Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 H 1.08997 * 109.47571 * 304.99964 * 5 4 2 7 7 C 1.52997 * 109.47251 * 184.99523 * 5 4 2 8 8 N 1.46507 * 109.47308 * 64.99796 * 5 4 2 9 9 C 1.34769 * 120.00529 * 204.99760 * 8 5 4 10 10 O 1.21699 * 120.00108 * 0.02562 * 9 8 5 11 11 C 1.46651 * 120.00160 * 179.97438 * 9 8 5 12 12 C 1.36550 * 125.98964 * 179.71676 * 11 9 8 13 13 C 1.40364 * 106.70931 * 179.91215 * 12 11 9 14 14 C 1.35123 * 107.11272 * 0.35116 * 13 12 11 15 15 O 1.33930 * 108.77370 * 359.78405 * 14 13 12 16 16 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 17 17 C 1.34777 * 119.99525 * 274.99614 * 16 2 1 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 2 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99727 * 25 23 21 27 27 H 1.48501 * 109.47302 * 209.99797 * 25 23 21 28 28 H 1.48501 * 109.46788 * 330.00118 * 25 23 21 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 32 32 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 33 33 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 34 34 H 1.09001 * 109.47629 * 300.00075 * 7 5 4 35 35 H 1.09004 * 109.46914 * 60.00414 * 7 5 4 36 36 H 1.09008 * 109.47428 * 179.97438 * 7 5 4 37 37 H 0.97010 * 119.99474 * 25.00134 * 8 5 4 38 38 H 1.08002 * 126.64109 * 0.03928 * 12 11 9 39 39 H 1.08005 * 126.43876 * 180.15589 * 13 12 11 40 40 H 1.08004 * 125.61400 * 179.78302 * 14 13 12 41 41 H 0.97000 * 120.00580 * 95.00360 * 16 2 1 42 42 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 43 43 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 44 44 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 1 3.8570 0.4360 -1.2679 7 6 4.0644 -1.2247 -2.6243 8 7 4.1538 -1.3341 -0.1827 9 6 5.3748 -0.9911 0.2730 10 8 5.9881 -0.0820 -0.2548 11 6 5.9640 -1.7125 1.4057 12 6 7.1883 -1.4722 1.9607 13 6 7.3415 -2.3890 3.0125 14 6 6.2216 -3.1443 3.0480 15 8 5.3940 -2.7337 2.0783 16 7 2.0184 -0.6908 1.1960 17 6 2.1472 -0.0185 2.3570 18 8 1.8583 1.1582 2.4118 19 6 2.6437 -0.7305 3.5889 20 16 2.6984 0.4307 4.9762 21 6 3.2947 -0.6363 6.2451 22 1 3.5050 -1.6725 6.0248 23 6 3.4953 -0.1451 7.5277 24 7 3.2404 1.1182 7.7959 25 14 4.1282 -1.2762 8.8729 26 1 5.6125 -1.2380 8.8939 27 1 3.6027 -0.8253 10.1866 28 1 3.6725 -2.6643 8.6073 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7517 -1.7714 -1.2058 33 1 1.6053 -0.2615 -2.1371 34 1 3.7723 -2.2738 -2.6703 35 1 3.6263 -0.6882 -3.4659 36 1 5.1508 -1.1473 -2.6705 37 1 3.6648 -2.0585 0.2383 38 1 7.8999 -0.7209 1.6517 39 1 8.1955 -2.4765 3.6680 40 1 6.0261 -3.9469 3.7437 41 1 2.2492 -1.6319 1.1524 42 1 1.9698 -1.5528 3.8298 43 1 3.6437 -1.1227 3.4038 44 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001288504770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = -87.116201 kcal Electronic energy + Delta-G solvation = -28241.283959 eV Core-core repulsion = 24285.630740 eV Total energy + Delta-G solvation = -3955.653219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.62369 -41.24601 -40.38478 -38.06322 -35.66163 -34.56548 -34.07863 -33.46188 -32.05140 -30.50587 -29.88108 -27.76817 -27.63570 -24.89501 -23.01035 -22.73644 -22.17951 -21.81858 -21.06669 -19.81457 -19.54930 -18.00814 -17.60277 -17.35773 -17.20889 -17.07296 -16.86487 -16.40079 -15.93509 -15.75717 -15.45993 -14.98530 -14.63705 -14.53387 -14.44016 -14.20769 -13.98023 -13.72949 -13.66191 -13.56339 -13.22775 -13.21438 -13.14584 -12.92165 -12.88003 -12.58932 -12.46087 -11.88309 -11.82582 -11.70517 -11.44124 -11.12648 -11.04307 -10.91941 -10.46688 -10.26086 -9.97713 -9.61223 -8.65732 -8.32621 -6.10755 0.02988 1.27269 1.42825 1.43364 1.48106 1.57270 1.62376 1.64409 2.08921 2.15893 2.28243 2.34741 3.02030 3.33356 3.50212 3.75203 3.83753 3.94415 3.98547 4.12148 4.14335 4.25068 4.37141 4.41434 4.45293 4.52433 4.62522 4.74160 4.77251 4.81725 4.86927 4.93494 4.95151 5.01955 5.15772 5.30721 5.34584 5.37423 5.40579 5.42912 5.56618 5.81141 6.21416 6.36060 6.46917 6.97450 7.08454 7.25525 8.76822 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010732 B = 0.004315 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.492708 B = 6486.715816 C = 8431.756067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 H 0.057 0.943 4 C -0.118 4.118 5 C 0.136 3.864 6 H 0.063 0.937 7 C -0.155 4.155 8 N -0.698 5.698 9 C 0.603 3.397 10 O -0.562 6.562 11 C -0.110 4.110 12 C -0.133 4.133 13 C -0.237 4.237 14 C 0.010 3.990 15 O -0.163 6.163 16 N -0.705 5.705 17 C 0.533 3.467 18 O -0.565 6.565 19 C -0.124 4.124 20 S -0.153 6.153 21 C -0.539 4.539 22 H 0.085 0.915 23 C 0.013 3.987 24 N -0.914 5.914 25 Si 0.997 3.003 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.252 1.252 29 H 0.078 0.922 30 H 0.027 0.973 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.037 0.963 37 H 0.409 0.591 38 H 0.153 0.847 39 H 0.175 0.825 40 H 0.249 0.751 41 H 0.407 0.593 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.581 -15.237 -19.959 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.033 3.967 3 H 0.075 0.925 4 C -0.156 4.156 5 C 0.032 3.968 6 H 0.081 0.919 7 C -0.213 4.213 8 N -0.350 5.350 9 C 0.390 3.610 10 O -0.442 6.442 11 C -0.161 4.161 12 C -0.153 4.153 13 C -0.256 4.256 14 C -0.059 4.059 15 O -0.058 6.058 16 N -0.360 5.360 17 C 0.319 3.681 18 O -0.443 6.443 19 C -0.276 4.276 20 S 0.074 5.926 21 C -0.687 4.687 22 H 0.103 0.897 23 C -0.191 4.191 24 N -0.551 5.551 25 Si 0.819 3.181 26 H -0.193 1.193 27 H -0.207 1.207 28 H -0.176 1.176 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.146 0.854 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.247 0.753 38 H 0.170 0.830 39 H 0.193 0.807 40 H 0.265 0.735 41 H 0.245 0.755 42 H 0.128 0.872 43 H 0.114 0.886 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.178 -12.627 -20.280 23.890 hybrid contribution 1.042 -1.746 1.520 2.538 sum 1.220 -14.373 -18.760 23.665 Atomic orbital electron populations 1.22120 0.93955 1.03252 1.02145 1.21135 0.94895 0.96706 0.84003 0.92493 1.22244 0.91963 1.03714 0.97640 1.21213 0.93687 0.96340 0.85515 0.91888 1.22114 1.00771 1.02429 0.95955 1.46008 1.16835 1.37511 1.34642 1.16657 0.82001 0.81693 0.80633 1.90841 1.62912 1.31152 1.59342 1.21953 0.96418 0.96685 1.01093 1.22212 0.96289 1.00388 0.96455 1.22165 1.02510 0.99016 1.01910 1.25230 0.88559 1.00933 0.91220 1.83996 1.43131 1.40532 1.38152 1.45967 1.67489 1.13915 1.08622 1.20047 0.76640 0.86622 0.84805 1.90689 1.50636 1.17793 1.85219 1.23314 1.04680 1.03191 0.96377 1.85666 1.86863 1.17539 1.02561 1.23154 1.50858 0.98322 0.96325 0.89718 1.26134 0.95064 0.97151 1.00791 1.70201 1.47070 1.15703 1.22134 0.84974 0.78521 0.78443 0.76198 1.19274 1.20677 1.17603 0.90304 0.95399 0.89379 0.87348 0.85390 0.90328 0.89281 0.94411 0.75255 0.82952 0.80712 0.73493 0.75535 0.87245 0.88624 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.48 71.98 0.68 -2.13 16 2 C 0.14 2.75 2.57 44.99 0.12 2.86 16 3 H 0.06 1.58 7.58 -2.38 -0.02 1.56 16 4 C -0.12 -1.24 4.43 30.59 0.14 -1.11 16 5 C 0.14 2.29 2.58 44.99 0.12 2.41 16 6 H 0.06 1.50 7.58 -2.39 -0.02 1.48 16 7 C -0.15 -1.99 9.48 71.98 0.68 -1.31 16 8 N -0.70 -14.05 3.80 -446.54 -1.69 -15.74 16 9 C 0.60 17.51 7.75 86.44 0.67 18.18 16 10 O -0.56 -20.33 16.53 -4.35 -0.07 -20.41 16 11 C -0.11 -3.10 7.13 24.07 0.17 -2.92 16 12 C -0.13 -3.76 10.62 22.39 0.24 -3.52 16 13 C -0.24 -5.50 10.87 22.07 0.24 -5.26 16 14 C 0.01 0.20 12.08 67.10 0.81 1.01 16 15 O -0.16 -3.80 10.40 -5.06 -0.05 -3.85 16 16 N -0.70 -16.98 3.80 -442.52 -1.68 -18.66 16 17 C 0.53 20.00 7.81 87.66 0.68 20.68 16 18 O -0.57 -26.97 15.53 -3.04 -0.05 -27.02 16 19 C -0.12 -5.01 6.16 71.24 0.44 -4.57 16 20 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 21 C -0.54 -30.38 9.50 67.95 0.65 -29.73 16 22 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 23 C 0.01 0.73 5.49 84.86 0.47 1.20 16 24 N -0.91 -56.45 13.22 21.65 0.29 -56.17 16 25 Si 1.00 42.72 29.55 68.60 2.03 44.75 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.41 6.20 6.26 -92.70 -0.58 5.62 16 38 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 39 H 0.18 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.25 2.82 8.06 -2.91 -0.02 2.80 16 41 H 0.41 6.96 6.51 -92.71 -0.60 6.36 16 42 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 43 H 0.10 3.65 8.14 -2.40 -0.02 3.63 16 44 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -87.18 390.31 3.54 -83.64 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.16 Total: 27.46 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 6.10 Total: -4.22 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -3.09 Total: -90.57 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -0.17 Total: -51.28 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -87.18 3.54 -83.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001288504770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.479 kcal (2) G-P(sol) polarization free energy of solvation -87.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds