Wall clock time and date at job start Sat Apr 11 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35657 * 116.99928 * 2 1 4 4 C 1.38667 * 120.14257 * 359.97438 * 3 2 1 5 5 C 1.38096 * 120.11795 * 179.97438 * 4 3 2 6 6 C 1.38480 * 120.41430 * 359.97438 * 5 4 3 7 7 C 1.37966 * 120.28739 * 0.02562 * 6 5 4 8 8 Cl 1.73593 * 120.06750 * 179.97438 * 7 6 5 9 9 C 1.39850 * 119.86492 * 0.24979 * 7 6 5 10 10 C 1.47471 * 120.19707 * 179.70310 * 9 7 6 11 11 O 1.21595 * 119.99474 * 81.36339 * 10 9 7 12 12 N 1.34769 * 120.00056 * 261.35749 * 10 9 7 13 13 C 1.46500 * 119.99891 * 184.72569 * 12 10 9 14 14 H 1.09008 * 109.46975 * 318.31022 * 13 12 10 15 15 C 1.52994 * 109.47540 * 78.31301 * 13 12 10 16 16 C 1.53006 * 109.47143 * 198.31441 * 13 12 10 17 17 C 1.53000 * 109.47162 * 65.98152 * 16 13 12 18 18 H 1.08997 * 109.46909 * 53.43348 * 17 16 13 19 19 C 1.53000 * 109.46925 * 173.43518 * 17 16 13 20 20 N 1.46499 * 109.46908 * 293.43515 * 17 16 13 21 21 C 1.36940 * 119.99655 * 159.33317 * 20 17 16 22 22 H 1.07992 * 120.00132 * 356.61851 * 21 20 17 23 23 C 1.38816 * 119.99841 * 176.61399 * 21 20 17 24 24 N 1.31620 * 120.00119 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99933 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47049 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46687 * 120.00168 * 25 23 21 28 28 H 1.48494 * 109.46915 * 239.99862 * 25 23 21 29 29 H 1.08998 * 109.46913 * 60.00189 * 1 2 3 30 30 H 1.08992 * 109.47388 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46837 * 300.00335 * 1 2 3 32 32 H 1.07996 * 119.94358 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.79723 * 179.97438 * 5 4 3 34 34 H 1.08000 * 119.85980 * 179.97438 * 6 5 4 35 35 H 0.96999 * 120.00474 * 4.71714 * 12 10 9 36 36 H 1.08994 * 109.47206 * 59.99765 * 15 13 12 37 37 H 1.09001 * 109.47630 * 180.02562 * 15 13 12 38 38 H 1.09006 * 109.46743 * 299.99783 * 15 13 12 39 39 H 1.08996 * 109.46920 * 185.98334 * 16 13 12 40 40 H 1.09001 * 109.46671 * 305.98199 * 16 13 12 41 41 H 1.08997 * 109.47465 * 60.00171 * 19 17 16 42 42 H 1.09002 * 109.46857 * 180.02562 * 19 17 16 43 43 H 1.08995 * 109.47211 * 300.00011 * 19 17 16 44 44 H 0.97003 * 120.00605 * 339.32896 * 20 17 16 45 45 H 0.97001 * 120.00098 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3735 -0.0005 5 6 1.9200 3.6037 0.0000 6 6 3.3024 3.6856 0.0016 7 6 4.0674 2.5375 0.0022 8 17 5.7999 2.6468 0.0035 9 6 3.4444 1.2855 -0.0042 10 6 4.2550 0.0536 -0.0103 11 8 4.7211 -0.3725 1.0288 12 7 4.4791 -0.5999 -1.1674 13 6 5.1958 -1.8777 -1.1601 14 1 6.0359 -1.8191 -0.4680 15 6 4.2464 -2.9925 -0.7166 16 6 5.7146 -2.1795 -2.5675 17 6 6.7758 -1.1467 -2.9522 18 1 7.5448 -1.1111 -2.1805 19 6 7.4108 -1.5410 -4.2872 20 7 6.1504 0.1720 -3.0795 21 6 6.9163 1.3040 -2.9957 22 1 7.9720 1.2271 -2.7814 23 6 6.3358 2.5505 -3.1862 24 7 5.0493 2.6442 -3.4479 25 14 7.3808 4.0947 -3.0726 26 1 8.7858 3.7205 -2.7709 27 1 7.3288 4.8237 -4.3653 28 1 6.8583 4.9674 -1.9908 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2140 2.3186 -0.0005 33 1 1.3290 4.5077 -0.0008 34 1 3.7838 4.6524 0.0016 35 1 4.1658 -0.2245 -2.0051 36 1 3.4064 -3.0510 -1.4086 37 1 4.7797 -3.9431 -0.7107 38 1 3.8768 -2.7774 0.2861 39 1 6.1543 -3.1766 -2.5865 40 1 4.8884 -2.1331 -3.2769 41 1 6.6419 -1.5765 -5.0589 42 1 8.1672 -0.8054 -4.5610 43 1 7.8762 -2.5220 -4.1925 44 1 5.1937 0.2432 -3.2231 45 1 4.6437 3.5152 -3.5813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146614251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:36 Heat of formation + Delta-G solvation = -55.977467 kcal Electronic energy + Delta-G solvation = -29499.121285 eV Core-core repulsion = 25542.774637 eV Total energy + Delta-G solvation = -3956.346648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -41.53961 -40.23105 -38.61065 -38.10901 -37.04776 -35.69967 -33.93833 -32.78563 -31.39139 -30.99430 -30.06316 -28.17606 -27.60174 -25.46379 -25.12856 -23.14134 -22.45082 -21.65186 -21.11760 -19.34804 -18.96989 -18.23834 -17.52030 -17.35111 -16.72105 -16.52023 -16.28436 -15.86113 -15.65268 -15.45119 -15.25629 -14.88239 -14.51074 -14.36922 -14.10897 -14.03292 -13.53770 -13.34047 -13.26557 -13.14360 -13.01167 -12.80071 -12.76636 -12.59468 -12.46539 -12.27696 -12.23455 -12.09408 -11.81408 -11.71364 -11.68141 -11.50576 -11.34715 -10.81176 -10.71827 -9.82716 -9.73014 -9.25242 -8.70995 -7.72023 -4.92053 0.05304 0.30179 1.19184 1.46804 1.49915 1.50801 1.74878 2.34529 2.38406 2.66804 2.69369 3.63885 3.69424 3.86076 3.94294 4.09133 4.13539 4.18718 4.20634 4.38642 4.39415 4.43583 4.45068 4.58591 4.61014 4.72146 4.76771 4.85518 4.90288 4.92682 5.09655 5.10160 5.14995 5.17755 5.21793 5.32174 5.38678 5.45892 5.56779 5.66336 5.71854 5.80447 6.33577 6.49178 6.70811 7.38452 7.60405 8.28830 8.56783 9.49931 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009196 B = 0.007127 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.999413 B = 3927.988651 C = 5898.058332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.161 3.839 4 C -0.206 4.206 5 C -0.042 4.042 6 C -0.167 4.167 7 C 0.041 3.959 8 Cl -0.057 7.057 9 C -0.181 4.181 10 C 0.587 3.413 11 O -0.589 6.589 12 N -0.680 5.680 13 C 0.145 3.855 14 H 0.053 0.947 15 C -0.148 4.148 16 C -0.117 4.117 17 C 0.162 3.838 18 H 0.024 0.976 19 C -0.151 4.151 20 N -0.717 5.717 21 C -0.219 4.219 22 H 0.045 0.955 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.900 3.100 26 H -0.291 1.291 27 H -0.301 1.301 28 H -0.285 1.285 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.175 0.825 33 H 0.176 0.824 34 H 0.137 0.863 35 H 0.403 0.597 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.036 0.964 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.028 0.972 43 H 0.067 0.933 44 H 0.372 0.628 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.606 -5.736 4.477 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.114 3.886 4 C -0.224 4.224 5 C -0.060 4.060 6 C -0.186 4.186 7 C 0.014 3.986 8 Cl -0.028 7.028 9 C -0.185 4.185 10 C 0.373 3.627 11 O -0.471 6.471 12 N -0.330 5.330 13 C 0.040 3.960 14 H 0.071 0.929 15 C -0.206 4.206 16 C -0.155 4.155 17 C 0.054 3.946 18 H 0.042 0.958 19 C -0.210 4.210 20 N -0.360 5.360 21 C -0.351 4.351 22 H 0.063 0.937 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.733 3.267 26 H -0.218 1.218 27 H -0.229 1.229 28 H -0.212 1.212 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.092 0.908 32 H 0.193 0.807 33 H 0.193 0.807 34 H 0.155 0.845 35 H 0.241 0.759 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.055 0.945 39 H 0.129 0.871 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.207 0.793 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.901 -6.169 5.190 14.374 hybrid contribution 0.801 1.752 -0.436 1.975 sum -11.100 -4.417 4.755 12.858 Atomic orbital electron populations 1.23474 0.75429 1.05913 1.02962 1.86040 1.24313 1.26045 1.87885 1.18821 0.89401 0.86224 0.94151 1.21557 1.01823 0.90715 1.08322 1.21363 0.92541 0.99005 0.93045 1.21098 0.95075 0.96765 1.05688 1.20773 0.85496 0.93628 0.98733 1.98412 1.09979 1.98352 1.96029 1.19036 0.92375 0.93219 1.13913 1.17809 0.78613 0.82518 0.83740 1.90669 1.53403 1.69257 1.33748 1.46069 1.56189 1.22269 1.08518 1.20994 0.94274 0.82773 0.97916 0.92910 1.22060 0.99792 0.98086 1.00671 1.22080 0.99044 1.00164 0.94181 1.20466 0.93986 0.85321 0.94819 0.95789 1.22237 1.00082 0.99926 0.98800 1.42466 1.06657 1.00147 1.86773 1.18991 0.91468 0.85984 1.38704 0.93743 1.24531 0.95884 0.97097 1.03214 1.69630 1.09393 1.22281 1.56710 0.86194 0.79050 0.84591 0.76850 1.21751 1.22931 1.21173 0.90864 0.86331 0.90822 0.80746 0.80700 0.84491 0.75899 0.91461 0.89406 0.94505 0.87145 0.90683 0.93417 0.95323 0.91438 0.79267 0.94516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -9.61 9.95 -89.72 -0.89 -10.50 16 3 C 0.16 5.26 6.70 22.84 0.15 5.41 16 4 C -0.21 -5.10 9.03 22.34 0.20 -4.90 16 5 C -0.04 -1.05 10.03 22.29 0.22 -0.83 16 6 C -0.17 -5.65 9.81 22.26 0.22 -5.43 16 7 C 0.04 1.71 6.35 22.60 0.14 1.85 16 8 Cl -0.06 -2.64 26.33 -2.72 -0.07 -2.71 16 9 C -0.18 -7.35 5.64 -19.99 -0.11 -7.46 16 10 C 0.59 25.56 5.67 86.68 0.49 26.05 16 11 O -0.59 -28.94 16.57 -4.01 -0.07 -29.01 16 12 N -0.68 -26.62 4.11 -445.77 -1.83 -28.45 16 13 C 0.14 4.87 2.53 44.99 0.11 4.98 16 14 H 0.05 2.07 7.72 -2.38 -0.02 2.05 16 15 C -0.15 -4.06 9.37 71.98 0.67 -3.39 16 16 C -0.12 -3.41 4.39 30.60 0.13 -3.27 16 17 C 0.16 6.09 2.88 44.99 0.13 6.22 16 18 H 0.02 1.00 8.10 -2.39 -0.02 0.98 16 19 C -0.15 -5.06 9.43 71.98 0.68 -4.39 16 20 N -0.72 -32.75 4.04 -322.95 -1.31 -34.06 16 21 C -0.22 -11.54 9.89 84.03 0.83 -10.71 16 22 H 0.04 2.47 7.83 -2.91 -0.02 2.45 16 23 C -0.01 -0.64 4.36 84.86 0.37 -0.27 16 24 N -0.93 -49.99 13.06 21.65 0.28 -49.71 16 25 Si 0.90 45.37 28.99 68.60 1.99 47.36 16 26 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 27 H -0.30 -15.32 7.11 99.48 0.71 -14.62 16 28 H -0.28 -14.21 7.11 99.48 0.71 -13.51 16 29 H 0.07 0.98 7.66 -2.39 -0.02 0.97 16 30 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 0.94 7.66 -2.39 -0.02 0.92 16 32 H 0.18 2.73 6.30 -2.91 -0.02 2.72 16 33 H 0.18 2.82 8.06 -2.91 -0.02 2.79 16 34 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 35 H 0.40 16.46 6.10 -92.71 -0.57 15.90 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.18 7.83 -2.38 -0.02 1.16 16 39 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.37 17.60 5.45 -92.71 -0.51 17.09 16 45 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 Total: -1.00 -69.84 384.46 3.41 -66.43 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.06 Total: 35.41 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 5.36 Total: 5.25 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -2.86 Total: -112.22 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -0.96 Total: -39.51 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.99 Total: 47.36 kcal Atomic # 17 Polarization: -2.64 SS G_CDS: -0.07 Total: -2.71 kcal Total: -69.84 3.41 -66.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146614251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.454 kcal (2) G-P(sol) polarization free energy of solvation -69.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds