Wall clock time and date at job start Sat Apr 11 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47409 * 291.86233 * 3 2 1 5 5 C 1.42894 * 114.00140 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47181 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47236 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99628 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99959 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99740 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46889 * 184.98747 * 10 9 7 12 12 H 1.08998 * 112.78135 * 314.88262 * 11 10 9 13 13 C 1.53755 * 113.55678 * 85.74240 * 11 10 9 14 14 C 1.53498 * 83.25886 * 140.98406 * 13 11 10 15 15 N 1.47066 * 87.98719 * 333.76356 * 14 13 11 16 16 C 1.34771 * 136.05839 * 207.08220 * 15 14 13 17 17 O 1.21280 * 120.00140 * 175.01456 * 16 15 14 18 18 C 1.50700 * 120.00085 * 355.01681 * 16 15 14 19 19 S 1.80992 * 109.47414 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00273 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00171 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00230 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99577 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00022 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47467 * 89.99635 * 24 22 20 26 26 H 1.48503 * 109.46979 * 209.99677 * 24 22 20 27 27 H 1.48506 * 109.47405 * 329.99681 * 24 22 20 28 28 H 4.38447 * 5.44342 * 179.97438 * 4 1 2 29 29 H 1.09007 * 109.46541 * 171.86320 * 3 2 1 30 30 H 1.08999 * 109.46856 * 51.87034 * 3 2 1 31 31 H 1.09002 * 109.46919 * 60.00270 * 5 4 3 32 32 H 1.09003 * 109.47681 * 300.00965 * 5 4 3 33 33 H 1.08995 * 109.46919 * 60.00697 * 6 5 4 34 34 H 1.08994 * 109.47016 * 300.00315 * 6 5 4 35 35 H 0.96994 * 119.99988 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.47446 * 64.98314 * 10 9 7 37 37 H 1.09007 * 109.47089 * 304.98199 * 10 9 7 38 38 H 1.08998 * 114.39158 * 27.42006 * 13 11 10 39 39 H 1.08996 * 114.08827 * 254.52983 * 13 11 10 40 40 H 1.08999 * 113.46889 * 218.98000 * 14 13 11 41 41 H 1.09003 * 113.51421 * 88.55330 * 14 13 11 42 42 H 1.09001 * 109.47014 * 59.99941 * 18 16 15 43 43 H 1.09002 * 109.47144 * 300.00108 * 18 16 15 44 44 H 0.97000 * 119.99275 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1227 -0.5008 1.2503 5 6 4.5472 -0.5427 1.3548 6 6 4.9420 -1.0935 2.7265 7 6 6.4444 -1.1371 2.8369 8 8 7.1316 -0.7639 1.9099 9 7 7.0242 -1.5899 3.9661 10 6 8.4846 -1.6318 4.0736 11 6 8.8800 -2.2965 5.3938 12 1 8.2985 -1.9320 6.2406 13 6 8.9484 -3.8304 5.3131 14 6 10.1763 -3.6424 6.2149 15 7 10.3304 -2.2989 5.6370 16 6 11.3509 -1.4437 5.4278 17 8 11.1602 -0.4073 4.8274 18 6 12.7289 -1.7753 5.9398 19 16 13.8718 -0.4414 5.5036 20 6 15.3607 -1.0734 6.2024 21 1 15.3568 -2.0264 6.7105 22 6 16.5388 -0.3464 6.0998 23 7 16.5436 0.8148 5.4800 24 14 18.1173 -1.0168 6.8400 25 1 18.8283 -1.8391 5.8284 26 1 18.9860 0.1124 7.2592 27 1 17.7928 -1.8565 8.0211 28 1 -1.0499 0.0001 0.0002 29 1 3.0089 1.0182 -0.1455 30 1 3.0096 -0.6337 -0.8084 31 1 4.9498 0.4634 1.2372 32 1 4.9500 -1.1886 0.5745 33 1 4.5394 -2.0996 2.8435 34 1 4.5392 -0.4479 3.5069 35 1 6.4745 -1.8881 4.7076 36 1 8.8803 -0.6166 4.0452 37 1 8.8940 -2.2047 3.2415 38 1 9.1779 -4.2192 4.3210 39 1 8.1135 -4.3389 5.7951 40 1 10.9989 -4.3156 5.9740 41 1 9.9374 -3.6327 7.2784 42 1 13.0696 -2.7072 5.4887 43 1 12.6967 -1.8868 7.0236 44 1 17.3668 1.3230 5.4087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285859679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:13 Heat of formation + Delta-G solvation = -22.587019 kcal Electronic energy + Delta-G solvation = -25251.746281 eV Core-core repulsion = 21298.891258 eV Total energy + Delta-G solvation = -3952.855023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.68077 -39.80370 -38.41306 -37.55404 -34.90498 -33.90872 -32.44078 -32.03897 -30.75941 -28.73688 -28.15251 -27.28620 -25.48853 -24.33448 -22.89760 -22.15574 -20.79836 -19.10227 -18.80012 -17.85486 -17.62883 -16.87994 -16.75983 -16.62106 -16.26944 -15.67406 -15.44389 -15.32494 -14.96026 -14.81233 -14.37389 -14.21070 -13.94375 -13.67269 -13.41737 -13.06037 -12.93306 -12.69621 -12.52735 -12.23928 -12.04703 -11.90858 -11.89299 -11.68874 -11.07504 -11.04597 -10.99854 -10.89781 -10.88760 -10.77361 -10.15997 -10.00871 -9.83738 -9.49351 -9.19374 -9.07724 -8.69940 -8.25302 -6.51844 -6.22598 -3.93659 1.98838 2.35019 2.38100 2.49114 2.91643 3.04365 3.21659 3.23914 3.29269 3.49870 3.60085 4.02509 4.10087 4.19032 4.35066 4.52450 4.60542 4.62481 4.74986 4.78374 4.84962 4.90470 4.93278 5.09392 5.12557 5.13910 5.28867 5.34499 5.39949 5.42615 5.45859 5.49880 5.61904 5.77851 5.81679 5.93210 6.00358 6.11490 6.22568 6.63295 7.10407 7.17739 7.58366 7.78083 7.95065 8.34025 8.48972 9.22538 10.84859 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024936 B = 0.001572 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.606464 B =17810.149678 C =18755.977425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.193 4.193 3 C 0.174 3.826 4 O -0.387 6.387 5 C 0.076 3.924 6 C -0.138 4.138 7 C 0.516 3.484 8 O -0.535 6.535 9 N -0.725 5.725 10 C 0.112 3.888 11 C 0.123 3.877 12 H 0.095 0.905 13 C -0.151 4.151 14 C 0.101 3.899 15 N -0.647 5.647 16 C 0.561 3.439 17 O -0.508 6.508 18 C -0.145 4.145 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.222 0.778 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.400 0.600 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.217 -10.140 -2.954 31.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.193 4.193 3 C 0.098 3.902 4 O -0.307 6.307 5 C 0.000 4.000 6 C -0.178 4.178 7 C 0.302 3.698 8 O -0.411 6.411 9 N -0.378 5.378 10 C -0.012 4.012 11 C 0.018 3.982 12 H 0.113 0.887 13 C -0.189 4.189 14 C -0.023 4.023 15 N -0.387 5.387 16 C 0.351 3.649 17 O -0.381 6.381 18 C -0.295 4.295 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.239 0.761 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.234 0.766 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -28.751 -8.045 -4.472 30.188 hybrid contribution 1.010 -1.687 1.533 2.493 sum -27.741 -9.732 -2.940 29.545 Atomic orbital electron populations 1.24992 0.95910 1.00416 0.97966 1.22571 0.93910 1.00843 1.01961 1.19061 0.84596 0.99575 0.86966 1.87846 1.21717 1.85980 1.35166 1.22174 0.79735 1.01516 0.96615 1.21443 0.92370 1.04745 0.99225 1.20341 0.89976 0.77161 0.82330 1.90778 1.65294 1.46878 1.38133 1.45813 1.07782 1.66585 1.17610 1.21631 0.79164 1.03481 0.96926 1.22820 0.83336 0.95050 0.96956 0.88708 1.23633 0.98695 0.94970 1.01613 1.22889 0.97799 0.83493 0.98069 1.49765 1.06386 1.19333 1.63247 1.20016 0.84653 0.81752 0.78490 1.90728 1.83461 1.24203 1.39731 1.23479 0.95126 1.07010 1.03889 1.85435 1.00634 1.22466 1.74693 1.22854 0.94567 1.08755 1.42258 0.90936 1.24991 0.98807 0.94653 0.95073 1.70021 1.28198 1.12117 1.39879 0.86163 0.81540 0.78520 0.79247 1.20242 1.20720 1.19696 0.76129 0.90494 0.90539 0.91793 0.91877 0.87863 0.87831 0.76572 0.89355 0.90468 0.88427 0.89233 0.89990 0.89734 0.89315 0.89283 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.18 19.25 29.55 0.57 -0.61 16 2 C -0.19 -1.60 13.73 -37.12 -0.51 -2.11 16 3 C 0.17 1.26 6.41 34.37 0.22 1.49 16 4 O -0.39 -3.44 10.30 -35.23 -0.36 -3.80 16 5 C 0.08 0.62 5.23 37.16 0.19 0.82 16 6 C -0.14 -0.94 6.07 -27.88 -0.17 -1.11 16 7 C 0.52 5.30 7.83 -10.98 -0.09 5.21 16 8 O -0.53 -8.10 15.98 5.55 0.09 -8.01 16 9 N -0.73 -6.14 5.55 -60.29 -0.33 -6.47 16 10 C 0.11 1.33 5.40 -4.04 -0.02 1.31 16 11 C 0.12 1.19 4.09 -72.25 -0.30 0.90 16 12 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 13 C -0.15 -1.01 8.03 -26.08 -0.21 -1.22 16 14 C 0.10 0.88 8.41 -8.50 -0.07 0.80 16 15 N -0.65 -8.78 3.56 -177.27 -0.63 -9.41 16 16 C 0.56 10.75 8.02 -10.99 -0.09 10.66 16 17 O -0.51 -11.76 15.24 5.56 0.08 -11.68 16 18 C -0.14 -2.97 5.99 36.01 0.22 -2.76 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 21 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 24 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H 0.22 0.65 7.80 -54.10 -0.42 0.22 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.40 1.87 8.48 -40.82 -0.35 1.52 16 36 H 0.09 1.43 7.05 -51.93 -0.37 1.07 16 37 H 0.08 1.04 7.90 -51.93 -0.41 0.63 16 38 H 0.10 0.71 7.97 -51.93 -0.41 0.30 16 39 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 401.68 15.07 6.05 6.05 Total: -1.00 -39.17 401.68 -8.23 -47.39 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.57 Total: -1.48 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.05 Total: 0.37 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: -0.23 Total: -41.42 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.19 Total: -23.49 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -39.17 -8.23 -47.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285859679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.808 kcal (2) G-P(sol) polarization free energy of solvation -39.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds