46496 * 109.47443 * 64.99700 * 5 4 2 9 9 C 1.34779 * 120.00103 * 205.00405 * 8 5 4 10 10 O 1.21279 * 119.99839 * 359.97438 * 9 8 5 11 11 C 1.50701 * 119.99672 * 180.02562 * 9 8 5 12 12 O 1.42904 * 109.46662 * 179.97438 * 11 9 8 13 13 C 1.35901 * 116.99568 * 179.97438 * 12 11 9 14 14 C 1.38764 * 120.05134 * 359.97438 * 13 12 11 15 15 C 1.38129 * 119.96993 * 179.97438 * 14 13 12 16 16 C 1.38270 * 120.06752 * 0.03933 * 15 14 13 17 17 C 1.38358 * 120.10073 * 359.97438 * 16 15 14 18 18 Cl 1.73603 * 119.98689 * 180.02562 * 17 16 15 19 19 C 1.38285 * 120.03017 * 359.97438 * 17 16 15 20 20 N 1.46501 * 109.47050 * 240.00041 * 2 1 3 21 21 C 1.36945 * 119.99871 * 84.99959 * 20 2 1 22 22 H 1.07997 * 120.00095 * 359.97438 * 21 20 2 23 23 C 1.38807 * 119.99559 * 180.02562 * 21 20 2 24 24 N 1.31622 * 120.00262 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99875 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47150 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47027 * 120.00112 * 25 23 21 28 28 H 1.48500 * 109.47494 * 240.00100 * 25 23 21 29 29 H 1.09003 * 109.47231 * 300.00296 * 1 2 3 30 30 H 1.08997 * 109.47036 * 59.99658 * 1 2 3 31 31 H 1.08997 * 109.47002 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47527 * 64.99932 * 4 2 1 33 33 H 1.08998 * 109.47370 * 304.99561 * 4 2 1 34 34 H 1.09005 * 109.46821 * 299.99375 * 7 5 4 35 35 H 1.09003 * 109.47411 * 59.99303 * 7 5 4 36 36 H 1.08997 * 109.46887 * 179.97438 * 7 5 4 37 37 H 0.97000 * 120.00101 * 25.00537 * 8 5 4 38 38 H 1.08996 * 109.47560 * 59.99671 * 11 9 8 39 39 H 1.08997 * 109.46916 * 299.99529 * 11 9 8 40 40 H 1.07998 * 120.01650 * 0.02562 * 14 13 12 41 41 H 1.08001 * 119.96696 * 180.02562 * 15 14 13 42 42 H 1.08000 * 119.94792 * 179.97438 * 16 15 14 43 43 H 1.07998 * 120.03680 * 179.73116 * 19 17 16 44 44 H 0.96997 * 119.99868 * 264.99548 * 20 2 1 45 45 H 0.97000 * 119.99960 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4382 2.4924 8 7 3.9480 0.7894 1.4924 9 6 5.1612 1.2136 1.0865 10 8 5.9359 0.4339 0.5739 11 6 5.5555 2.6564 1.2709 12 8 6.8772 2.8572 0.7662 13 6 7.3877 4.1134 0.8561 14 6 6.6316 5.1322 1.4183 15 6 7.1523 6.4083 1.5093 16 6 8.4260 6.6719 1.0401 17 6 9.1823 5.6584 0.4788 18 17 10.7814 5.9925 -0.1087 19 6 8.6654 4.3791 0.3866 20 7 2.0183 -0.6906 -1.1962 21 6 2.1491 -0.0074 -2.3758 22 1 1.8918 1.0404 -2.4244 23 6 2.6112 -0.6619 -3.5093 24 7 2.9243 -1.9390 -3.4502 25 14 2.7890 0.2697 -5.1186 26 1 2.3753 1.6822 -4.9211 27 1 4.2057 0.2267 -5.5616 28 1 1.9278 -0.3589 -6.1523 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7517 -1.7714 1.2056 33 1 1.6055 -0.2617 2.1369 34 1 3.6547 -1.0592 3.4193 35 1 3.8001 -2.4819 2.3595 36 1 5.1715 -1.3616 2.5380 37 1 3.3285 1.4129 1.9028 38 1 5.5298 2.9075 2.3313 39 1 4.8583 3.2956 0.7293 40 1 5.6368 4.9272 1.7852 41 1 6.5640 7.2010 1.9472 42 1 8.8311 7.6705 1.1119 43 1 9.2540 3.5888 -0.0555 44 1 2.2490 -1.6317 -1.1526 45 1 3.2469 -2.3965 -4.2423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146216559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:16 Heat of formation + Delta-G solvation = -72.706539 kcal Electronic energy + Delta-G solvation = -26890.062928 eV Core-core repulsion = 22932.990852 eV Total energy + Delta-G solvation = -3957.072075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52368 -40.57623 -38.78396 -38.14162 -37.25993 -36.04966 -34.04301 -32.58975 -31.93593 -31.03121 -30.42476 -28.92337 -27.56694 -25.66437 -24.00571 -23.57046 -22.43546 -21.60853 -21.18559 -19.57025 -19.28759 -18.28101 -17.50418 -17.38132 -16.97122 -16.81858 -16.45549 -15.94675 -15.70182 -15.61138 -15.41245 -15.00733 -14.64098 -14.51473 -14.38210 -14.14152 -13.94799 -13.59636 -13.35958 -13.18754 -12.96258 -12.82928 -12.80271 -12.78240 -12.65156 -12.31841 -12.22336 -12.14892 -11.94967 -11.90076 -11.81561 -11.55009 -11.40305 -10.93826 -10.85934 -10.03155 -9.91903 -9.34143 -8.94086 -7.92386 -5.17229 0.07116 0.28861 0.96451 1.41340 1.44126 1.51616 1.56943 1.66652 2.55773 2.58755 2.69336 3.42906 3.58171 3.78070 3.85923 3.94952 4.03292 4.06231 4.10634 4.11701 4.16808 4.25313 4.40220 4.42538 4.56444 4.70542 4.75741 4.81530 4.84882 4.96736 5.05756 5.10617 5.13182 5.23433 5.24275 5.30987 5.36579 5.43809 5.51643 5.53394 5.63970 5.67281 6.23321 6.31387 6.61417 7.31913 7.36981 8.18474 8.36472 9.31769 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010124 B = 0.002749 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.144911 B =10182.039109 C =11707.803028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.162 3.838 3 H 0.048 0.952 4 C -0.117 4.117 5 C 0.147 3.853 6 H 0.043 0.957 7 C -0.152 4.152 8 N -0.695 5.695 9 C 0.505 3.495 10 O -0.579 6.579 11 C 0.045 3.955 12 O -0.322 6.322 13 C 0.125 3.875 14 C -0.202 4.202 15 C -0.058 4.058 16 C -0.150 4.150 17 C -0.006 4.006 18 Cl -0.067 7.067 19 C -0.171 4.171 20 N -0.733 5.733 21 C -0.221 4.221 22 H 0.073 0.927 23 C -0.081 4.081 24 N -0.970 5.970 25 Si 0.958 3.042 26 H -0.264 1.264 27 H -0.305 1.305 28 H -0.292 1.292 29 H 0.079 0.921 30 H 0.028 0.972 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.418 0.582 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.166 0.834 41 H 0.175 0.825 42 H 0.157 0.843 43 H 0.124 0.876 44 H 0.369 0.631 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.724 18.887 19.859 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.066 0.934 4 C -0.155 4.155 5 C 0.043 3.957 6 H 0.061 0.939 7 C -0.210 4.210 8 N -0.349 5.349 9 C 0.291 3.709 10 O -0.457 6.457 11 C -0.032 4.032 12 O -0.236 6.236 13 C 0.080 3.920 14 C -0.220 4.220 15 C -0.075 4.075 16 C -0.169 4.169 17 C -0.033 4.033 18 Cl -0.038 7.038 19 C -0.190 4.190 20 N -0.373 5.373 21 C -0.353 4.353 22 H 0.091 0.909 23 C -0.273 4.273 24 N -0.622 5.622 25 Si 0.789 3.211 26 H -0.188 1.188 27 H -0.233 1.233 28 H -0.220 1.220 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.256 0.744 38 H 0.155 0.845 39 H 0.137 0.863 40 H 0.183 0.817 41 H 0.192 0.808 42 H 0.174 0.826 43 H 0.142 0.858 44 H 0.200 0.800 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.478 18.345 19.259 26.972 hybrid contribution 0.387 -0.339 -1.575 1.656 sum 4.865 18.005 17.684 25.702 Atomic orbital electron populations 1.22310 0.97706 1.00790 1.00820 1.20570 0.92653 0.95472 0.85908 0.93383 1.22082 0.92398 1.02298 0.98729 1.20837 0.95782 0.80818 0.98289 0.93859 1.22089 1.00264 1.00275 0.98370 1.45626 1.15600 1.11725 1.61985 1.20684 0.82462 0.90128 0.77675 1.90765 1.52775 1.57989 1.44192 1.22718 0.83407 0.93675 1.03432 1.86149 1.31675 1.27239 1.78487 1.19043 0.92891 0.84018 0.96086 1.21760 1.02300 0.93252 1.04715 1.21366 0.94072 0.96561 0.95542 1.21330 0.95220 0.99335 1.01001 1.20694 0.87734 0.94118 1.00710 1.98376 1.22997 1.95261 1.87155 1.20299 0.95344 0.96922 1.06480 1.42649 1.78163 1.10116 1.06386 1.19552 1.33571 0.93847 0.88379 0.90920 1.25434 1.03768 0.96830 1.01236 1.69804 1.53308 1.10151 1.28908 0.85273 0.76326 0.78560 0.80929 1.18790 1.23273 1.21968 0.90209 0.95225 0.94161 0.90752 0.86947 0.89414 0.91380 0.94636 0.74404 0.84511 0.86288 0.81663 0.80774 0.82577 0.85771 0.79971 0.94503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.78 9.49 71.98 0.68 -4.10 16 2 C 0.16 5.54 2.84 44.99 0.13 5.67 16 3 H 0.05 1.62 7.56 -2.38 -0.02 1.60 16 4 C -0.12 -3.02 4.29 30.59 0.13 -2.89 16 5 C 0.15 4.43 2.52 44.99 0.11 4.54 16 6 H 0.04 1.90 7.06 -2.38 -0.02 1.88 16 7 C -0.15 -3.78 9.48 71.98 0.68 -3.10 16 8 N -0.70 -17.19 4.45 -442.52 -1.97 -19.15 16 9 C 0.50 15.76 7.87 87.66 0.69 16.45 16 10 O -0.58 -26.15 16.16 16.01 0.26 -25.90 16 11 C 0.05 0.95 5.22 71.24 0.37 1.32 16 12 O -0.32 -9.43 9.67 -73.40 -0.71 -10.14 16 13 C 0.13 2.96 6.69 22.50 0.15 3.11 16 14 C -0.20 -3.03 9.04 22.37 0.20 -2.82 16 15 C -0.06 -0.67 10.04 22.25 0.22 -0.45 16 16 C -0.15 -2.21 9.83 22.31 0.22 -1.99 16 17 C -0.01 -0.12 6.32 22.31 0.14 0.02 16 18 Cl -0.07 -1.32 28.95 -2.72 -0.08 -1.40 16 19 C -0.17 -4.25 9.77 22.39 0.22 -4.03 16 20 N -0.73 -35.69 4.49 -322.94 -1.45 -37.14 16 21 C -0.22 -12.27 9.93 84.03 0.83 -11.44 16 22 H 0.07 3.88 7.83 -2.91 -0.02 3.85 16 23 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 24 N -0.97 -61.80 13.06 21.65 0.28 -61.52 16 25 Si 0.96 48.33 29.55 68.60 2.03 50.36 16 26 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 27 H -0.30 -15.87 7.11 99.48 0.71 -15.17 16 28 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.42 6.22 8.60 -92.71 -0.80 5.42 16 38 H 0.14 1.53 7.66 -2.39 -0.02 1.52 16 39 H 0.12 1.88 7.66 -2.39 -0.02 1.86 16 40 H 0.17 1.37 6.30 -2.91 -0.02 1.35 16 41 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 42 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 43 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 44 H 0.37 19.88 7.80 -92.71 -0.72 19.15 16 45 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -83.92 394.56 3.11 -80.81 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -0.51 Total: 28.12 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 5.26 Total: -4.04 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -3.14 Total: -117.82 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.45 Total: -36.04 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -83.92 3.11 -80.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146216559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.101 kcal (2) G-P(sol) polarization free energy of solvation -83.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds