Wall clock time and date at job start Sat Apr 11 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47199 * 19.44691 * 3 2 1 5 5 C 1.42892 * 114.00081 * 179.97438 * 4 3 2 6 6 C 1.53008 * 109.47293 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47352 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99838 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00289 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00490 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47071 * 184.98349 * 10 9 7 12 12 H 1.09000 * 112.74430 * 45.13410 * 11 10 9 13 13 C 1.53495 * 113.46785 * 274.38696 * 11 10 9 14 14 C 1.53619 * 83.30542 * 219.17369 * 13 11 10 15 15 N 1.47064 * 88.00409 * 26.02296 * 14 13 11 16 16 C 1.34773 * 136.05719 * 152.90178 * 15 14 13 17 17 O 1.21279 * 120.00159 * 185.03073 * 16 15 14 18 18 C 1.50703 * 120.00095 * 5.02737 * 16 15 14 19 19 S 1.80994 * 109.47177 * 180.02562 * 18 16 15 20 20 C 1.76206 * 100.00213 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99355 * 359.97438 * 20 19 18 22 22 C 1.38792 * 120.00211 * 180.02562 * 20 19 18 23 23 N 1.31636 * 120.00068 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99990 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47206 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47093 * 119.99925 * 24 22 20 27 27 H 1.48501 * 109.47402 * 240.00125 * 24 22 20 28 28 H 4.38450 * 5.44426 * 179.97438 * 4 1 2 29 29 H 1.08991 * 109.47812 * 259.44392 * 3 2 1 30 30 H 1.09007 * 109.47120 * 139.44062 * 3 2 1 31 31 H 1.09001 * 109.47622 * 59.99412 * 5 4 3 32 32 H 1.09000 * 109.46994 * 299.99374 * 5 4 3 33 33 H 1.09001 * 109.47048 * 59.99328 * 6 5 4 34 34 H 1.09004 * 109.46742 * 300.00270 * 6 5 4 35 35 H 0.97001 * 119.99578 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.46651 * 64.97974 * 10 9 7 37 37 H 1.09004 * 109.46874 * 304.98488 * 10 9 7 38 38 H 1.08999 * 114.20522 * 332.73921 * 13 11 10 39 39 H 1.08997 * 114.20607 * 105.56835 * 13 11 10 40 40 H 1.09003 * 113.40860 * 271.23847 * 14 13 11 41 41 H 1.08995 * 113.55920 * 140.82867 * 14 13 11 42 42 H 1.08999 * 109.47196 * 300.00266 * 18 16 15 43 43 H 1.08999 * 109.47103 * 60.00327 * 18 16 15 44 44 H 0.97000 * 120.00169 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.2696 -0.4486 5 6 4.5474 -1.3751 -0.4867 6 6 4.9426 -2.7692 -0.9782 7 6 6.4449 -2.8803 -1.0190 8 8 7.1319 -1.9375 -0.6871 9 7 7.0251 -4.0277 -1.4233 10 6 8.4856 -4.1359 -1.4624 11 6 8.8809 -5.4833 -2.0698 12 1 8.3092 -5.7258 -2.9656 13 6 8.9262 -6.6258 -1.0457 14 6 10.1668 -7.0524 -1.8449 15 7 10.3328 -5.6456 -2.2399 16 6 11.3623 -4.8534 -2.5991 17 8 11.1792 -3.6695 -2.7882 18 6 12.7409 -5.4387 -2.7657 19 16 13.8969 -4.1321 -3.2479 20 6 15.3841 -5.0691 -3.3702 21 1 15.3726 -6.1295 -3.1657 22 6 16.5706 -4.4442 -3.7283 23 7 16.5849 -3.1514 -3.9760 24 14 18.1473 -5.4374 -3.8573 25 1 17.8654 -6.8584 -3.5307 26 1 18.6794 -5.3440 -5.2406 27 1 19.1506 -4.8995 -2.9036 28 1 -1.0498 -0.0004 0.0001 29 1 3.0093 0.1891 1.0101 30 1 3.0090 0.7816 -0.6683 31 1 4.9506 -1.2150 0.5133 32 1 4.9495 -0.6228 -1.1653 33 1 4.5394 -2.9297 -1.9781 34 1 4.5405 -3.5213 -0.2993 35 1 6.4756 -4.7818 -1.6883 36 1 8.8825 -4.0633 -0.4499 37 1 8.8935 -3.3291 -2.0714 38 1 9.1401 -6.3041 -0.0265 39 1 8.0892 -7.3206 -1.1140 40 1 9.9374 -7.7138 -2.6804 41 1 10.9789 -7.4270 -1.2218 42 1 13.0647 -5.8801 -1.8231 43 1 12.7184 -6.2075 -3.5381 44 1 17.4140 -2.7148 -4.2267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285859680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:16 Heat of formation + Delta-G solvation = -22.706522 kcal Electronic energy + Delta-G solvation = -25259.704528 eV Core-core repulsion = 21306.844323 eV Total energy + Delta-G solvation = -3952.860205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.68439 -39.79981 -38.40681 -37.55612 -34.89909 -33.90537 -32.44035 -32.03465 -30.76270 -28.72846 -28.15750 -27.28291 -25.49074 -24.33378 -22.90557 -22.14928 -20.78185 -19.09214 -18.80744 -17.84607 -17.65301 -16.87499 -16.76791 -16.61439 -16.28154 -15.62040 -15.44341 -15.33829 -14.95981 -14.81397 -14.34471 -14.22687 -13.94312 -13.67228 -13.41884 -13.04929 -12.91926 -12.69670 -12.52743 -12.28256 -12.04791 -11.91865 -11.89297 -11.69187 -11.07945 -11.04217 -10.99495 -10.89195 -10.83905 -10.76921 -10.15129 -10.00412 -9.82632 -9.48796 -9.21388 -9.08525 -8.69648 -8.24675 -6.51729 -6.22685 -3.93713 1.99236 2.35411 2.38706 2.49272 2.91960 3.04589 3.20826 3.24075 3.29998 3.50171 3.60371 4.02081 4.10498 4.18842 4.35556 4.52508 4.60796 4.62883 4.74865 4.79071 4.85604 4.90510 4.93804 5.09887 5.12548 5.13920 5.28456 5.34953 5.40394 5.41941 5.46241 5.49869 5.61883 5.77953 5.81664 5.93126 6.00743 6.11551 6.22761 6.63731 7.10758 7.18193 7.58674 7.78284 7.95780 8.34258 8.49329 9.22574 10.84814 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.001587 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.739508 B =17634.453286 C =18668.535140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.193 4.193 3 C 0.173 3.827 4 O -0.387 6.387 5 C 0.076 3.924 6 C -0.138 4.138 7 C 0.516 3.484 8 O -0.533 6.533 9 N -0.726 5.726 10 C 0.112 3.888 11 C 0.123 3.877 12 H 0.095 0.905 13 C -0.153 4.153 14 C 0.101 3.899 15 N -0.647 5.647 16 C 0.561 3.439 17 O -0.508 6.508 18 C -0.144 4.144 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.222 0.778 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.400 0.600 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.363 -5.776 8.032 30.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.193 4.193 3 C 0.098 3.902 4 O -0.307 6.307 5 C -0.001 4.001 6 C -0.178 4.178 7 C 0.301 3.699 8 O -0.410 6.410 9 N -0.378 5.378 10 C -0.012 4.012 11 C 0.018 3.982 12 H 0.113 0.887 13 C -0.190 4.190 14 C -0.022 4.022 15 N -0.387 5.387 16 C 0.351 3.649 17 O -0.381 6.381 18 C -0.295 4.295 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.239 0.761 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.234 0.766 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -28.884 -3.155 7.811 30.087 hybrid contribution 1.003 -2.294 -0.072 2.504 sum -27.881 -5.448 7.739 29.443 Atomic orbital electron populations 1.24988 0.95910 0.97889 1.00511 1.22568 0.93910 1.01992 1.00796 1.19063 0.84591 0.86528 1.00024 1.87847 1.21713 1.33202 1.87955 1.22176 0.79732 0.96510 1.01635 1.21443 0.92364 0.98948 1.05017 1.20346 0.89978 0.82474 0.77053 1.90784 1.65291 1.37541 1.47336 1.45810 1.07773 1.15645 1.68606 1.21634 0.79185 0.98105 1.02317 1.22764 0.83237 0.94527 0.97632 0.88689 1.23621 0.98697 0.97725 0.98989 1.22905 0.97545 0.84185 0.97580 1.49748 1.06103 1.12094 1.70794 1.20017 0.84599 0.85676 0.74640 1.90732 1.83772 1.14988 1.48573 1.23477 0.95122 1.05983 1.04903 1.85447 0.99945 1.08796 1.89082 1.22893 0.94159 0.96913 1.54376 0.90882 1.24992 0.98821 0.95167 0.94572 1.70031 1.27789 1.08845 1.43553 0.86112 0.81669 0.79712 0.77966 1.19612 1.20551 1.20534 0.76133 0.90531 0.90487 0.91868 0.91784 0.87839 0.87866 0.76592 0.90843 0.88995 0.88427 0.89181 0.89746 0.89979 0.89317 0.89284 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 19.25 29.55 0.57 -0.62 16 2 C -0.19 -1.61 13.73 -37.12 -0.51 -2.12 16 3 C 0.17 1.28 6.41 34.37 0.22 1.50 16 4 O -0.39 -3.46 10.30 -35.23 -0.36 -3.83 16 5 C 0.08 0.63 5.23 37.16 0.19 0.83 16 6 C -0.14 -0.95 6.07 -27.88 -0.17 -1.12 16 7 C 0.52 5.35 7.83 -10.99 -0.09 5.27 16 8 O -0.53 -8.19 15.98 5.55 0.09 -8.11 16 9 N -0.73 -6.16 5.55 -60.30 -0.33 -6.49 16 10 C 0.11 1.33 5.39 -4.05 -0.02 1.31 16 11 C 0.12 1.20 4.08 -72.39 -0.30 0.90 16 12 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 13 C -0.15 -0.99 8.02 -26.15 -0.21 -1.20 16 14 C 0.10 0.87 8.42 -8.44 -0.07 0.80 16 15 N -0.65 -8.79 3.57 -177.24 -0.63 -9.42 16 16 C 0.56 10.77 8.02 -10.99 -0.09 10.68 16 17 O -0.51 -11.80 15.24 5.56 0.08 -11.72 16 18 C -0.14 -2.97 5.99 36.01 0.22 -2.76 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 24 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.22 0.65 7.80 -54.10 -0.42 0.23 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.40 1.84 8.48 -40.82 -0.35 1.49 16 36 H 0.07 0.96 7.90 -51.93 -0.41 0.55 16 37 H 0.09 1.52 7.04 -51.93 -0.37 1.15 16 38 H 0.10 0.69 7.95 -51.93 -0.41 0.27 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 401.64 15.07 6.05 6.05 Total: -1.00 -39.31 401.64 -8.23 -47.54 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -6.57 Total: -1.51 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -0.05 Total: 0.47 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: -0.23 Total: -41.47 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.19 Total: -23.65 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -39.31 -8.23 -47.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285859680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.835 kcal (2) G-P(sol) polarization free energy of solvation -39.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds