Wall clock time and date at job start Sat Apr 11 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35657 * 116.99928 * 2 1 4 4 C 1.38667 * 120.14257 * 359.97438 * 3 2 1 5 5 C 1.38096 * 120.11795 * 179.97438 * 4 3 2 6 6 C 1.38480 * 120.41430 * 359.97438 * 5 4 3 7 7 C 1.37966 * 120.28739 * 0.02562 * 6 5 4 8 8 Cl 1.73593 * 120.06750 * 179.97438 * 7 6 5 9 9 C 1.39850 * 119.86492 * 0.24979 * 7 6 5 10 10 C 1.47471 * 120.19707 * 179.70310 * 9 7 6 11 11 O 1.21595 * 119.99474 * 81.36339 * 10 9 7 12 12 N 1.34769 * 120.00056 * 261.35749 * 10 9 7 13 13 C 1.46500 * 119.99891 * 184.72569 * 12 10 9 14 14 H 1.09008 * 109.46975 * 318.31022 * 13 12 10 15 15 C 1.52994 * 109.47540 * 78.31301 * 13 12 10 16 16 C 1.53006 * 109.47143 * 198.31441 * 13 12 10 17 17 C 1.53000 * 109.47162 * 65.98152 * 16 13 12 18 18 H 1.08997 * 109.46909 * 53.43348 * 17 16 13 19 19 C 1.53000 * 109.46925 * 173.43518 * 17 16 13 20 20 N 1.46499 * 109.46908 * 293.43515 * 17 16 13 21 21 C 1.36940 * 119.99655 * 159.33317 * 20 17 16 22 22 H 1.07992 * 120.00132 * 356.61851 * 21 20 17 23 23 C 1.38816 * 119.99841 * 176.61399 * 21 20 17 24 24 N 1.31620 * 120.00119 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99933 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47049 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46687 * 120.00168 * 25 23 21 28 28 H 1.48494 * 109.46915 * 239.99862 * 25 23 21 29 29 H 1.08998 * 109.46913 * 60.00189 * 1 2 3 30 30 H 1.08992 * 109.47388 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46837 * 300.00335 * 1 2 3 32 32 H 1.07996 * 119.94358 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.79723 * 179.97438 * 5 4 3 34 34 H 1.08000 * 119.85980 * 179.97438 * 6 5 4 35 35 H 0.96999 * 120.00474 * 4.71714 * 12 10 9 36 36 H 1.08994 * 109.47206 * 59.99765 * 15 13 12 37 37 H 1.09001 * 109.47630 * 180.02562 * 15 13 12 38 38 H 1.09006 * 109.46743 * 299.99783 * 15 13 12 39 39 H 1.08996 * 109.46920 * 185.98334 * 16 13 12 40 40 H 1.09001 * 109.46671 * 305.98199 * 16 13 12 41 41 H 1.08997 * 109.47465 * 60.00171 * 19 17 16 42 42 H 1.09002 * 109.46857 * 180.02562 * 19 17 16 43 43 H 1.08995 * 109.47211 * 300.00011 * 19 17 16 44 44 H 0.97003 * 120.00605 * 339.32896 * 20 17 16 45 45 H 0.97001 * 120.00098 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3735 -0.0005 5 6 1.9200 3.6037 0.0000 6 6 3.3024 3.6856 0.0016 7 6 4.0674 2.5375 0.0022 8 17 5.7999 2.6468 0.0035 9 6 3.4444 1.2855 -0.0042 10 6 4.2550 0.0536 -0.0103 11 8 4.7211 -0.3725 1.0288 12 7 4.4791 -0.5999 -1.1674 13 6 5.1958 -1.8777 -1.1601 14 1 6.0359 -1.8191 -0.4680 15 6 4.2464 -2.9925 -0.7166 16 6 5.7146 -2.1795 -2.5675 17 6 6.7758 -1.1467 -2.9522 18 1 7.5448 -1.1111 -2.1805 19 6 7.4108 -1.5410 -4.2872 20 7 6.1504 0.1720 -3.0795 21 6 6.9163 1.3040 -2.9957 22 1 7.9720 1.2271 -2.7814 23 6 6.3358 2.5505 -3.1862 24 7 5.0493 2.6442 -3.4479 25 14 7.3808 4.0947 -3.0726 26 1 8.7858 3.7205 -2.7709 27 1 7.3288 4.8237 -4.3653 28 1 6.8583 4.9674 -1.9908 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2140 2.3186 -0.0005 33 1 1.3290 4.5077 -0.0008 34 1 3.7838 4.6524 0.0016 35 1 4.1658 -0.2245 -2.0051 36 1 3.4064 -3.0510 -1.4086 37 1 4.7797 -3.9431 -0.7107 38 1 3.8768 -2.7774 0.2861 39 1 6.1543 -3.1766 -2.5865 40 1 4.8884 -2.1331 -3.2769 41 1 6.6419 -1.5765 -5.0589 42 1 8.1672 -0.8054 -4.5610 43 1 7.8762 -2.5220 -4.1925 44 1 5.1937 0.2432 -3.2231 45 1 4.6437 3.5152 -3.5813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146614251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:38 Heat of formation + Delta-G solvation = -37.423898 kcal Electronic energy + Delta-G solvation = -29498.316742 eV Core-core repulsion = 25542.774637 eV Total energy + Delta-G solvation = -3955.542105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.25385 -38.83442 -37.33739 -36.55632 -35.56928 -34.03811 -32.18707 -31.34679 -29.96919 -29.76770 -28.37897 -27.29254 -26.26965 -23.80293 -23.53630 -21.93148 -21.08485 -20.13910 -19.60942 -18.10786 -17.06824 -16.89488 -16.25874 -15.93368 -15.59023 -14.99892 -14.76928 -14.55325 -14.17060 -13.84939 -13.66981 -13.51171 -13.10350 -12.91953 -12.68974 -12.52824 -12.27602 -12.04331 -11.79568 -11.69927 -11.58329 -11.55398 -11.53517 -11.19377 -10.93680 -10.85837 -10.65867 -10.37131 -10.31641 -10.18136 -10.12158 -9.77792 -9.57186 -9.23907 -8.80257 -8.38286 -8.25017 -8.01386 -6.82060 -5.67007 -2.91414 1.33605 1.56428 2.64749 3.30457 3.40588 3.48796 3.53500 3.55754 3.71516 4.02706 4.68065 4.86424 5.05276 5.09687 5.12416 5.19521 5.39250 5.42549 5.46699 5.52230 5.56195 5.62283 5.68943 5.78710 5.87664 5.98683 6.07373 6.10219 6.21133 6.29168 6.33470 6.43078 6.46848 6.51256 6.54658 6.65825 6.68964 6.71135 6.94516 7.14313 7.27101 7.41761 7.82723 8.26768 8.50965 8.94325 9.63576 10.16654 10.52551 11.55609 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009196 B = 0.007127 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.999413 B = 3927.988651 C = 5898.058332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.308 6.308 3 C 0.164 3.836 4 C -0.218 4.218 5 C -0.056 4.056 6 C -0.151 4.151 7 C 0.066 3.934 8 Cl -0.019 7.019 9 C -0.143 4.143 10 C 0.589 3.411 11 O -0.551 6.551 12 N -0.685 5.685 13 C 0.150 3.850 14 H 0.080 0.920 15 C -0.161 4.161 16 C -0.132 4.132 17 C 0.170 3.830 18 H 0.044 0.956 19 C -0.162 4.162 20 N -0.714 5.714 21 C -0.224 4.224 22 H 0.063 0.937 23 C 0.010 3.990 24 N -0.923 5.923 25 Si 0.874 3.126 26 H -0.285 1.285 27 H -0.296 1.296 28 H -0.286 1.286 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.407 0.593 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.033 0.967 44 H 0.376 0.624 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.827 -4.759 5.102 12.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.117 3.883 4 C -0.237 4.237 5 C -0.074 4.074 6 C -0.170 4.170 7 C 0.038 3.962 8 Cl 0.010 6.990 9 C -0.148 4.148 10 C 0.374 3.626 11 O -0.430 6.430 12 N -0.337 5.337 13 C 0.046 3.954 14 H 0.098 0.902 15 C -0.219 4.219 16 C -0.170 4.170 17 C 0.060 3.940 18 H 0.062 0.938 19 C -0.222 4.222 20 N -0.358 5.358 21 C -0.355 4.355 22 H 0.081 0.919 23 C -0.186 4.186 24 N -0.572 5.572 25 Si 0.706 3.294 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.212 1.212 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.246 0.754 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.212 0.788 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.124 -5.157 5.832 11.994 hybrid contribution 0.029 1.509 -0.660 1.647 sum -9.095 -3.648 5.172 11.080 Atomic orbital electron populations 1.23066 0.78355 1.03882 1.01358 1.86060 1.21309 1.26470 1.88235 1.18664 0.90203 0.84601 0.94793 1.21055 0.99840 0.92006 1.10827 1.20846 0.93739 0.97086 0.95772 1.20840 0.93557 0.97501 1.05137 1.20577 0.87133 0.92291 0.96170 1.98445 1.06699 1.98256 1.95558 1.18928 0.90707 0.93955 1.11193 1.17521 0.78940 0.82162 0.83977 1.90715 1.51673 1.68022 1.32551 1.46000 1.56705 1.21723 1.09284 1.20824 0.94481 0.82694 0.97444 0.90198 1.22179 0.99796 0.98056 1.01879 1.22166 0.99839 0.99706 0.95302 1.20274 0.93346 0.85914 0.94467 0.93774 1.22400 1.00726 0.98890 1.00166 1.42441 1.07058 0.99478 1.86847 1.19047 0.92073 0.84714 1.39706 0.91945 1.24366 0.95476 0.96331 1.02453 1.69583 1.09176 1.22714 1.55765 0.86598 0.79919 0.85483 0.77352 1.21038 1.22339 1.21246 0.92417 0.88303 0.92692 0.85090 0.85173 0.84973 0.75361 0.92822 0.92280 0.92258 0.90778 0.91692 0.93655 0.92891 0.94806 0.78822 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.76 9.95 -18.67 -0.19 -4.94 16 3 C 0.16 2.79 6.70 -38.70 -0.26 2.53 16 4 C -0.22 -3.09 9.03 -39.48 -0.36 -3.44 16 5 C -0.06 -0.80 10.03 -39.54 -0.40 -1.19 16 6 C -0.15 -2.61 9.81 -39.59 -0.39 -2.99 16 7 C 0.07 1.34 6.35 -39.08 -0.25 1.09 16 8 Cl -0.02 -0.43 26.33 -51.86 -1.37 -1.79 16 9 C -0.14 -2.87 5.64 -104.81 -0.59 -3.46 16 10 C 0.59 12.42 5.67 -12.50 -0.07 12.35 16 11 O -0.55 -12.90 16.57 5.28 0.09 -12.81 16 12 N -0.68 -13.19 4.11 -54.87 -0.23 -13.42 16 13 C 0.15 2.55 2.53 -67.93 -0.17 2.38 16 14 H 0.08 1.52 7.72 -51.92 -0.40 1.12 16 15 C -0.16 -2.33 9.37 37.15 0.35 -1.98 16 16 C -0.13 -2.05 4.39 -26.73 -0.12 -2.17 16 17 C 0.17 3.21 2.88 -67.93 -0.20 3.02 16 18 H 0.04 0.90 8.10 -51.93 -0.42 0.48 16 19 C -0.16 -2.84 9.43 37.16 0.35 -2.49 16 20 N -0.71 -16.13 4.04 -53.43 -0.22 -16.34 16 21 C -0.22 -5.75 9.89 -15.06 -0.15 -5.90 16 22 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 23 C 0.01 0.26 4.36 -17.43 -0.08 0.19 16 24 N -0.92 -24.60 13.06 55.49 0.72 -23.88 16 25 Si 0.87 21.79 28.99 -169.99 -4.93 16.86 16 26 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 32 H 0.13 1.39 6.30 -52.49 -0.33 1.06 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 2.11 8.06 -52.49 -0.42 1.68 16 35 H 0.41 8.23 6.10 -40.82 -0.25 7.98 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.96 7.83 -51.93 -0.41 0.56 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.38 8.84 5.45 -40.82 -0.22 8.61 16 45 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -30.23 384.46 -8.24 -38.47 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -6.60 Total: 12.87 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.33 Total: -0.80 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.28 Total: -53.64 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.10 Total: -17.76 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.93 Total: 16.86 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.37 Total: -1.79 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.23 -8.24 -38.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146614251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.045 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds