Wall clock time and date at job start Sat Apr 11 2020 05:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47239 * 2 1 4 4 C 1.50699 * 109.47032 * 120.00468 * 2 1 3 5 5 O 1.21288 * 119.99929 * 108.35507 * 4 2 1 6 6 N 1.34773 * 120.00045 * 288.35466 * 4 2 1 7 7 C 1.46499 * 120.00157 * 6.49633 * 6 4 2 8 8 C 1.52994 * 109.47064 * 95.49453 * 7 6 4 9 9 O 1.42897 * 109.47118 * 66.56209 * 8 7 6 10 10 C 1.46506 * 120.00066 * 186.50177 * 6 4 2 11 11 C 1.53005 * 109.47007 * 89.99543 * 10 6 4 12 12 N 1.46497 * 109.46658 * 180.02562 * 11 10 6 13 13 C 1.36938 * 119.99948 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99934 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00250 * 180.02562 * 13 12 11 16 16 N 1.31614 * 119.99788 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00199 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47053 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47279 * 119.99366 * 17 15 13 20 20 H 1.48496 * 109.47073 * 239.99672 * 17 15 13 21 21 C 1.50702 * 109.46677 * 240.00437 * 2 1 3 22 22 C 1.38243 * 119.98465 * 120.00088 * 21 2 1 23 23 C 1.38218 * 120.01076 * 180.02562 * 22 21 2 24 24 C 1.38352 * 119.98806 * 359.97438 * 23 22 21 25 25 Cl 1.73592 * 120.01446 * 179.97438 * 24 23 22 26 26 C 1.38359 * 119.97227 * 0.27110 * 24 23 22 27 27 C 1.38212 * 119.98719 * 359.49210 * 26 24 23 28 28 H 1.09000 * 109.47147 * 66.71637 * 1 2 3 29 29 H 1.08996 * 109.47455 * 186.72239 * 1 2 3 30 30 H 1.09000 * 109.46831 * 306.71700 * 1 2 3 31 31 H 1.08999 * 109.47059 * 215.49623 * 7 6 4 32 32 H 1.09000 * 109.47056 * 335.49735 * 7 6 4 33 33 H 1.09003 * 109.47196 * 186.56546 * 8 7 6 34 34 H 1.09004 * 109.46993 * 306.56371 * 8 7 6 35 35 H 0.96707 * 114.00378 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.46721 * 209.99546 * 10 6 4 37 37 H 1.09000 * 109.46536 * 329.99755 * 10 6 4 38 38 H 1.08995 * 109.46993 * 299.99930 * 11 10 6 39 39 H 1.08994 * 109.46772 * 60.00236 * 11 10 6 40 40 H 0.97005 * 120.00673 * 359.97438 * 12 11 10 41 41 H 0.97009 * 119.99953 * 180.02562 * 16 15 13 42 42 H 1.07996 * 119.99711 * 0.02562 * 22 21 2 43 43 H 1.08003 * 120.00469 * 180.02562 * 23 22 21 44 44 H 1.07996 * 120.00378 * 179.71847 * 26 24 23 45 45 H 1.07995 * 119.99835 * 180.23234 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.5464 -1.8046 1.1315 6 7 1.9105 -0.1302 2.4407 7 6 1.1648 1.1231 2.5803 8 6 -0.2742 0.8162 2.9997 9 8 -0.2787 0.2619 4.3167 10 6 2.5238 -0.7525 3.6166 11 6 3.9485 -0.2221 3.7896 12 7 4.5619 -0.8449 4.9652 13 6 5.8441 -0.5214 5.3208 14 1 6.4033 0.1927 4.7343 15 6 6.4256 -1.1119 6.4343 16 7 5.7444 -1.9824 7.1487 17 14 8.1750 -0.6710 6.9190 18 1 8.7185 0.3239 5.9598 19 1 8.1790 -0.0936 8.2872 20 1 9.0182 -1.8931 6.8949 21 6 2.0323 -0.7103 -1.2306 22 6 2.8270 -0.0382 -2.1403 23 6 3.2875 -0.6890 -3.2694 24 6 2.9534 -2.0135 -3.4887 25 17 3.5308 -2.8314 -4.9069 26 6 2.1537 -2.6842 -2.5804 27 6 1.6979 -2.0338 -1.4492 28 1 -0.3633 0.4062 -0.9440 29 1 -0.3634 -1.0205 0.1203 30 1 -0.3633 0.6144 0.8238 31 1 1.6394 1.7457 3.3388 32 1 1.1605 1.6515 1.6270 33 1 -0.8593 1.7359 2.9906 34 1 -0.7110 0.1008 2.3028 35 1 -1.1603 0.0428 4.6484 36 1 1.9364 -0.5121 4.5028 37 1 2.5525 -1.8338 3.4820 38 1 4.5358 -0.4625 2.9035 39 1 3.9197 0.8591 3.9242 40 1 4.0596 -1.4860 5.4922 41 1 6.1506 -2.3948 7.9272 42 1 3.0881 0.9956 -1.9689 43 1 3.9087 -0.1639 -3.9799 44 1 1.8889 -3.7168 -2.7534 45 1 1.0768 -2.5583 -0.7382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272250385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:25 Heat of formation + Delta-G solvation = -73.458005 kcal Electronic energy + Delta-G solvation = -27358.859474 eV Core-core repulsion = 23401.754812 eV Total energy + Delta-G solvation = -3957.104661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66424 -40.01497 -38.14440 -37.52348 -37.06094 -35.94440 -35.07611 -33.33284 -32.04028 -30.99595 -29.97159 -29.06259 -26.17699 -25.13180 -24.02484 -23.82080 -23.48170 -22.18751 -19.96359 -19.14308 -18.62670 -18.13751 -17.99290 -17.46207 -16.79494 -16.47975 -16.23531 -15.97276 -15.49478 -15.28012 -15.25083 -15.10063 -14.74520 -14.67484 -14.41378 -14.36088 -14.07766 -13.66603 -13.34645 -13.07332 -12.97785 -12.93796 -12.77990 -12.71165 -12.50592 -12.44806 -12.23519 -12.19563 -12.09584 -11.90616 -11.87613 -11.75870 -11.00561 -10.77239 -10.71374 -9.96077 -9.68138 -9.54901 -9.08199 -7.98794 -5.30019 0.11431 0.35903 1.13873 1.44656 1.47248 1.57123 1.61596 1.93877 2.54198 2.67051 3.34063 3.40014 3.48360 3.58341 3.82690 3.95212 4.06968 4.10322 4.15189 4.15759 4.25312 4.32612 4.37589 4.41734 4.50094 4.52235 4.60949 4.68132 4.73313 4.78884 4.86165 4.95617 5.00829 5.07056 5.09960 5.21705 5.25475 5.31492 5.41425 5.54164 5.58034 5.83052 6.22419 6.45435 7.01017 7.18646 7.28054 8.00020 8.25443 9.24985 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009520 B = 0.002872 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.406279 B = 9747.645423 C =12008.656995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.063 4.063 3 H 0.136 0.864 4 C 0.507 3.493 5 O -0.578 6.578 6 N -0.596 5.596 7 C 0.091 3.909 8 C 0.049 3.951 9 O -0.595 6.595 10 C 0.131 3.869 11 C 0.151 3.849 12 N -0.743 5.743 13 C -0.250 4.250 14 H 0.074 0.926 15 C -0.075 4.075 16 N -0.969 5.969 17 Si 0.979 3.021 18 H -0.266 1.266 19 H -0.287 1.287 20 H -0.292 1.292 21 C -0.076 4.076 22 C -0.099 4.099 23 C -0.119 4.119 24 C -0.046 4.046 25 Cl -0.076 7.076 26 C -0.126 4.126 27 C -0.081 4.081 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.393 0.607 36 H 0.091 0.909 37 H 0.050 0.950 38 H -0.002 1.002 39 H 0.028 0.972 40 H 0.374 0.626 41 H 0.253 0.747 42 H 0.161 0.839 43 H 0.151 0.849 44 H 0.136 0.864 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.317 9.851 -22.178 30.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 H 0.153 0.847 4 C 0.296 3.704 5 O -0.457 6.457 6 N -0.327 5.327 7 C -0.030 4.030 8 C -0.029 4.029 9 O -0.403 6.403 10 C 0.007 3.993 11 C 0.024 3.976 12 N -0.386 5.386 13 C -0.381 4.381 14 H 0.092 0.908 15 C -0.267 4.267 16 N -0.619 5.619 17 Si 0.807 3.193 18 H -0.190 1.190 19 H -0.213 1.213 20 H -0.220 1.220 21 C -0.077 4.077 22 C -0.117 4.117 23 C -0.137 4.137 24 C -0.072 4.072 25 Cl -0.047 7.047 26 C -0.145 4.145 27 C -0.099 4.099 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.152 0.848 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.243 0.757 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.016 0.984 39 H 0.046 0.954 40 H 0.206 0.794 41 H 0.062 0.938 42 H 0.178 0.822 43 H 0.169 0.831 44 H 0.154 0.846 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.215 9.400 -22.450 29.811 hybrid contribution 0.498 -0.933 0.791 1.320 sum -16.717 8.467 -21.659 28.640 Atomic orbital electron populations 1.22180 0.89629 1.03305 1.05450 1.20383 0.99605 1.00664 0.87698 0.84678 1.21301 0.78125 0.85658 0.85270 1.90732 1.45965 1.22532 1.86458 1.47820 1.52803 1.25546 1.06537 1.22208 0.91316 0.84809 1.04713 1.23074 0.96359 0.99240 0.84222 1.86553 1.35813 1.85473 1.32503 1.21207 0.92510 0.97006 0.88608 1.20941 0.92636 0.95647 0.88418 1.42414 1.13959 1.51716 1.30542 1.19634 0.90951 1.19684 1.07862 0.90824 1.25662 1.02905 0.99742 0.98425 1.69840 1.38573 1.33353 1.20126 0.84994 0.79174 0.77292 0.77792 1.18990 1.21343 1.21954 1.19673 0.98179 0.94346 0.95484 1.21323 0.95999 1.01480 0.92904 1.21265 1.00805 0.92552 0.99089 1.21103 1.01020 0.94332 0.90767 1.98359 1.87858 1.79321 1.39133 1.21163 0.98383 1.00885 0.94058 1.20974 0.99134 0.94438 0.95387 0.88848 0.93019 0.88670 0.90075 0.84785 0.89137 0.91887 0.75689 0.89064 0.93137 0.98385 0.95394 0.79422 0.93784 0.82166 0.83102 0.84583 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.01 71.98 0.58 -0.97 16 2 C -0.06 -1.05 2.06 -12.28 -0.03 -1.07 16 3 H 0.14 1.41 6.78 -2.39 -0.02 1.39 16 4 C 0.51 14.19 6.88 87.66 0.60 14.79 16 5 O -0.58 -22.47 14.29 -3.05 -0.04 -22.51 16 6 N -0.60 -16.06 2.47 -821.81 -2.03 -18.09 16 7 C 0.09 1.51 5.33 86.38 0.46 1.97 16 8 C 0.05 0.62 6.37 71.98 0.46 1.08 16 9 O -0.59 -11.49 12.06 -148.98 -1.80 -13.28 16 10 C 0.13 4.88 5.42 86.38 0.47 5.35 16 11 C 0.15 6.79 6.58 86.38 0.57 7.36 16 12 N -0.74 -41.28 5.60 -343.46 -1.92 -43.21 16 13 C -0.25 -14.87 9.99 84.03 0.84 -14.03 16 14 H 0.07 4.23 7.83 -2.91 -0.02 4.20 16 15 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 16 N -0.97 -61.69 13.06 21.65 0.28 -61.41 16 17 Si 0.98 47.78 29.55 68.60 2.03 49.80 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 21 C -0.08 -1.55 4.51 -19.86 -0.09 -1.64 16 22 C -0.10 -1.70 9.67 22.27 0.22 -1.49 16 23 C -0.12 -2.17 9.83 22.29 0.22 -1.95 16 24 C -0.05 -0.97 6.32 22.33 0.14 -0.83 16 25 Cl -0.08 -1.50 28.96 -2.72 -0.08 -1.58 16 26 C -0.13 -2.84 9.83 22.29 0.22 -2.62 16 27 C -0.08 -1.89 7.90 22.27 0.18 -1.72 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.70 7.63 -2.39 -0.02 0.69 16 30 H 0.09 0.61 3.62 -2.39 -0.01 0.60 16 31 H 0.08 1.55 8.11 -2.39 -0.02 1.53 16 32 H 0.13 1.09 5.38 -2.39 -0.01 1.08 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.70 5.85 -2.38 -0.01 0.68 16 35 H 0.39 4.15 9.12 -74.05 -0.68 3.47 16 36 H 0.09 3.39 6.66 -2.39 -0.02 3.37 16 37 H 0.05 2.19 7.34 -2.39 -0.02 2.17 16 38 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.37 21.95 7.67 -92.70 -0.71 21.23 16 41 H 0.25 15.45 8.31 -92.70 -0.77 14.68 16 42 H 0.16 1.72 7.94 -2.91 -0.02 1.70 16 43 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 44 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 45 H 0.12 2.97 7.32 -2.91 -0.02 2.95 16 Total: -1.00 -82.72 379.76 1.38 -81.33 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -0.35 Total: 28.76 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 5.30 Total: 0.19 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -3.67 Total: -122.71 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.84 Total: -35.80 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.80 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -82.72 1.38 -81.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272250385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.875 kcal (2) G-P(sol) polarization free energy of solvation -82.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds