Wall clock time and date at job start Sat Apr 11 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46936 * 2 1 4 4 C 1.52997 * 109.47209 * 239.99819 * 2 1 3 5 5 C 1.52999 * 109.47080 * 175.00208 * 4 2 1 6 6 H 1.09004 * 109.47434 * 54.99895 * 5 4 2 7 7 C 1.52997 * 109.47114 * 174.99701 * 5 4 2 8 8 N 1.46498 * 109.46963 * 294.99494 * 5 4 2 9 9 C 1.34777 * 119.99828 * 154.72290 * 8 5 4 10 10 O 1.21693 * 120.00014 * 0.28042 * 9 8 5 11 11 C 1.46660 * 120.00141 * 180.27920 * 9 8 5 12 12 C 1.36544 * 125.98820 * 179.72046 * 11 9 8 13 13 C 1.40365 * 106.70462 * 179.90699 * 12 11 9 14 14 C 1.35120 * 107.11725 * 0.34924 * 13 12 11 15 15 O 1.33931 * 108.76903 * 359.78092 * 14 13 12 16 16 N 1.46495 * 109.46926 * 119.99527 * 2 1 3 17 17 C 1.34775 * 120.00457 * 275.00188 * 16 2 1 18 18 O 1.21285 * 119.99872 * 0.02562 * 17 16 2 19 19 C 1.50700 * 120.00479 * 179.97438 * 17 16 2 20 20 S 1.81004 * 109.47237 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99873 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00519 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99991 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00096 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99855 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47140 * 90.00218 * 25 23 21 27 27 H 1.48494 * 109.47116 * 210.00221 * 25 23 21 28 28 H 1.48500 * 109.47264 * 330.00332 * 25 23 21 29 29 H 1.08997 * 109.46639 * 60.00527 * 1 2 3 30 30 H 1.09002 * 109.46936 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46920 * 300.00659 * 1 2 3 32 32 H 1.08997 * 109.47302 * 54.99671 * 4 2 1 33 33 H 1.09007 * 109.46917 * 295.00206 * 4 2 1 34 34 H 1.08997 * 109.47293 * 179.97438 * 7 5 4 35 35 H 1.09003 * 109.47189 * 300.00067 * 7 5 4 36 36 H 1.09009 * 109.47238 * 59.99946 * 7 5 4 37 37 H 0.97001 * 120.00384 * 335.00737 * 8 5 4 38 38 H 1.08002 * 126.64439 * 0.03250 * 12 11 9 39 39 H 1.08005 * 126.44135 * 180.14996 * 13 12 11 40 40 H 1.08006 * 125.61800 * 179.77667 * 14 13 12 41 41 H 0.97009 * 120.00171 * 95.00238 * 16 2 1 42 42 H 1.09000 * 109.47236 * 300.00369 * 19 17 16 43 43 H 1.09001 * 109.46734 * 60.00173 * 19 17 16 44 44 H 0.97002 * 120.00595 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.9955 -0.9923 -0.3867 7 6 4.0852 -1.4384 -2.4923 8 7 3.9480 0.7893 -1.4925 9 6 5.1591 1.2147 -1.0816 10 8 5.9363 0.4326 -0.5667 11 6 5.5403 2.6202 -1.2551 12 6 6.7274 3.1817 -0.8808 13 6 6.6621 4.5380 -1.2364 14 6 5.4504 4.7441 -1.7978 15 8 4.7774 3.5862 -1.8073 16 7 2.0183 -0.6905 1.1962 17 6 2.1470 -0.0182 2.3572 18 8 1.8581 1.1585 2.4117 19 6 2.6488 -0.7286 3.5878 20 16 2.7105 0.4348 4.9731 21 6 3.3120 -0.6308 6.2409 22 1 3.5207 -1.6674 6.0212 23 6 3.5177 -0.1380 7.5221 24 7 3.9675 -0.9338 8.4691 25 14 3.1574 1.6552 7.9020 26 1 1.7463 1.7938 8.3434 27 1 4.0622 2.1238 8.9822 28 1 3.3772 2.4734 6.6824 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6055 -0.2619 -2.1369 33 1 1.7517 -1.7716 -1.2055 34 1 5.1715 -1.3612 -2.5384 35 1 3.8002 -2.4821 -2.3592 36 1 3.6547 -1.0595 -3.4193 37 1 3.3285 1.4128 -1.9028 38 1 7.5567 2.6790 -0.4054 39 1 7.4339 5.2784 -1.0862 40 1 5.0848 5.6872 -2.1764 41 1 2.2491 -1.6317 1.1527 42 1 1.9759 -1.5504 3.8327 43 1 3.6479 -1.1211 3.3987 44 1 4.1109 -0.5896 9.3645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001288504766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:26 Heat of formation + Delta-G solvation = -69.041869 kcal Electronic energy + Delta-G solvation = -27136.672587 eV Core-core repulsion = 23181.803130 eV Total energy + Delta-G solvation = -3954.869457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.89405 -40.12143 -39.26773 -37.03017 -34.82343 -33.32510 -32.40699 -32.10866 -31.23168 -29.71088 -28.64321 -27.11199 -25.57660 -24.11114 -22.14489 -21.92870 -21.14205 -20.68380 -20.24769 -18.83509 -17.82975 -16.81116 -16.58475 -16.51349 -16.37057 -15.94943 -15.07589 -14.92320 -14.83546 -14.50196 -14.32267 -13.88617 -13.66008 -13.44501 -13.30184 -13.23260 -12.97601 -12.87761 -12.76576 -12.69596 -12.45409 -12.40771 -12.04207 -11.62882 -11.23335 -11.21973 -11.00099 -10.98147 -10.55685 -10.45539 -10.29750 -9.82697 -9.46703 -9.43928 -8.99661 -8.94624 -8.90583 -8.46150 -6.87391 -6.25544 -3.96623 0.84638 2.12684 2.42175 2.80238 2.94616 3.02486 3.02673 3.33309 3.36489 3.53242 3.69407 4.21920 4.36258 4.42006 4.51415 4.66695 4.76633 4.78554 4.80053 5.06013 5.11515 5.13605 5.20978 5.28467 5.34149 5.38201 5.41630 5.47703 5.53237 5.58657 5.63264 5.75361 5.81650 5.89962 5.93810 6.06483 6.07382 6.12623 6.15680 6.55575 6.61178 7.20422 7.64534 7.87418 7.97657 8.45441 8.54051 9.20790 10.83841 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009725 B = 0.003256 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.527148 B = 8598.474085 C =10149.394831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.136 4.136 5 C 0.139 3.861 6 H 0.096 0.904 7 C -0.163 4.163 8 N -0.714 5.714 9 C 0.606 3.394 10 O -0.514 6.514 11 C -0.080 4.080 12 C -0.118 4.118 13 C -0.224 4.224 14 C -0.008 4.008 15 O -0.165 6.165 16 N -0.732 5.732 17 C 0.533 3.467 18 O -0.519 6.519 19 C -0.125 4.125 20 S -0.142 6.142 21 C -0.520 4.520 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.881 5.881 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.236 1.236 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.404 0.596 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.210 0.790 41 H 0.398 0.602 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.484 4.586 -28.160 28.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.174 4.174 5 C 0.035 3.965 6 H 0.114 0.886 7 C -0.222 4.222 8 N -0.366 5.366 9 C 0.392 3.608 10 O -0.390 6.390 11 C -0.132 4.132 12 C -0.138 4.138 13 C -0.243 4.243 14 C -0.077 4.077 15 O -0.061 6.061 16 N -0.386 5.386 17 C 0.319 3.681 18 O -0.394 6.394 19 C -0.275 4.275 20 S 0.084 5.916 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.518 5.518 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.238 0.762 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.227 0.773 41 H 0.232 0.768 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.659 5.872 -27.617 28.283 hybrid contribution 0.260 -0.685 0.267 0.780 sum -1.398 5.187 -27.350 27.873 Atomic orbital electron populations 1.22186 0.95183 1.02166 1.02669 1.20895 0.93990 0.97775 0.83712 0.89403 1.22256 0.94172 1.02674 0.98302 1.21078 0.94512 0.80622 1.00298 0.88562 1.22189 1.02245 0.99964 0.97779 1.45918 1.16581 1.11622 1.62454 1.16516 0.82249 0.83861 0.78146 1.90910 1.51285 1.53328 1.43509 1.22076 0.93149 0.89762 1.08169 1.22028 0.97675 0.94173 0.99962 1.21886 0.99358 0.97086 1.05998 1.24401 0.92293 0.88688 1.02360 1.84038 1.42046 1.17180 1.62802 1.46041 1.69224 1.13886 1.09462 1.20255 0.76745 0.87210 0.83870 1.90687 1.48487 1.15726 1.84479 1.23284 1.04499 1.03415 0.96324 1.84754 1.87147 1.16613 1.03050 1.22328 1.50558 0.98678 0.95228 0.89396 1.24703 0.93376 0.98229 0.94955 1.69936 1.43562 1.35786 1.02494 0.86742 0.79260 0.85359 0.80541 1.19230 1.19943 1.15949 0.91939 0.92417 0.91631 0.89689 0.89311 0.91852 0.91251 0.92375 0.76164 0.82138 0.82531 0.77329 0.76790 0.88564 0.88500 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 2 C 0.14 1.45 2.52 -67.93 -0.17 1.28 16 3 H 0.09 1.11 7.06 -51.93 -0.37 0.74 16 4 C -0.14 -0.90 4.29 -26.73 -0.11 -1.02 16 5 C 0.14 1.22 2.52 -67.93 -0.17 1.05 16 6 H 0.10 1.09 7.05 -51.93 -0.37 0.73 16 7 C -0.16 -1.21 9.49 37.16 0.35 -0.85 16 8 N -0.71 -7.09 4.44 -55.12 -0.24 -7.33 16 9 C 0.61 8.03 7.75 -12.86 -0.10 7.93 16 10 O -0.51 -8.48 16.52 5.20 0.09 -8.39 16 11 C -0.08 -0.98 7.13 -36.80 -0.26 -1.24 16 12 C -0.12 -1.37 10.62 -39.39 -0.42 -1.79 16 13 C -0.22 -2.00 10.87 -39.89 -0.43 -2.44 16 14 C -0.01 -0.06 12.08 29.62 0.36 0.30 16 15 O -0.17 -1.70 10.40 5.00 0.05 -1.65 16 16 N -0.73 -9.13 4.45 -53.81 -0.24 -9.37 16 17 C 0.53 9.61 7.81 -10.99 -0.09 9.52 16 18 O -0.52 -11.28 15.53 5.55 0.09 -11.19 16 19 C -0.12 -2.49 6.16 36.01 0.22 -2.27 16 20 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 21 C -0.52 -15.34 10.04 30.94 0.31 -15.03 16 22 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 23 C 0.10 2.86 5.50 -17.43 -0.10 2.76 16 24 N -0.88 -27.05 13.97 55.49 0.78 -26.28 16 25 Si 0.86 22.23 27.74 -169.99 -4.71 17.51 16 26 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.24 -6.13 6.74 56.52 0.38 -5.75 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 37 H 0.40 3.20 8.36 -40.82 -0.34 2.86 16 38 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.21 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.40 3.90 8.60 -40.82 -0.35 3.55 16 42 H 0.10 1.78 8.14 -51.92 -0.42 1.35 16 43 H 0.10 1.86 8.14 -51.91 -0.42 1.44 16 44 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -37.83 391.82 -7.05 -44.88 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.50 Total: 4.61 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -0.26 Total: -3.01 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.29 Total: -42.98 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.22 Total: -21.23 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.51 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.83 -7.05 -44.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001288504766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.162 kcal (2) G-P(sol) polarization free energy of solvation -37.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds