Wall clock time and date at job start Sat Apr 11 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 H 1.08997 * 109.47571 * 304.99964 * 5 4 2 7 7 C 1.52997 * 109.47251 * 184.99523 * 5 4 2 8 8 N 1.46507 * 109.47308 * 64.99796 * 5 4 2 9 9 C 1.34769 * 120.00529 * 204.99760 * 8 5 4 10 10 O 1.21699 * 120.00108 * 0.02562 * 9 8 5 11 11 C 1.46651 * 120.00160 * 179.97438 * 9 8 5 12 12 C 1.36550 * 125.98964 * 179.71676 * 11 9 8 13 13 C 1.40364 * 106.70931 * 179.91215 * 12 11 9 14 14 C 1.35123 * 107.11272 * 0.35116 * 13 12 11 15 15 O 1.33930 * 108.77370 * 359.78405 * 14 13 12 16 16 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 17 17 C 1.34777 * 119.99525 * 274.99614 * 16 2 1 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 2 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99727 * 25 23 21 27 27 H 1.48501 * 109.47302 * 209.99797 * 25 23 21 28 28 H 1.48501 * 109.46788 * 330.00118 * 25 23 21 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 32 32 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 33 33 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 34 34 H 1.09001 * 109.47629 * 300.00075 * 7 5 4 35 35 H 1.09004 * 109.46914 * 60.00414 * 7 5 4 36 36 H 1.09008 * 109.47428 * 179.97438 * 7 5 4 37 37 H 0.97010 * 119.99474 * 25.00134 * 8 5 4 38 38 H 1.08002 * 126.64109 * 0.03928 * 12 11 9 39 39 H 1.08005 * 126.43876 * 180.15589 * 13 12 11 40 40 H 1.08004 * 125.61400 * 179.78302 * 14 13 12 41 41 H 0.97000 * 120.00580 * 95.00360 * 16 2 1 42 42 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 43 43 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 44 44 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 1 3.8570 0.4360 -1.2679 7 6 4.0644 -1.2247 -2.6243 8 7 4.1538 -1.3341 -0.1827 9 6 5.3748 -0.9911 0.2730 10 8 5.9881 -0.0820 -0.2548 11 6 5.9640 -1.7125 1.4057 12 6 7.1883 -1.4722 1.9607 13 6 7.3415 -2.3890 3.0125 14 6 6.2216 -3.1443 3.0480 15 8 5.3940 -2.7337 2.0783 16 7 2.0184 -0.6908 1.1960 17 6 2.1472 -0.0185 2.3570 18 8 1.8583 1.1582 2.4118 19 6 2.6437 -0.7305 3.5889 20 16 2.6984 0.4307 4.9762 21 6 3.2947 -0.6363 6.2451 22 1 3.5050 -1.6725 6.0248 23 6 3.4953 -0.1451 7.5277 24 7 3.2404 1.1182 7.7959 25 14 4.1282 -1.2762 8.8729 26 1 5.6125 -1.2380 8.8939 27 1 3.6027 -0.8253 10.1866 28 1 3.6725 -2.6643 8.6073 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7517 -1.7714 -1.2058 33 1 1.6053 -0.2615 -2.1371 34 1 3.7723 -2.2738 -2.6703 35 1 3.6263 -0.6882 -3.4659 36 1 5.1508 -1.1473 -2.6705 37 1 3.6648 -2.0585 0.2383 38 1 7.8999 -0.7209 1.6517 39 1 8.1955 -2.4765 3.6680 40 1 6.0261 -3.9469 3.7437 41 1 2.2492 -1.6319 1.1524 42 1 1.9698 -1.5528 3.8298 43 1 3.6437 -1.1227 3.4038 44 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001288504770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:29 Heat of formation + Delta-G solvation = -60.825301 kcal Electronic energy + Delta-G solvation = -28240.143900 eV Core-core repulsion = 24285.630740 eV Total energy + Delta-G solvation = -3954.513160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.65120 -40.14548 -39.08478 -36.95704 -34.56440 -33.09607 -32.42737 -32.35267 -30.94963 -29.50877 -28.49712 -27.06283 -25.47864 -23.93810 -21.97930 -21.74272 -21.26098 -20.72031 -19.90349 -18.56899 -17.82891 -16.84118 -16.37517 -16.29695 -16.18859 -15.97387 -15.01244 -14.80907 -14.66675 -14.48329 -14.10522 -13.89536 -13.57277 -13.27444 -13.15422 -13.00067 -12.90067 -12.71864 -12.68374 -12.54489 -12.35756 -12.30177 -11.92664 -11.58955 -11.10521 -11.06455 -11.02390 -10.96439 -10.76725 -10.33880 -10.03731 -9.81442 -9.44337 -9.35144 -9.06536 -8.82316 -8.63940 -8.21574 -6.47990 -6.21055 -3.90794 1.06197 2.39058 2.61558 2.97964 3.10055 3.15782 3.18505 3.20526 3.27068 3.30821 3.72905 4.20095 4.27142 4.58286 4.64728 4.83876 4.91878 5.01101 5.09258 5.13982 5.15439 5.21469 5.30052 5.38212 5.42316 5.51021 5.61497 5.62628 5.68194 5.73412 5.80172 5.88047 5.91557 5.94488 6.02726 6.14343 6.19601 6.25833 6.32127 6.66851 6.78202 7.29939 7.58923 7.68675 7.98052 8.35107 8.64301 9.23951 10.86479 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010732 B = 0.004315 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.492708 B = 6486.715816 C = 8431.756067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.090 0.910 4 C -0.135 4.135 5 C 0.141 3.859 6 H 0.094 0.906 7 C -0.163 4.163 8 N -0.712 5.712 9 C 0.610 3.390 10 O -0.520 6.520 11 C -0.088 4.088 12 C -0.112 4.112 13 C -0.223 4.223 14 C 0.003 3.997 15 O -0.166 6.166 16 N -0.731 5.731 17 C 0.534 3.466 18 O -0.515 6.515 19 C -0.151 4.151 20 S -0.058 6.058 21 C -0.532 4.532 22 H 0.071 0.929 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.916 3.084 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.399 0.601 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.210 0.790 41 H 0.389 0.611 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 -11.415 -18.974 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.108 0.892 4 C -0.173 4.173 5 C 0.037 3.963 6 H 0.112 0.888 7 C -0.221 4.221 8 N -0.365 5.365 9 C 0.397 3.603 10 O -0.397 6.397 11 C -0.140 4.140 12 C -0.133 4.133 13 C -0.242 4.242 14 C -0.067 4.067 15 O -0.061 6.061 16 N -0.387 5.387 17 C 0.320 3.680 18 O -0.389 6.389 19 C -0.302 4.302 20 S 0.169 5.831 21 C -0.681 4.681 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.743 3.257 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.235 0.765 38 H 0.176 0.824 39 H 0.174 0.826 40 H 0.227 0.773 41 H 0.224 0.776 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.951 -8.734 -19.235 21.146 hybrid contribution 0.826 -2.916 1.319 3.305 sum 1.778 -11.650 -17.916 21.444 Atomic orbital electron populations 1.22177 0.95207 1.01981 1.02761 1.20919 0.93985 0.97870 0.83557 0.89189 1.22262 0.94161 1.02021 0.98878 1.21053 0.92133 0.97925 0.85147 0.88775 1.22187 1.02357 1.01035 0.96552 1.46022 1.18019 1.37735 1.34675 1.16491 0.81208 0.82035 0.80594 1.90873 1.61649 1.29292 1.57929 1.21946 0.95980 0.95656 1.00374 1.21963 0.96009 0.99819 0.95495 1.21849 1.01195 0.99159 1.01952 1.24407 0.89383 1.01025 0.91900 1.84008 1.43045 1.41109 1.37978 1.46189 1.69460 1.13303 1.09744 1.20272 0.76742 0.87257 0.83752 1.90699 1.48102 1.15701 1.84389 1.23513 1.03392 1.04754 0.98555 1.85419 1.86426 1.12912 0.98376 1.22824 1.51073 0.98003 0.96158 0.91106 1.24972 0.95144 0.95488 0.97911 1.70019 1.45572 1.13245 1.21433 0.86207 0.79004 0.80205 0.80315 1.20283 1.20764 1.19730 0.92626 0.91581 0.91875 0.90665 0.88507 0.92396 0.91361 0.91873 0.76491 0.82411 0.82595 0.77327 0.77601 0.89500 0.89655 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.48 37.16 0.35 -1.30 16 2 C 0.14 1.54 2.57 -67.93 -0.17 1.36 16 3 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 4 C -0.13 -0.96 4.43 -26.73 -0.12 -1.08 16 5 C 0.14 1.30 2.58 -67.93 -0.17 1.13 16 6 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 7 C -0.16 -1.25 9.48 37.16 0.35 -0.89 16 8 N -0.71 -7.59 3.80 -55.13 -0.21 -7.80 16 9 C 0.61 8.70 7.75 -12.87 -0.10 8.60 16 10 O -0.52 -8.92 16.53 5.19 0.09 -8.83 16 11 C -0.09 -1.24 7.13 -36.80 -0.26 -1.50 16 12 C -0.11 -1.56 10.62 -39.39 -0.42 -1.98 16 13 C -0.22 -2.71 10.87 -39.89 -0.43 -3.14 16 14 C 0.00 0.03 12.08 29.62 0.36 0.39 16 15 O -0.17 -2.08 10.40 4.99 0.05 -2.03 16 16 N -0.73 -9.35 3.80 -53.80 -0.20 -9.56 16 17 C 0.53 9.96 7.81 -10.98 -0.09 9.87 16 18 O -0.52 -11.77 15.53 5.55 0.09 -11.68 16 19 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 20 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 21 C -0.53 -15.02 9.50 30.94 0.29 -14.72 16 22 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 25 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 37 H 0.40 3.54 6.26 -40.82 -0.26 3.28 16 38 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 39 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.21 1.63 8.06 -52.48 -0.42 1.21 16 41 H 0.39 3.92 6.51 -40.82 -0.27 3.66 16 42 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 390.31 15.07 5.88 5.88 Total: -1.00 -36.94 390.31 -7.44 -44.38 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.35 Total: 6.87 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -0.29 Total: -4.12 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.32 Total: -42.79 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.22 Total: -22.55 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.94 -7.44 -44.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001288504770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.442 kcal (2) G-P(sol) polarization free energy of solvation -36.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds