Wall clock time and date at job start Sat Apr 11 2020 05:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47469 * 2 1 4 4 O 1.42906 * 109.47244 * 239.99878 * 2 1 3 5 5 C 1.53003 * 109.47329 * 120.00175 * 2 1 3 6 6 C 1.50694 * 109.47635 * 185.00028 * 5 2 1 7 7 O 1.21277 * 119.99574 * 359.97438 * 6 5 2 8 8 N 1.34769 * 120.00519 * 179.97438 * 6 5 2 9 9 C 1.38471 * 120.00323 * 174.33340 * 8 6 5 10 10 C 1.38640 * 126.09923 * 72.84239 * 9 8 6 11 11 C 1.43196 * 126.81441 * 359.93998 * 10 9 8 12 12 N 5.64543 * 137.23236 * 52.82545 * 2 1 3 13 13 C 1.47399 * 106.36988 * 179.97438 * 10 9 8 14 14 C 1.40847 * 126.47528 * 180.02562 * 13 10 9 15 15 H 1.08007 * 119.99696 * 0.53252 * 14 13 10 16 16 C 1.39997 * 120.00208 * 180.53406 * 14 13 10 17 17 N 1.30808 * 120.00317 * 351.58379 * 16 14 13 18 18 Si 1.86807 * 120.00283 * 171.58615 * 16 14 13 19 19 H 1.48501 * 109.46867 * 94.47758 * 18 16 14 20 20 H 1.48494 * 109.47138 * 214.48374 * 18 16 14 21 21 H 1.48503 * 109.46810 * 334.48266 * 18 16 14 22 22 N 1.32791 * 107.05054 * 359.97438 * 13 10 9 23 23 N 1.36129 * 126.09217 * 252.52674 * 9 8 6 24 24 C 1.39783 * 125.18857 * 0.02562 * 23 9 8 25 25 C 1.38977 * 120.07582 * 318.25459 * 24 23 9 26 26 C 1.38074 * 119.91729 * 179.72425 * 25 24 23 27 27 C 1.38312 * 120.08025 * 0.55283 * 26 25 24 28 28 C 1.38314 * 120.15644 * 359.72556 * 27 26 25 29 29 C 1.38070 * 120.08098 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47479 * 300.00150 * 1 2 3 32 32 H 1.09002 * 109.47014 * 60.00284 * 1 2 3 33 33 H 0.96695 * 113.99983 * 300.00224 * 4 2 1 34 34 H 1.09005 * 109.46842 * 304.99922 * 5 2 1 35 35 H 1.08997 * 109.47041 * 64.99509 * 5 2 1 36 36 H 0.97002 * 119.99538 * 354.33224 * 8 6 5 37 37 H 0.96999 * 120.00857 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.04050 * 359.97438 * 25 24 23 39 39 H 1.08003 * 119.96056 * 180.30154 * 26 25 24 40 40 H 1.08004 * 119.92145 * 179.74236 * 27 26 25 41 41 H 1.08000 * 119.95576 * 180.02562 * 28 27 26 42 42 H 1.07996 * 120.04208 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5419 -0.6150 1.3128 7 8 4.1450 -0.0212 0.4441 8 7 4.2148 -1.1797 2.3348 9 6 5.5995 -1.1844 2.3335 10 6 6.4203 -0.0900 2.5590 11 6 6.0043 1.2522 2.8347 12 7 5.6744 2.3163 3.0544 13 6 7.8060 -0.5821 2.4578 14 6 8.9792 0.1811 2.6157 15 1 8.9114 1.2350 2.8421 16 6 10.2331 -0.4263 2.4792 17 7 10.3215 -1.7268 2.3693 18 14 11.7802 0.6203 2.4539 19 1 12.3485 0.6968 3.8237 20 1 12.7765 0.0089 1.5380 21 1 11.4454 1.9872 1.9798 22 7 7.7393 -1.8812 2.1909 23 7 6.3976 -2.2656 2.1165 24 6 5.9444 -3.5620 1.8562 25 6 4.8697 -4.0804 2.5687 26 6 4.4211 -5.3593 2.3049 27 6 5.0472 -6.1285 1.3409 28 6 6.1207 -5.6179 0.6338 29 6 6.5708 -4.3376 0.8880 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7210 -1.5952 -1.2329 34 1 1.6054 -0.2617 2.1370 35 1 1.7516 -1.7715 1.2056 36 1 3.7291 -1.5829 3.0713 37 1 11.1902 -2.1477 2.2744 38 1 4.3834 -3.4821 3.3250 39 1 3.5828 -5.7610 2.8548 40 1 4.6968 -7.1301 1.1395 41 1 6.6070 -6.2212 -0.1185 42 1 7.4089 -3.9395 0.3352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181351156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:03 Heat of formation + Delta-G solvation = 40.459290 kcal Electronic energy + Delta-G solvation = -29094.308949 eV Core-core repulsion = 25041.036618 eV Total energy + Delta-G solvation = -4053.272330 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.64227 -39.36331 -38.29960 -37.21293 -35.38403 -34.64759 -33.67586 -32.19886 -32.10639 -30.78506 -29.13330 -28.72860 -27.55501 -26.01428 -23.35547 -22.42175 -22.19103 -20.97142 -20.47175 -20.06138 -18.38047 -17.31987 -16.83160 -16.57907 -16.37344 -16.09078 -15.69757 -15.12792 -14.96705 -14.59221 -14.39022 -14.07351 -13.87114 -13.61055 -13.45411 -13.23719 -12.94725 -12.63700 -12.60390 -12.27588 -12.14601 -11.95850 -11.89163 -11.81657 -11.43777 -11.31755 -11.13758 -10.99821 -10.95476 -10.76168 -10.28960 -10.27793 -9.83927 -9.73108 -9.62140 -8.96821 -8.81146 -8.60718 -7.86909 -7.34159 -6.69215 -4.65530 1.26189 1.54071 2.32046 2.63201 2.97408 3.00514 3.12470 3.18385 3.59926 3.70213 3.74470 3.97855 4.01870 4.26315 4.46523 4.49855 4.58963 4.94188 4.98898 5.04919 5.13104 5.15480 5.22358 5.26540 5.31492 5.37377 5.47808 5.53544 5.67945 5.80533 5.84794 5.95266 6.09205 6.22646 6.37376 6.44275 6.53378 6.66493 6.80339 6.99790 7.07186 7.24413 7.41551 7.60181 7.94609 8.18068 8.41345 8.51278 8.62939 8.79850 9.41580 10.25735 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009248 B = 0.004468 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.038172 B = 6265.283701 C = 8506.085449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.117 3.883 3 H 0.106 0.894 4 O -0.546 6.546 5 C -0.171 4.171 6 C 0.514 3.486 7 O -0.488 6.488 8 N -0.667 5.667 9 C 0.332 3.668 10 C -0.198 4.198 11 C 0.325 3.675 12 N -0.487 5.487 13 C 0.257 3.743 14 C -0.426 4.426 15 H 0.089 0.911 16 C 0.075 3.925 17 N -0.751 5.751 18 Si 0.914 3.086 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.260 1.260 22 N -0.312 5.312 23 N -0.343 5.343 24 C 0.189 3.811 25 C -0.147 4.147 26 C -0.103 4.103 27 C -0.143 4.143 28 C -0.101 4.101 29 C -0.109 4.109 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.367 0.633 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.406 0.594 37 H 0.279 0.721 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.699 -9.117 -0.829 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.057 3.943 3 H 0.124 0.876 4 O -0.350 6.350 5 C -0.212 4.212 6 C 0.300 3.700 7 O -0.358 6.358 8 N -0.322 5.322 9 C 0.112 3.888 10 C -0.218 4.218 11 C 0.013 3.987 12 N -0.166 5.166 13 C 0.105 3.895 14 C -0.465 4.465 15 H 0.107 0.893 16 C -0.148 4.148 17 N -0.376 5.376 18 Si 0.738 3.262 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.183 1.183 22 N -0.141 5.141 23 N -0.116 5.116 24 C 0.094 3.906 25 C -0.168 4.168 26 C -0.122 4.122 27 C -0.162 4.162 28 C -0.120 4.120 29 C -0.129 4.129 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.213 0.787 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.243 0.757 37 H 0.090 0.910 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.774 -7.745 -1.540 16.752 hybrid contribution -0.103 -0.181 0.721 0.751 sum -14.877 -7.925 -0.818 16.876 Atomic orbital electron populations 1.22522 0.95995 1.02555 1.03104 1.21661 0.92113 0.97416 0.83093 0.87618 1.86775 1.76988 1.28224 1.42965 1.22495 0.92418 1.03972 1.02296 1.20699 0.89824 0.78534 0.80979 1.90838 1.69702 1.38281 1.36951 1.42674 1.03036 1.61725 1.24723 1.17576 0.80920 0.88529 1.01781 1.17012 0.94440 0.85962 1.24375 1.24477 0.91623 0.91575 0.91054 1.81024 1.09771 1.11382 1.14459 1.20254 0.88801 0.89369 0.91069 1.18670 0.87741 0.96105 1.43991 0.89308 1.25883 1.00779 0.95123 0.93026 1.69868 1.26600 1.09710 1.31465 0.86191 0.80210 0.80935 0.78903 1.19450 1.20022 1.18343 1.79162 0.83635 1.12616 1.38645 1.46548 1.06738 1.03569 1.54778 1.17440 0.94674 0.83522 0.94944 1.20929 0.99017 0.96517 1.00356 1.20833 0.99826 0.93414 0.98115 1.21060 0.97346 0.99890 0.97889 1.21022 0.96559 0.94882 0.99549 1.21150 1.00755 0.94337 0.96650 0.92235 0.91429 0.91387 0.78691 0.87797 0.88262 0.75664 0.90981 0.86522 0.85942 0.86242 0.85777 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.53 37.16 0.35 -0.98 16 2 C 0.12 1.27 3.13 -26.73 -0.08 1.18 16 3 H 0.11 1.40 7.95 -51.93 -0.41 0.99 16 4 O -0.55 -7.05 12.57 -49.66 -0.62 -7.68 16 5 C -0.17 -1.67 5.38 -27.88 -0.15 -1.83 16 6 C 0.51 8.17 7.66 -10.99 -0.08 8.09 16 7 O -0.49 -10.44 15.31 -8.87 -0.14 -10.58 16 8 N -0.67 -10.45 4.40 -10.92 -0.05 -10.49 16 9 C 0.33 6.94 6.23 -152.43 -0.95 5.99 16 10 C -0.20 -4.79 6.09 -104.10 -0.63 -5.42 16 11 C 0.32 7.78 15.66 -22.49 -0.35 7.42 16 12 N -0.49 -11.68 18.53 41.82 0.78 -10.90 16 13 C 0.26 6.85 6.93 -82.74 -0.57 6.27 16 14 C -0.43 -11.37 9.25 -37.94 -0.35 -11.72 16 15 H 0.09 2.31 7.86 -52.48 -0.41 1.90 16 16 C 0.08 1.89 5.48 -17.33 -0.10 1.80 16 17 N -0.75 -19.52 12.00 55.55 0.67 -18.85 16 18 Si 0.91 18.88 29.57 -169.99 -5.03 13.86 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 N -0.31 -8.14 10.58 33.37 0.35 -7.79 16 23 N -0.34 -7.54 3.69 -9.39 -0.03 -7.58 16 24 C 0.19 3.47 6.24 -83.69 -0.52 2.95 16 25 C -0.15 -2.09 9.09 -39.37 -0.36 -2.45 16 26 C -0.10 -1.19 10.04 -39.61 -0.40 -1.59 16 27 C -0.14 -1.66 10.04 -39.53 -0.40 -2.05 16 28 C -0.10 -1.37 10.04 -39.61 -0.40 -1.77 16 29 C -0.11 -1.91 9.81 -39.37 -0.39 -2.29 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.37 3.15 9.04 45.56 0.41 3.56 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.41 4.62 7.65 -40.82 -0.31 4.31 16 37 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 38 H 0.12 1.43 6.54 -52.48 -0.34 1.09 16 39 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 40 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 41 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.13 2.61 8.06 -52.49 -0.42 2.18 16 LS Contribution 378.88 15.07 5.71 5.71 Total: -1.00 -35.06 378.88 -7.75 -42.82 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -4.01 Total: 7.88 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -5.38 Total: 3.60 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 1.71 Total: -55.61 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.76 Total: -18.26 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.06 -7.75 -42.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181351156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.275 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds