Wall clock time and date at job start Sat Apr 11 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47469 * 2 1 4 4 O 1.42906 * 109.47244 * 239.99878 * 2 1 3 5 5 C 1.53003 * 109.47329 * 120.00175 * 2 1 3 6 6 C 1.50694 * 109.47635 * 185.00028 * 5 2 1 7 7 O 1.21277 * 119.99574 * 359.97438 * 6 5 2 8 8 N 1.34769 * 120.00519 * 179.97438 * 6 5 2 9 9 C 1.38471 * 120.00323 * 174.33340 * 8 6 5 10 10 C 1.38640 * 126.09923 * 72.84239 * 9 8 6 11 11 C 1.43196 * 126.81441 * 359.93998 * 10 9 8 12 12 N 5.64543 * 137.23236 * 52.82545 * 2 1 3 13 13 C 1.47399 * 106.36988 * 179.97438 * 10 9 8 14 14 C 1.40847 * 126.47528 * 180.02562 * 13 10 9 15 15 H 1.08007 * 119.99696 * 0.53252 * 14 13 10 16 16 C 1.39997 * 120.00208 * 180.53406 * 14 13 10 17 17 N 1.30808 * 120.00317 * 351.58379 * 16 14 13 18 18 Si 1.86807 * 120.00283 * 171.58615 * 16 14 13 19 19 H 1.48501 * 109.46867 * 94.47758 * 18 16 14 20 20 H 1.48494 * 109.47138 * 214.48374 * 18 16 14 21 21 H 1.48503 * 109.46810 * 334.48266 * 18 16 14 22 22 N 1.32791 * 107.05054 * 359.97438 * 13 10 9 23 23 N 1.36129 * 126.09217 * 252.52674 * 9 8 6 24 24 C 1.39783 * 125.18857 * 0.02562 * 23 9 8 25 25 C 1.38977 * 120.07582 * 318.25459 * 24 23 9 26 26 C 1.38074 * 119.91729 * 179.72425 * 25 24 23 27 27 C 1.38312 * 120.08025 * 0.55283 * 26 25 24 28 28 C 1.38314 * 120.15644 * 359.72556 * 27 26 25 29 29 C 1.38070 * 120.08098 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47479 * 300.00150 * 1 2 3 32 32 H 1.09002 * 109.47014 * 60.00284 * 1 2 3 33 33 H 0.96695 * 113.99983 * 300.00224 * 4 2 1 34 34 H 1.09005 * 109.46842 * 304.99922 * 5 2 1 35 35 H 1.08997 * 109.47041 * 64.99509 * 5 2 1 36 36 H 0.97002 * 119.99538 * 354.33224 * 8 6 5 37 37 H 0.96999 * 120.00857 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.04050 * 359.97438 * 25 24 23 39 39 H 1.08003 * 119.96056 * 180.30154 * 26 25 24 40 40 H 1.08004 * 119.92145 * 179.74236 * 27 26 25 41 41 H 1.08000 * 119.95576 * 180.02562 * 28 27 26 42 42 H 1.07996 * 120.04208 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5419 -0.6150 1.3128 7 8 4.1450 -0.0212 0.4441 8 7 4.2148 -1.1797 2.3348 9 6 5.5995 -1.1844 2.3335 10 6 6.4203 -0.0900 2.5590 11 6 6.0043 1.2522 2.8347 12 7 5.6744 2.3163 3.0544 13 6 7.8060 -0.5821 2.4578 14 6 8.9792 0.1811 2.6157 15 1 8.9114 1.2350 2.8421 16 6 10.2331 -0.4263 2.4792 17 7 10.3215 -1.7268 2.3693 18 14 11.7802 0.6203 2.4539 19 1 12.3485 0.6968 3.8237 20 1 12.7765 0.0089 1.5380 21 1 11.4454 1.9872 1.9798 22 7 7.7393 -1.8812 2.1909 23 7 6.3976 -2.2656 2.1165 24 6 5.9444 -3.5620 1.8562 25 6 4.8697 -4.0804 2.5687 26 6 4.4211 -5.3593 2.3049 27 6 5.0472 -6.1285 1.3409 28 6 6.1207 -5.6179 0.6338 29 6 6.5708 -4.3376 0.8880 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7210 -1.5952 -1.2329 34 1 1.6054 -0.2617 2.1370 35 1 1.7516 -1.7715 1.2056 36 1 3.7291 -1.5829 3.0713 37 1 11.1902 -2.1477 2.2744 38 1 4.3834 -3.4821 3.3250 39 1 3.5828 -5.7610 2.8548 40 1 4.6968 -7.1301 1.1395 41 1 6.6070 -6.2212 -0.1185 42 1 7.4089 -3.9395 0.3352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181351156.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:01 Heat of formation + Delta-G solvation = 15.982825 kcal Electronic energy + Delta-G solvation = -29095.370328 eV Core-core repulsion = 25041.036618 eV Total energy + Delta-G solvation = -4054.333710 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.15679 -40.65776 -39.58828 -38.22007 -37.23258 -36.24882 -35.37122 -33.74753 -33.00006 -31.89754 -30.52958 -30.20696 -28.73837 -27.78176 -24.69838 -23.60769 -23.27329 -22.39676 -21.87139 -21.54395 -19.85603 -18.71603 -18.41425 -17.99658 -17.35095 -17.18935 -16.96961 -16.72243 -16.33753 -16.03368 -15.61560 -15.13947 -15.03098 -14.90816 -14.79628 -14.64716 -14.33507 -14.20247 -13.93737 -13.63241 -13.45378 -13.33983 -13.04241 -12.95795 -12.89596 -12.76539 -12.65184 -12.45055 -12.05273 -11.97127 -11.76624 -11.44118 -11.34172 -11.20508 -10.98966 -10.56193 -10.31610 -9.91481 -9.54439 -8.99235 -8.57913 -6.63684 -0.05489 0.43668 0.80380 1.30858 1.31836 1.39967 1.54135 1.62204 1.82263 1.91774 2.20676 2.29119 2.60018 2.84193 3.36515 3.47411 3.52254 3.59919 3.78097 3.94031 4.03806 4.19867 4.27378 4.34622 4.39218 4.52122 4.57336 4.59726 4.63203 4.64872 4.79490 4.93018 4.95563 5.09913 5.16219 5.19140 5.32063 5.34740 5.48084 5.55500 5.58664 5.96591 6.12376 6.25380 6.52805 6.58846 6.75034 6.85988 6.94598 7.13813 7.53879 8.39299 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009248 B = 0.004468 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.038172 B = 6265.283701 C = 8506.085449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.111 3.889 3 H 0.067 0.933 4 O -0.579 6.579 5 C -0.155 4.155 6 C 0.509 3.491 7 O -0.552 6.552 8 N -0.652 5.652 9 C 0.359 3.641 10 C -0.250 4.250 11 C 0.330 3.670 12 N -0.502 5.502 13 C 0.232 3.768 14 C -0.464 4.464 15 H 0.080 0.920 16 C 0.036 3.964 17 N -0.785 5.785 18 Si 0.986 3.014 19 H -0.257 1.257 20 H -0.264 1.264 21 H -0.264 1.264 22 N -0.345 5.345 23 N -0.340 5.340 24 C 0.133 3.867 25 C -0.140 4.140 26 C -0.087 4.087 27 C -0.122 4.122 28 C -0.102 4.102 29 C -0.138 4.138 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.384 0.616 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.430 0.570 37 H 0.286 0.714 38 H 0.137 0.863 39 H 0.173 0.827 40 H 0.165 0.835 41 H 0.146 0.854 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.168 -12.443 0.080 22.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.052 3.948 3 H 0.086 0.914 4 O -0.386 6.386 5 C -0.194 4.194 6 C 0.298 3.702 7 O -0.426 6.426 8 N -0.309 5.309 9 C 0.136 3.864 10 C -0.270 4.270 11 C 0.019 3.981 12 N -0.182 5.182 13 C 0.079 3.921 14 C -0.503 4.503 15 H 0.098 0.902 16 C -0.184 4.184 17 N -0.411 5.411 18 Si 0.806 3.194 19 H -0.181 1.181 20 H -0.188 1.188 21 H -0.188 1.188 22 N -0.174 5.174 23 N -0.113 5.113 24 C 0.042 3.958 25 C -0.161 4.161 26 C -0.106 4.106 27 C -0.140 4.140 28 C -0.121 4.121 29 C -0.158 4.158 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.233 0.767 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.272 0.728 37 H 0.097 0.903 38 H 0.154 0.846 39 H 0.190 0.810 40 H 0.182 0.818 41 H 0.164 0.836 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.289 -11.150 -0.601 21.428 hybrid contribution 0.808 0.545 0.361 1.039 sum -17.481 -10.605 -0.240 20.448 Atomic orbital electron populations 1.22399 0.92581 1.04369 1.03509 1.21699 0.94530 0.95601 0.83006 0.91439 1.86733 1.77905 1.29807 1.44162 1.22600 0.86787 1.06914 1.03130 1.21988 0.92241 0.76524 0.79442 1.90826 1.71428 1.41016 1.39352 1.42763 1.00597 1.61677 1.25857 1.17613 0.83102 0.87213 0.98510 1.17096 0.94267 0.86996 1.28610 1.24539 0.91370 0.91601 0.90563 1.80978 1.10222 1.11300 1.15732 1.20562 0.90128 0.90025 0.91352 1.18903 0.89200 0.96042 1.46112 0.90163 1.26736 1.03410 0.96276 0.91953 1.69944 1.27732 1.11231 1.32193 0.85132 0.76073 0.78642 0.79556 1.18087 1.18776 1.18840 1.78975 0.86858 1.12678 1.38842 1.46664 1.05707 1.05314 1.53573 1.18018 0.97553 0.82597 0.97674 1.21231 0.97122 0.97966 0.99768 1.21413 1.00195 0.91608 0.97335 1.21630 0.95111 1.01443 0.95803 1.21310 0.97335 0.93156 1.00253 1.21083 1.00663 0.96497 0.97597 0.89627 0.89839 0.92234 0.76695 0.84274 0.83869 0.72809 0.90310 0.84572 0.80959 0.81763 0.83624 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 9.53 71.98 0.69 -1.23 16 2 C 0.11 2.24 3.13 30.59 0.10 2.34 16 3 H 0.07 1.85 7.95 -2.39 -0.02 1.83 16 4 O -0.58 -14.61 12.57 -135.18 -1.70 -16.30 16 5 C -0.15 -2.50 5.38 29.85 0.16 -2.34 16 6 C 0.51 15.83 7.66 87.66 0.67 16.50 16 7 O -0.55 -24.64 15.31 10.78 0.17 -24.47 16 8 N -0.65 -19.84 4.40 -306.86 -1.35 -21.19 16 9 C 0.36 15.57 6.23 131.97 0.82 16.39 16 10 C -0.25 -12.88 6.09 -19.52 -0.12 -12.99 16 11 C 0.33 16.76 15.66 88.34 1.38 18.14 16 12 N -0.50 -25.21 18.53 19.00 0.35 -24.86 16 13 C 0.23 13.32 6.93 42.05 0.29 13.62 16 14 C -0.46 -26.64 9.25 23.34 0.22 -26.43 16 15 H 0.08 4.54 7.86 -2.91 -0.02 4.51 16 16 C 0.04 1.93 5.48 85.27 0.47 2.39 16 17 N -0.79 -43.13 12.00 21.84 0.26 -42.87 16 18 Si 0.99 40.46 29.57 68.60 2.03 42.49 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 22 N -0.34 -19.29 10.58 -48.33 -0.51 -19.80 16 23 N -0.34 -15.62 3.69 -183.61 -0.68 -16.29 16 24 C 0.13 4.94 6.24 38.23 0.24 5.17 16 25 C -0.14 -3.54 9.09 22.41 0.20 -3.34 16 26 C -0.09 -1.50 10.04 22.25 0.22 -1.27 16 27 C -0.12 -2.15 10.04 22.31 0.22 -1.92 16 28 C -0.10 -2.54 10.04 22.25 0.22 -2.31 16 29 C -0.14 -4.98 9.81 22.41 0.22 -4.76 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.38 5.85 9.04 -74.06 -0.67 5.18 16 34 H 0.14 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.43 8.59 7.65 -92.71 -0.71 7.88 16 37 H 0.29 14.18 8.30 -92.71 -0.77 13.41 16 38 H 0.14 2.81 6.54 -2.91 -0.02 2.79 16 39 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 40 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 41 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 42 H 0.09 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -88.72 378.88 4.30 -84.43 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -0.28 Total: 20.92 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 6.01 Total: 17.95 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -1.93 Total: -125.01 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.53 Total: -40.78 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -88.72 4.30 -84.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181351156.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.408 kcal (2) G-P(sol) polarization free energy of solvation -88.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds