Wall clock time and date at job start Sat Apr 11 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46936 * 2 1 4 4 C 1.52997 * 109.47209 * 239.99819 * 2 1 3 5 5 C 1.52999 * 109.47080 * 175.00208 * 4 2 1 6 6 H 1.09004 * 109.47434 * 54.99895 * 5 4 2 7 7 C 1.52997 * 109.47114 * 174.99701 * 5 4 2 8 8 N 1.46498 * 109.46963 * 294.99494 * 5 4 2 9 9 C 1.34777 * 119.99828 * 154.72290 * 8 5 4 10 10 O 1.21693 * 120.00014 * 0.28042 * 9 8 5 11 11 C 1.46660 * 120.00141 * 180.27920 * 9 8 5 12 12 C 1.36544 * 125.98820 * 179.72046 * 11 9 8 13 13 C 1.40365 * 106.70462 * 179.90699 * 12 11 9 14 14 C 1.35120 * 107.11725 * 0.34924 * 13 12 11 15 15 O 1.33931 * 108.76903 * 359.78092 * 14 13 12 16 16 N 1.46495 * 109.46926 * 119.99527 * 2 1 3 17 17 C 1.34775 * 120.00457 * 275.00188 * 16 2 1 18 18 O 1.21285 * 119.99872 * 0.02562 * 17 16 2 19 19 C 1.50700 * 120.00479 * 179.97438 * 17 16 2 20 20 S 1.81004 * 109.47237 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99873 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00519 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99991 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00096 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99855 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47140 * 90.00218 * 25 23 21 27 27 H 1.48494 * 109.47116 * 210.00221 * 25 23 21 28 28 H 1.48500 * 109.47264 * 330.00332 * 25 23 21 29 29 H 1.08997 * 109.46639 * 60.00527 * 1 2 3 30 30 H 1.09002 * 109.46936 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46920 * 300.00659 * 1 2 3 32 32 H 1.08997 * 109.47302 * 54.99671 * 4 2 1 33 33 H 1.09007 * 109.46917 * 295.00206 * 4 2 1 34 34 H 1.08997 * 109.47293 * 179.97438 * 7 5 4 35 35 H 1.09003 * 109.47189 * 300.00067 * 7 5 4 36 36 H 1.09009 * 109.47238 * 59.99946 * 7 5 4 37 37 H 0.97001 * 120.00384 * 335.00737 * 8 5 4 38 38 H 1.08002 * 126.64439 * 0.03250 * 12 11 9 39 39 H 1.08005 * 126.44135 * 180.14996 * 13 12 11 40 40 H 1.08006 * 125.61800 * 179.77667 * 14 13 12 41 41 H 0.97009 * 120.00171 * 95.00238 * 16 2 1 42 42 H 1.09000 * 109.47236 * 300.00369 * 19 17 16 43 43 H 1.09001 * 109.46734 * 60.00173 * 19 17 16 44 44 H 0.97002 * 120.00595 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.9955 -0.9923 -0.3867 7 6 4.0852 -1.4384 -2.4923 8 7 3.9480 0.7893 -1.4925 9 6 5.1591 1.2147 -1.0816 10 8 5.9363 0.4326 -0.5667 11 6 5.5403 2.6202 -1.2551 12 6 6.7274 3.1817 -0.8808 13 6 6.6621 4.5380 -1.2364 14 6 5.4504 4.7441 -1.7978 15 8 4.7774 3.5862 -1.8073 16 7 2.0183 -0.6905 1.1962 17 6 2.1470 -0.0182 2.3572 18 8 1.8581 1.1585 2.4117 19 6 2.6488 -0.7286 3.5878 20 16 2.7105 0.4348 4.9731 21 6 3.3120 -0.6308 6.2409 22 1 3.5207 -1.6674 6.0212 23 6 3.5177 -0.1380 7.5221 24 7 3.9675 -0.9338 8.4691 25 14 3.1574 1.6552 7.9020 26 1 1.7463 1.7938 8.3434 27 1 4.0622 2.1238 8.9822 28 1 3.3772 2.4734 6.6824 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6055 -0.2619 -2.1369 33 1 1.7517 -1.7716 -1.2055 34 1 5.1715 -1.3612 -2.5384 35 1 3.8002 -2.4821 -2.3592 36 1 3.6547 -1.0595 -3.4193 37 1 3.3285 1.4128 -1.9028 38 1 7.5567 2.6790 -0.4054 39 1 7.4339 5.2784 -1.0862 40 1 5.0848 5.6872 -2.1764 41 1 2.2491 -1.6317 1.1527 42 1 1.9759 -1.5504 3.8327 43 1 3.6479 -1.1211 3.3987 44 1 4.1109 -0.5896 9.3645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001288504766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:25 Heat of formation + Delta-G solvation = -97.334033 kcal Electronic energy + Delta-G solvation = -27137.899427 eV Core-core repulsion = 23181.803130 eV Total energy + Delta-G solvation = -3956.096297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.65835 -41.13990 -40.48547 -38.03580 -35.86339 -34.69955 -34.09866 -33.15889 -32.22293 -30.48202 -30.03166 -27.87713 -27.75924 -24.92537 -23.03108 -22.75441 -22.02609 -21.61628 -21.31717 -19.95918 -19.59455 -18.00721 -17.59357 -17.41413 -17.34273 -17.12397 -16.91897 -16.42075 -15.86566 -15.78567 -15.39053 -15.03450 -15.01070 -14.78335 -14.48420 -14.21506 -14.00296 -13.79525 -13.68139 -13.59310 -13.37981 -13.32598 -13.12017 -13.04054 -12.96527 -12.65260 -12.45394 -11.96885 -11.88303 -11.74940 -11.45748 -11.19437 -11.08500 -10.97077 -10.57452 -10.31073 -10.11966 -9.66533 -9.02251 -8.53987 -6.24934 0.00098 0.96613 1.28400 1.39851 1.44255 1.53780 1.57106 1.63764 2.07237 2.19660 2.22212 2.27823 2.69900 2.84096 3.51288 3.71807 3.81661 3.90407 3.91945 4.09528 4.12461 4.18812 4.35354 4.42251 4.43702 4.49413 4.59035 4.71539 4.75731 4.82212 4.85868 4.91167 4.92891 5.06149 5.13316 5.29307 5.33705 5.35979 5.38678 5.56685 5.68282 5.79912 6.08545 6.38392 6.47570 6.90974 6.98624 7.21178 8.58780 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009725 B = 0.003256 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.527148 B = 8598.474085 C =10149.394831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 H 0.063 0.937 4 C -0.120 4.120 5 C 0.133 3.867 6 H 0.067 0.933 7 C -0.156 4.156 8 N -0.701 5.701 9 C 0.598 3.402 10 O -0.562 6.562 11 C -0.111 4.111 12 C -0.135 4.135 13 C -0.237 4.237 14 C 0.011 3.989 15 O -0.167 6.167 16 N -0.708 5.708 17 C 0.535 3.465 18 O -0.561 6.561 19 C -0.113 4.113 20 S -0.174 6.174 21 C -0.531 4.531 22 H 0.060 0.940 23 C 0.047 3.953 24 N -0.917 5.917 25 Si 0.915 3.085 26 H -0.259 1.259 27 H -0.257 1.257 28 H -0.240 1.240 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.035 0.965 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.414 0.586 38 H 0.151 0.849 39 H 0.181 0.819 40 H 0.258 0.742 41 H 0.414 0.586 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 5.552 -30.937 31.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 H 0.082 0.918 4 C -0.158 4.158 5 C 0.030 3.970 6 H 0.085 0.915 7 C -0.214 4.214 8 N -0.352 5.352 9 C 0.385 3.615 10 O -0.443 6.443 11 C -0.162 4.162 12 C -0.156 4.156 13 C -0.256 4.256 14 C -0.058 4.058 15 O -0.063 6.063 16 N -0.362 5.362 17 C 0.321 3.679 18 O -0.440 6.440 19 C -0.264 4.264 20 S 0.052 5.948 21 C -0.679 4.679 22 H 0.079 0.921 23 C -0.159 4.159 24 N -0.555 5.555 25 Si 0.736 3.264 26 H -0.183 1.183 27 H -0.181 1.181 28 H -0.164 1.164 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.055 0.945 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.251 0.749 38 H 0.169 0.831 39 H 0.199 0.801 40 H 0.274 0.726 41 H 0.251 0.749 42 H 0.132 0.868 43 H 0.122 0.878 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.386 6.792 -30.449 31.381 hybrid contribution 0.790 -1.027 0.980 1.625 sum -2.595 5.765 -29.469 30.140 Atomic orbital electron populations 1.22134 0.93969 1.03206 1.02276 1.21136 0.94842 0.96898 0.83853 0.91845 1.22240 0.92038 1.04225 0.97275 1.21215 0.96056 0.79983 0.99786 0.91487 1.22123 1.00535 1.00927 0.97823 1.45912 1.15598 1.12482 1.61182 1.16772 0.82746 0.84170 0.77811 1.90866 1.52784 1.54651 1.45965 1.21952 0.93936 0.90034 1.10327 1.22267 0.97474 0.95879 1.00016 1.22220 1.00791 0.96197 1.06382 1.25389 0.91489 0.89049 0.99881 1.84032 1.42051 1.17589 1.62596 1.45883 1.67235 1.14529 1.08518 1.19879 0.76776 0.86618 0.84662 1.90672 1.50796 1.17319 1.85181 1.23287 1.05690 1.02430 0.95029 1.84648 1.86920 1.18524 1.04707 1.22467 1.50592 0.98094 0.96697 0.92138 1.25563 0.93150 1.02337 0.94833 1.70012 1.44507 1.37771 1.03187 0.85866 0.79755 0.80271 0.80472 1.18343 1.18131 1.16403 0.89225 0.90609 0.95171 0.86439 0.86483 0.94534 0.89314 0.90410 0.74880 0.83119 0.80128 0.72625 0.74918 0.86753 0.87845 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.48 71.98 0.68 -1.88 16 2 C 0.14 2.50 2.52 44.99 0.11 2.62 16 3 H 0.06 1.53 7.06 -2.39 -0.02 1.52 16 4 C -0.12 -1.15 4.29 30.59 0.13 -1.02 16 5 C 0.13 2.14 2.52 44.99 0.11 2.25 16 6 H 0.07 1.50 7.05 -2.39 -0.02 1.49 16 7 C -0.16 -1.99 9.49 71.98 0.68 -1.31 16 8 N -0.70 -13.55 4.44 -446.53 -1.98 -15.53 16 9 C 0.60 16.53 7.75 86.44 0.67 17.20 16 10 O -0.56 -19.87 16.52 -4.33 -0.07 -19.94 16 11 C -0.11 -2.79 7.13 24.07 0.17 -2.62 16 12 C -0.14 -3.27 10.62 22.39 0.24 -3.03 16 13 C -0.24 -3.95 10.87 22.07 0.24 -3.71 16 14 C 0.01 0.15 12.08 67.10 0.81 0.96 16 15 O -0.17 -3.25 10.40 -5.03 -0.05 -3.30 16 16 N -0.71 -16.69 4.45 -442.53 -1.97 -18.65 16 17 C 0.54 19.20 7.81 87.66 0.68 19.88 16 18 O -0.56 -24.67 15.53 -3.05 -0.05 -24.71 16 19 C -0.11 -4.56 6.16 71.24 0.44 -4.12 16 20 S -0.17 -9.22 18.55 -56.49 -1.05 -10.27 16 21 C -0.53 -32.08 10.04 67.96 0.68 -31.40 16 22 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 23 C 0.05 2.81 5.50 84.86 0.47 3.28 16 24 N -0.92 -57.18 13.97 21.65 0.30 -56.88 16 25 Si 0.91 46.28 27.74 68.60 1.90 48.18 16 26 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 28 H -0.24 -12.24 6.74 99.48 0.67 -11.57 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.69 8.14 -2.38 -0.02 0.68 16 37 H 0.41 5.99 8.36 -92.71 -0.77 5.22 16 38 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 39 H 0.18 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.26 0.65 8.06 -2.91 -0.02 0.62 16 41 H 0.41 7.23 8.60 -92.70 -0.80 6.44 16 42 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 43 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 44 H 0.28 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -87.62 391.82 2.58 -85.04 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.58 Total: 18.95 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 6.13 Total: -2.88 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -3.65 Total: -91.06 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -0.17 Total: -47.96 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.90 Total: 48.18 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.05 Total: -10.27 kcal Total: -87.62 2.58 -85.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001288504766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.293 kcal (2) G-P(sol) polarization free energy of solvation -87.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds