Wall clock time and date at job start Sat Apr 11 2020 05:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47578 * 2 1 4 4 C 1.52997 * 109.47232 * 120.00316 * 2 1 3 5 5 C 1.53002 * 109.47469 * 184.99745 * 4 2 1 6 6 H 1.09002 * 109.47070 * 305.00072 * 5 4 2 7 7 C 1.53000 * 109.47233 * 184.99697 * 5 4 2 8 8 N 1.46499 * 109.46799 * 65.00172 * 5 4 2 9 9 C 1.34781 * 119.99874 * 205.00309 * 8 5 4 10 10 O 1.21697 * 120.00093 * 359.97438 * 9 8 5 11 11 C 1.46659 * 120.00050 * 180.02562 * 9 8 5 12 12 C 1.36543 * 125.98704 * 180.02562 * 11 9 8 13 13 C 1.40360 * 106.70619 * 179.97438 * 12 11 9 14 14 C 1.35129 * 107.11716 * 359.97438 * 13 12 11 15 15 O 1.33932 * 108.76812 * 359.77425 * 14 13 12 16 16 N 1.46505 * 109.47317 * 240.00275 * 2 1 3 17 17 C 1.34773 * 119.99966 * 84.99750 * 16 2 1 18 18 O 1.21281 * 120.00063 * 0.02562 * 17 16 2 19 19 C 1.50705 * 119.99799 * 179.97438 * 17 16 2 20 20 S 1.81000 * 109.46822 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99938 * 180.02562 * 20 19 17 22 22 H 1.08003 * 120.00038 * 359.97438 * 21 20 19 23 23 C 1.38803 * 120.00109 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00079 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99826 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46876 * 89.99949 * 25 23 21 27 27 H 1.48500 * 109.46938 * 209.99374 * 25 23 21 28 28 H 1.48494 * 109.47307 * 329.99973 * 25 23 21 29 29 H 1.09003 * 109.47317 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47363 * 299.99952 * 1 2 3 31 31 H 1.09005 * 109.46906 * 59.99772 * 1 2 3 32 32 H 1.09008 * 109.47149 * 64.99821 * 4 2 1 33 33 H 1.08997 * 109.47163 * 304.99891 * 4 2 1 34 34 H 1.08992 * 109.47399 * 300.00166 * 7 5 4 35 35 H 1.09004 * 109.46724 * 60.00652 * 7 5 4 36 36 H 1.09001 * 109.47194 * 179.97438 * 7 5 4 37 37 H 0.97002 * 120.00410 * 24.99527 * 8 5 4 38 38 H 1.07998 * 126.64714 * 359.97438 * 12 11 9 39 39 H 1.08003 * 126.44428 * 180.02562 * 13 12 11 40 40 H 1.08000 * 125.61585 * 180.02562 * 14 13 12 41 41 H 0.97004 * 119.99684 * 265.00172 * 16 2 1 42 42 H 1.08990 * 109.47557 * 300.00474 * 19 17 16 43 43 H 1.09000 * 109.47009 * 60.00577 * 19 17 16 44 44 H 0.96994 * 120.00032 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9954 -0.9924 0.3867 7 6 4.0851 -1.4384 2.4924 8 7 3.9479 0.7892 1.4925 9 6 5.1612 1.2134 1.0867 10 8 5.9386 0.4311 0.5722 11 6 5.5450 2.6175 1.2663 12 6 6.7362 3.1765 0.9019 13 6 6.6711 4.5327 1.2576 14 6 5.4580 4.7396 1.8160 15 8 4.7804 3.5844 1.8146 16 7 2.0183 -0.6906 -1.1962 17 6 2.1470 -0.0182 -2.3571 18 8 1.8590 1.1587 -2.4115 19 6 2.6500 -0.7284 -3.5875 20 16 2.7114 0.4348 -4.9728 21 6 3.3144 -0.6303 -6.2402 22 1 3.5239 -1.6668 -6.0203 23 6 3.5213 -0.1372 -7.5211 24 7 3.2666 1.1261 -7.7891 25 14 4.1614 -1.2663 -8.8646 26 1 3.0161 -1.9033 -9.5630 27 1 4.9571 -0.4760 -9.8379 28 1 5.0195 -2.3172 -8.2609 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7516 -1.7716 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 3.6546 -1.0595 3.4193 35 1 3.8000 -2.4821 2.3593 36 1 5.1715 -1.3620 2.5381 37 1 3.3284 1.4127 1.9028 38 1 7.5675 2.6728 0.4312 39 1 7.4446 5.2721 1.1117 40 1 5.0934 5.6822 2.1966 41 1 2.2490 -1.6318 -1.1527 42 1 3.6492 -1.1202 -3.3979 43 1 1.9778 -1.5507 -3.8326 44 1 3.4108 1.4706 -8.6843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001288504772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:32 Heat of formation + Delta-G solvation = -69.283027 kcal Electronic energy + Delta-G solvation = -27066.343578 eV Core-core repulsion = 23111.463664 eV Total energy + Delta-G solvation = -3954.879914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.84800 -40.05975 -39.16911 -36.95863 -34.74877 -33.27937 -32.38976 -32.04009 -31.15095 -29.66534 -28.50327 -27.06584 -25.44223 -24.06729 -22.08679 -21.86137 -21.07805 -20.62921 -20.15677 -18.78824 -17.79669 -16.74757 -16.54007 -16.46148 -16.26855 -15.88745 -14.98262 -14.77078 -14.75321 -14.44814 -14.27335 -13.96318 -13.59071 -13.39726 -13.19051 -13.14797 -12.94655 -12.87459 -12.67821 -12.55693 -12.38839 -12.29268 -11.91854 -11.55494 -11.16163 -11.03005 -10.98248 -10.94222 -10.72081 -10.41416 -10.25260 -9.77418 -9.39851 -9.33063 -9.03153 -8.87887 -8.84851 -8.19014 -6.45035 -6.17784 -3.87646 0.89110 2.17119 2.46689 2.98167 3.06806 3.08904 3.15857 3.25303 3.30839 3.35852 3.76390 4.24388 4.26890 4.46691 4.56472 4.71090 4.81607 4.84497 5.08497 5.15039 5.17391 5.22991 5.26535 5.35058 5.42111 5.45582 5.49987 5.57539 5.61443 5.67123 5.70795 5.79226 5.92892 5.94694 6.02184 6.11734 6.18337 6.19750 6.20849 6.60126 6.70903 7.24785 7.63587 7.75646 7.91647 8.39309 8.67473 9.27619 10.89727 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009974 B = 0.003017 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.762196 B = 9277.247481 C =10685.305396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.135 4.135 5 C 0.139 3.861 6 H 0.096 0.904 7 C -0.163 4.163 8 N -0.714 5.714 9 C 0.606 3.394 10 O -0.514 6.514 11 C -0.079 4.079 12 C -0.118 4.118 13 C -0.224 4.224 14 C -0.007 4.007 15 O -0.165 6.165 16 N -0.734 5.734 17 C 0.534 3.466 18 O -0.517 6.517 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.404 0.596 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.210 0.790 41 H 0.396 0.604 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.120 0.034 26.155 26.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.174 4.174 5 C 0.035 3.965 6 H 0.114 0.886 7 C -0.222 4.222 8 N -0.365 5.365 9 C 0.393 3.607 10 O -0.391 6.391 11 C -0.131 4.131 12 C -0.138 4.138 13 C -0.243 4.243 14 C -0.077 4.077 15 O -0.060 6.060 16 N -0.388 5.388 17 C 0.321 3.679 18 O -0.391 6.391 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.238 0.762 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.227 0.773 41 H 0.230 0.770 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.116 1.498 25.663 25.707 hybrid contribution 0.731 -1.992 -0.690 2.232 sum 0.615 -0.494 24.973 24.985 Atomic orbital electron populations 1.22185 0.95261 1.02081 1.02671 1.20878 0.93946 0.97801 0.83767 0.89416 1.22252 0.94139 1.02618 0.98367 1.21075 0.94553 0.80628 1.00239 0.88578 1.22189 1.02219 0.99945 0.97816 1.45913 1.16432 1.11639 1.62557 1.16515 0.82241 0.83859 0.78115 1.90905 1.51402 1.53306 1.43512 1.22070 0.92966 0.89750 1.08345 1.22020 0.97670 0.94184 0.99972 1.21884 0.99396 0.97071 1.05989 1.24402 0.92203 0.88763 1.02354 1.84040 1.41733 1.17297 1.62971 1.46079 1.69437 1.13793 1.09523 1.20280 0.76673 0.87212 0.83780 1.90689 1.48319 1.15718 1.84420 1.23535 1.03663 1.04821 0.98445 1.85363 1.86244 1.13011 0.98730 1.22876 1.50892 0.98140 0.96366 0.90958 1.24984 0.95116 0.95516 0.97942 1.70019 1.45714 1.13194 1.21438 0.86175 0.78828 0.79997 0.80556 1.20299 1.20757 1.19669 0.92503 0.91990 0.91589 0.89392 0.89746 0.92375 0.91301 0.91876 0.76154 0.82160 0.82535 0.77324 0.76975 0.89269 0.89311 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.48 37.15 0.35 -1.32 16 2 C 0.14 1.54 2.52 -67.93 -0.17 1.37 16 3 H 0.09 1.17 7.05 -51.93 -0.37 0.81 16 4 C -0.14 -0.97 4.29 -26.73 -0.11 -1.08 16 5 C 0.14 1.28 2.52 -67.93 -0.17 1.11 16 6 H 0.10 1.14 7.05 -51.93 -0.37 0.77 16 7 C -0.16 -1.25 9.48 37.16 0.35 -0.90 16 8 N -0.71 -7.43 4.44 -55.12 -0.24 -7.68 16 9 C 0.61 8.31 7.75 -12.86 -0.10 8.21 16 10 O -0.51 -8.70 16.53 5.19 0.09 -8.61 16 11 C -0.08 -1.01 7.13 -36.80 -0.26 -1.27 16 12 C -0.12 -1.42 10.62 -39.40 -0.42 -1.84 16 13 C -0.22 -2.10 10.87 -39.89 -0.43 -2.53 16 14 C -0.01 -0.06 12.08 29.63 0.36 0.30 16 15 O -0.17 -1.77 10.40 4.99 0.05 -1.72 16 16 N -0.73 -9.71 4.45 -53.81 -0.24 -9.95 16 17 C 0.53 10.18 7.81 -10.98 -0.09 10.09 16 18 O -0.52 -11.89 15.52 5.56 0.09 -11.80 16 19 C -0.15 -3.23 6.16 36.01 0.22 -3.01 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 21 C -0.53 -15.61 9.50 30.94 0.29 -15.31 16 22 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 23 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 24 N -0.87 -26.65 13.22 55.49 0.73 -25.92 16 25 Si 0.92 21.86 29.55 -169.99 -5.02 16.83 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 28 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.40 3.40 8.36 -40.82 -0.34 3.06 16 38 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 39 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 40 H 0.21 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.40 4.15 8.60 -40.82 -0.35 3.80 16 42 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 394.50 15.07 5.95 5.95 Total: -1.00 -38.20 394.50 -7.56 -45.76 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.47 Total: 5.16 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -0.27 Total: -4.12 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.25 Total: -43.55 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.22 Total: -22.13 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.20 -7.56 -45.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001288504772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.523 kcal (2) G-P(sol) polarization free energy of solvation -38.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds