Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47199 * 19.44691 * 3 2 1 5 5 C 1.42892 * 114.00081 * 179.97438 * 4 3 2 6 6 C 1.53008 * 109.47293 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47352 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99838 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00289 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00490 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47071 * 184.98349 * 10 9 7 12 12 H 1.09000 * 112.74430 * 45.13410 * 11 10 9 13 13 C 1.53495 * 113.46785 * 274.38696 * 11 10 9 14 14 C 1.53619 * 83.30542 * 219.17369 * 13 11 10 15 15 N 1.47064 * 88.00409 * 26.02296 * 14 13 11 16 16 C 1.34773 * 136.05719 * 152.90178 * 15 14 13 17 17 O 1.21279 * 120.00159 * 185.03073 * 16 15 14 18 18 C 1.50703 * 120.00095 * 5.02737 * 16 15 14 19 19 S 1.80994 * 109.47177 * 180.02562 * 18 16 15 20 20 C 1.76206 * 100.00213 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99355 * 359.97438 * 20 19 18 22 22 C 1.38792 * 120.00211 * 180.02562 * 20 19 18 23 23 N 1.31636 * 120.00068 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99990 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47206 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47093 * 119.99925 * 24 22 20 27 27 H 1.48501 * 109.47402 * 240.00125 * 24 22 20 28 28 H 4.38450 * 5.44426 * 179.97438 * 4 1 2 29 29 H 1.08991 * 109.47812 * 259.44392 * 3 2 1 30 30 H 1.09007 * 109.47120 * 139.44062 * 3 2 1 31 31 H 1.09001 * 109.47622 * 59.99412 * 5 4 3 32 32 H 1.09000 * 109.46994 * 299.99374 * 5 4 3 33 33 H 1.09001 * 109.47048 * 59.99328 * 6 5 4 34 34 H 1.09004 * 109.46742 * 300.00270 * 6 5 4 35 35 H 0.97001 * 119.99578 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.46651 * 64.97974 * 10 9 7 37 37 H 1.09004 * 109.46874 * 304.98488 * 10 9 7 38 38 H 1.08999 * 114.20522 * 332.73921 * 13 11 10 39 39 H 1.08997 * 114.20607 * 105.56835 * 13 11 10 40 40 H 1.09003 * 113.40860 * 271.23847 * 14 13 11 41 41 H 1.08995 * 113.55920 * 140.82867 * 14 13 11 42 42 H 1.08999 * 109.47196 * 300.00266 * 18 16 15 43 43 H 1.08999 * 109.47103 * 60.00327 * 18 16 15 44 44 H 0.97000 * 120.00169 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.2696 -0.4486 5 6 4.5474 -1.3751 -0.4867 6 6 4.9426 -2.7692 -0.9782 7 6 6.4449 -2.8803 -1.0190 8 8 7.1319 -1.9375 -0.6871 9 7 7.0251 -4.0277 -1.4233 10 6 8.4856 -4.1359 -1.4624 11 6 8.8809 -5.4833 -2.0698 12 1 8.3092 -5.7258 -2.9656 13 6 8.9262 -6.6258 -1.0457 14 6 10.1668 -7.0524 -1.8449 15 7 10.3328 -5.6456 -2.2399 16 6 11.3623 -4.8534 -2.5991 17 8 11.1792 -3.6695 -2.7882 18 6 12.7409 -5.4387 -2.7657 19 16 13.8969 -4.1321 -3.2479 20 6 15.3841 -5.0691 -3.3702 21 1 15.3726 -6.1295 -3.1657 22 6 16.5706 -4.4442 -3.7283 23 7 16.5849 -3.1514 -3.9760 24 14 18.1473 -5.4374 -3.8573 25 1 17.8654 -6.8584 -3.5307 26 1 18.6794 -5.3440 -5.2406 27 1 19.1506 -4.8995 -2.9036 28 1 -1.0498 -0.0004 0.0001 29 1 3.0093 0.1891 1.0101 30 1 3.0090 0.7816 -0.6683 31 1 4.9506 -1.2150 0.5133 32 1 4.9495 -0.6228 -1.1653 33 1 4.5394 -2.9297 -1.9781 34 1 4.5405 -3.5213 -0.2993 35 1 6.4756 -4.7818 -1.6883 36 1 8.8825 -4.0633 -0.4499 37 1 8.8935 -3.3291 -2.0714 38 1 9.1401 -6.3041 -0.0265 39 1 8.0892 -7.3206 -1.1140 40 1 9.9374 -7.7138 -2.6804 41 1 10.9789 -7.4270 -1.2218 42 1 13.0647 -5.8801 -1.8231 43 1 12.7184 -6.2075 -3.5381 44 1 17.4140 -2.7148 -4.2267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285859680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = -53.076401 kcal Electronic energy + Delta-G solvation = -25261.021465 eV Core-core repulsion = 21306.844323 eV Total energy + Delta-G solvation = -3954.177142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66284 -40.72198 -39.10359 -38.86578 -35.83427 -34.61205 -34.46780 -32.75270 -32.08385 -29.54313 -29.45694 -27.88077 -27.66506 -25.05572 -23.66948 -23.14865 -21.62462 -20.28539 -19.57159 -19.35291 -18.49986 -17.99317 -17.54418 -17.50252 -17.14631 -16.91018 -16.70153 -16.43267 -16.31018 -15.90928 -15.65587 -15.41435 -15.03569 -14.66337 -14.52050 -14.20527 -13.89797 -13.82503 -13.59595 -13.40543 -13.17242 -12.98940 -12.92539 -12.66590 -12.62711 -12.51290 -12.40710 -11.73984 -11.66044 -11.55799 -11.47227 -11.18114 -11.08325 -10.85427 -10.60416 -10.30858 -10.19830 -9.78723 -8.71342 -8.36956 -6.16431 1.16520 1.37994 1.40326 1.43755 1.53610 1.55398 1.56134 1.81230 1.83010 2.23685 2.26314 2.96126 2.97378 3.18702 3.34258 3.59502 3.67093 3.68535 3.74818 3.99693 4.02863 4.05021 4.20259 4.23129 4.29492 4.41981 4.42406 4.47958 4.51628 4.60603 4.69501 4.75141 4.78343 4.82743 4.99634 5.01971 5.03373 5.26394 5.38140 5.39194 6.02270 6.17511 6.48150 6.58635 6.60703 7.03995 7.09368 7.21518 8.72760 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.001587 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.739508 B =17634.453286 C =18668.535140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.240 4.240 3 C 0.166 3.834 4 O -0.396 6.396 5 C 0.076 3.924 6 C -0.124 4.124 7 C 0.512 3.488 8 O -0.592 6.592 9 N -0.704 5.704 10 C 0.120 3.880 11 C 0.120 3.880 12 H 0.126 0.874 13 C -0.124 4.124 14 C 0.094 3.906 15 N -0.652 5.652 16 C 0.555 3.445 17 O -0.566 6.566 18 C -0.117 4.117 19 S -0.156 6.156 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.913 5.913 24 Si 1.001 2.999 25 H -0.255 1.255 26 H -0.273 1.273 27 H -0.274 1.274 28 H 0.254 0.746 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.424 0.576 36 H 0.055 0.945 37 H 0.038 0.962 38 H 0.092 0.908 39 H 0.141 0.859 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.592 -9.886 8.478 34.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.240 4.240 3 C 0.091 3.909 4 O -0.317 6.317 5 C -0.001 4.001 6 C -0.164 4.164 7 C 0.300 3.700 8 O -0.473 6.473 9 N -0.358 5.358 10 C -0.006 4.006 11 C 0.017 3.983 12 H 0.143 0.857 13 C -0.161 4.161 14 C -0.027 4.027 15 N -0.389 5.389 16 C 0.345 3.655 17 O -0.444 6.444 18 C -0.268 4.268 19 S 0.072 5.928 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.549 5.549 24 Si 0.823 3.177 25 H -0.178 1.178 26 H -0.198 1.198 27 H -0.199 1.199 28 H 0.271 0.729 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.263 0.737 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.111 0.889 39 H 0.159 0.841 40 H 0.133 0.867 41 H 0.105 0.895 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -31.194 -7.373 8.268 33.103 hybrid contribution 1.479 -1.059 -0.159 1.826 sum -29.715 -8.431 8.109 31.934 Atomic orbital electron populations 1.25871 0.96803 0.96096 0.98829 1.23042 0.94787 1.03712 1.02460 1.19215 0.84703 0.86160 1.00794 1.87809 1.21641 1.34082 1.88127 1.22139 0.79620 0.97254 1.01108 1.21395 0.89242 0.98788 1.06932 1.21045 0.91364 0.81874 0.75738 1.90769 1.66845 1.39655 1.49987 1.45564 1.06489 1.16152 1.67624 1.21307 0.80938 0.97976 1.00344 1.23205 0.80807 0.94248 1.00066 0.85688 1.23580 0.99155 0.96059 0.97318 1.23390 0.98714 0.81584 0.99045 1.49821 1.06792 1.14261 1.68048 1.19708 0.85380 0.85406 0.75044 1.90712 1.84679 1.17425 1.51608 1.23260 0.94460 1.03268 1.05815 1.85665 1.03030 1.14242 1.89907 1.23217 0.94382 0.97249 1.54413 0.89856 1.26164 1.02941 0.96315 0.93736 1.70203 1.28985 1.11048 1.44667 0.84873 0.76199 0.78498 0.78163 1.17824 1.19841 1.19920 0.72947 0.89539 0.89838 0.92509 0.93079 0.85671 0.84970 0.73713 0.92708 0.94388 0.88903 0.84112 0.86688 0.89515 0.87780 0.87516 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 19.25 74.32 1.43 -0.47 16 2 C -0.24 -3.88 13.73 31.13 0.43 -3.45 16 3 C 0.17 2.48 6.41 70.18 0.45 2.93 16 4 O -0.40 -6.89 10.30 -148.98 -1.53 -8.43 16 5 C 0.08 1.25 5.23 71.98 0.38 1.63 16 6 C -0.12 -1.50 6.07 29.85 0.18 -1.32 16 7 C 0.51 10.52 7.83 87.65 0.69 11.21 16 8 O -0.59 -19.38 15.98 -3.04 -0.05 -19.43 16 9 N -0.70 -10.98 5.55 -463.08 -2.57 -13.55 16 10 C 0.12 2.89 5.39 86.38 0.47 3.35 16 11 C 0.12 2.03 4.08 41.79 0.17 2.20 16 12 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 13 C -0.12 -1.03 8.02 30.97 0.25 -0.78 16 14 C 0.09 1.23 8.42 83.22 0.70 1.93 16 15 N -0.65 -16.76 3.57 -833.05 -2.97 -19.73 16 16 C 0.56 21.84 8.02 87.66 0.70 22.54 16 17 O -0.57 -28.13 15.24 -3.03 -0.05 -28.18 16 18 C -0.12 -4.86 5.99 71.24 0.43 -4.43 16 19 S -0.16 -8.94 20.57 -56.49 -1.16 -10.11 16 20 C -0.54 -31.65 9.50 67.95 0.65 -31.01 16 21 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 22 C 0.01 0.75 5.49 84.85 0.47 1.22 16 23 N -0.91 -57.08 13.22 21.65 0.29 -56.79 16 24 Si 1.00 43.99 29.55 68.60 2.03 46.01 16 25 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 28 H 0.25 0.80 7.80 -4.43 -0.03 0.77 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 32 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 33 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.42 2.38 8.48 -92.71 -0.79 1.59 16 36 H 0.05 1.50 7.90 -2.39 -0.02 1.49 16 37 H 0.04 1.36 7.04 -2.38 -0.02 1.34 16 38 H 0.09 0.96 7.95 -2.39 -0.02 0.94 16 39 H 0.14 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 43 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 44 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -95.11 401.64 1.58 -93.53 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.22 Total: 11.11 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 7.38 Total: 5.55 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -5.26 Total: -90.07 kcal Atomic # 8 Polarization: -54.41 SS G_CDS: -1.63 Total: -56.03 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.16 Total: -10.11 kcal Total: -95.11 1.58 -93.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285859680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.458 kcal (2) G-P(sol) polarization free energy of solvation -95.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds