Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47578 * 2 1 4 4 C 1.52997 * 109.47232 * 120.00316 * 2 1 3 5 5 C 1.53002 * 109.47469 * 184.99745 * 4 2 1 6 6 H 1.09002 * 109.47070 * 305.00072 * 5 4 2 7 7 C 1.53000 * 109.47233 * 184.99697 * 5 4 2 8 8 N 1.46499 * 109.46799 * 65.00172 * 5 4 2 9 9 C 1.34781 * 119.99874 * 205.00309 * 8 5 4 10 10 O 1.21697 * 120.00093 * 359.97438 * 9 8 5 11 11 C 1.46659 * 120.00050 * 180.02562 * 9 8 5 12 12 C 1.36543 * 125.98704 * 180.02562 * 11 9 8 13 13 C 1.40360 * 106.70619 * 179.97438 * 12 11 9 14 14 C 1.35129 * 107.11716 * 359.97438 * 13 12 11 15 15 O 1.33932 * 108.76812 * 359.77425 * 14 13 12 16 16 N 1.46505 * 109.47317 * 240.00275 * 2 1 3 17 17 C 1.34773 * 119.99966 * 84.99750 * 16 2 1 18 18 O 1.21281 * 120.00063 * 0.02562 * 17 16 2 19 19 C 1.50705 * 119.99799 * 179.97438 * 17 16 2 20 20 S 1.81000 * 109.46822 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99938 * 180.02562 * 20 19 17 22 22 H 1.08003 * 120.00038 * 359.97438 * 21 20 19 23 23 C 1.38803 * 120.00109 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00079 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99826 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46876 * 89.99949 * 25 23 21 27 27 H 1.48500 * 109.46938 * 209.99374 * 25 23 21 28 28 H 1.48494 * 109.47307 * 329.99973 * 25 23 21 29 29 H 1.09003 * 109.47317 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47363 * 299.99952 * 1 2 3 31 31 H 1.09005 * 109.46906 * 59.99772 * 1 2 3 32 32 H 1.09008 * 109.47149 * 64.99821 * 4 2 1 33 33 H 1.08997 * 109.47163 * 304.99891 * 4 2 1 34 34 H 1.08992 * 109.47399 * 300.00166 * 7 5 4 35 35 H 1.09004 * 109.46724 * 60.00652 * 7 5 4 36 36 H 1.09001 * 109.47194 * 179.97438 * 7 5 4 37 37 H 0.97002 * 120.00410 * 24.99527 * 8 5 4 38 38 H 1.07998 * 126.64714 * 359.97438 * 12 11 9 39 39 H 1.08003 * 126.44428 * 180.02562 * 13 12 11 40 40 H 1.08000 * 125.61585 * 180.02562 * 14 13 12 41 41 H 0.97004 * 119.99684 * 265.00172 * 16 2 1 42 42 H 1.08990 * 109.47557 * 300.00474 * 19 17 16 43 43 H 1.09000 * 109.47009 * 60.00577 * 19 17 16 44 44 H 0.96994 * 120.00032 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9954 -0.9924 0.3867 7 6 4.0851 -1.4384 2.4924 8 7 3.9479 0.7892 1.4925 9 6 5.1612 1.2134 1.0867 10 8 5.9386 0.4311 0.5722 11 6 5.5450 2.6175 1.2663 12 6 6.7362 3.1765 0.9019 13 6 6.6711 4.5327 1.2576 14 6 5.4580 4.7396 1.8160 15 8 4.7804 3.5844 1.8146 16 7 2.0183 -0.6906 -1.1962 17 6 2.1470 -0.0182 -2.3571 18 8 1.8590 1.1587 -2.4115 19 6 2.6500 -0.7284 -3.5875 20 16 2.7114 0.4348 -4.9728 21 6 3.3144 -0.6303 -6.2402 22 1 3.5239 -1.6668 -6.0203 23 6 3.5213 -0.1372 -7.5211 24 7 3.2666 1.1261 -7.7891 25 14 4.1614 -1.2663 -8.8646 26 1 3.0161 -1.9033 -9.5630 27 1 4.9571 -0.4760 -9.8379 28 1 5.0195 -2.3172 -8.2609 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7516 -1.7716 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 3.6546 -1.0595 3.4193 35 1 3.8000 -2.4821 2.3593 36 1 5.1715 -1.3620 2.5381 37 1 3.3284 1.4127 1.9028 38 1 7.5675 2.6728 0.4312 39 1 7.4446 5.2721 1.1117 40 1 5.0934 5.6822 2.1966 41 1 2.2490 -1.6318 -1.1527 42 1 3.6492 -1.1202 -3.3979 43 1 1.9778 -1.5507 -3.8326 44 1 3.4108 1.4706 -8.6843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001288504772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -97.827973 kcal Electronic energy + Delta-G solvation = -27067.581380 eV Core-core repulsion = 23111.463664 eV Total energy + Delta-G solvation = -3956.117716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.65821 -41.11881 -40.46140 -38.02157 -35.84890 -34.60626 -34.09929 -33.13714 -32.20317 -30.47581 -29.97688 -27.76470 -27.67307 -24.92557 -23.00256 -22.75030 -22.00710 -21.61037 -21.30788 -19.90686 -19.58841 -17.95161 -17.57284 -17.39919 -17.34173 -16.93482 -16.89550 -16.39164 -15.91715 -15.79644 -15.38344 -15.08410 -14.79988 -14.54246 -14.44810 -14.21392 -14.00376 -13.73940 -13.66215 -13.58490 -13.29313 -13.18981 -13.09010 -12.97138 -12.90187 -12.62463 -12.45680 -11.97027 -11.76570 -11.72140 -11.45735 -11.16013 -11.08584 -10.91513 -10.31065 -10.30825 -10.09361 -9.66523 -8.68815 -8.36613 -6.14871 0.00003 1.25326 1.39747 1.40738 1.45048 1.56324 1.62266 1.64182 2.07230 2.20415 2.25138 2.32549 2.97330 3.30429 3.52108 3.72466 3.82487 3.91850 4.00029 4.09399 4.13004 4.25614 4.35831 4.44237 4.46542 4.49646 4.58947 4.71647 4.75820 4.82504 4.85701 4.91068 4.92746 5.06690 5.13687 5.29336 5.33753 5.35969 5.39035 5.39403 5.58930 5.79853 6.17676 6.38121 6.52066 6.98293 7.04385 7.27038 8.72854 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009974 B = 0.003017 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.762196 B = 9277.247481 C =10685.305396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.136 3.864 3 H 0.060 0.940 4 C -0.119 4.119 5 C 0.133 3.867 6 H 0.067 0.933 7 C -0.155 4.155 8 N -0.701 5.701 9 C 0.598 3.402 10 O -0.562 6.562 11 C -0.111 4.111 12 C -0.136 4.136 13 C -0.237 4.237 14 C 0.011 3.989 15 O -0.168 6.168 16 N -0.708 5.708 17 C 0.534 3.466 18 O -0.564 6.564 19 C -0.132 4.132 20 S -0.150 6.150 21 C -0.549 4.549 22 H 0.081 0.919 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.265 1.265 27 H -0.276 1.276 28 H -0.260 1.260 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.026 0.974 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.036 0.964 37 H 0.414 0.586 38 H 0.152 0.848 39 H 0.182 0.818 40 H 0.258 0.742 41 H 0.413 0.587 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.774 -1.351 28.238 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.032 3.968 3 H 0.079 0.921 4 C -0.157 4.157 5 C 0.029 3.971 6 H 0.085 0.915 7 C -0.213 4.213 8 N -0.352 5.352 9 C 0.385 3.615 10 O -0.443 6.443 11 C -0.163 4.163 12 C -0.156 4.156 13 C -0.256 4.256 14 C -0.058 4.058 15 O -0.063 6.063 16 N -0.362 5.362 17 C 0.320 3.680 18 O -0.443 6.443 19 C -0.283 4.283 20 S 0.077 5.923 21 C -0.696 4.696 22 H 0.099 0.901 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.821 3.179 26 H -0.190 1.190 27 H -0.201 1.201 28 H -0.184 1.184 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.046 0.954 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.055 0.945 37 H 0.251 0.749 38 H 0.169 0.831 39 H 0.199 0.801 40 H 0.274 0.726 41 H 0.250 0.750 42 H 0.117 0.883 43 H 0.129 0.871 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.052 0.069 27.817 27.837 hybrid contribution 0.985 -1.496 -1.186 2.148 sum -0.067 -1.427 26.631 26.669 Atomic orbital electron populations 1.22132 0.94059 1.03206 1.02170 1.21120 0.94804 0.96847 0.84022 0.92141 1.22235 0.92060 1.04218 0.97173 1.21223 0.96048 0.79962 0.99819 0.91525 1.22119 1.00539 1.00927 0.97752 1.45918 1.15441 1.12552 1.61290 1.16771 0.82761 0.84166 0.77797 1.90858 1.52878 1.54604 1.45933 1.21964 0.93754 0.90054 1.10537 1.22269 0.97477 0.95893 1.00008 1.22226 1.00838 0.96194 1.06352 1.25399 0.91417 0.89119 0.99897 1.84033 1.41767 1.17718 1.62783 1.45882 1.67414 1.14445 1.08496 1.19983 0.76668 0.86608 0.84770 1.90673 1.50774 1.17604 1.85217 1.23387 1.05018 1.03365 0.96519 1.85513 1.86631 1.17443 1.02680 1.23206 1.51139 0.98392 0.96897 0.90122 1.26137 0.94986 0.97241 1.00710 1.70182 1.46834 1.15453 1.22269 0.84948 0.78495 0.77723 0.76782 1.19011 1.20145 1.18386 0.90494 0.89205 0.95422 0.86384 0.86469 0.90404 0.89226 0.94500 0.74920 0.83066 0.80079 0.72600 0.74967 0.88268 0.87135 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.48 71.98 0.68 -2.16 16 2 C 0.14 2.74 2.52 44.99 0.11 2.86 16 3 H 0.06 1.60 7.05 -2.39 -0.02 1.59 16 4 C -0.12 -1.28 4.29 30.59 0.13 -1.15 16 5 C 0.13 2.27 2.52 44.99 0.11 2.38 16 6 H 0.07 1.56 7.05 -2.39 -0.02 1.55 16 7 C -0.16 -2.06 9.48 71.98 0.68 -1.38 16 8 N -0.70 -14.48 4.44 -446.51 -1.98 -16.47 16 9 C 0.60 17.31 7.75 86.44 0.67 17.98 16 10 O -0.56 -20.46 16.53 -4.34 -0.07 -20.53 16 11 C -0.11 -2.96 7.13 24.07 0.17 -2.79 16 12 C -0.14 -3.44 10.62 22.39 0.24 -3.20 16 13 C -0.24 -4.24 10.87 22.07 0.24 -4.00 16 14 C 0.01 0.16 12.08 67.10 0.81 0.97 16 15 O -0.17 -3.50 10.40 -5.07 -0.05 -3.55 16 16 N -0.71 -18.04 4.45 -442.54 -1.97 -20.01 16 17 C 0.53 20.69 7.81 87.66 0.68 21.37 16 18 O -0.56 -27.07 15.52 -3.03 -0.05 -27.12 16 19 C -0.13 -5.58 6.16 71.24 0.44 -5.14 16 20 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 21 C -0.55 -32.57 9.50 67.96 0.65 -31.92 16 22 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 23 C 0.01 0.82 5.49 84.86 0.47 1.29 16 24 N -0.91 -57.36 13.22 21.65 0.29 -57.08 16 25 Si 1.00 44.91 29.55 68.60 2.03 46.94 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 28 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.41 6.59 8.36 -92.71 -0.77 5.82 16 38 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 39 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.26 0.96 8.06 -2.91 -0.02 0.94 16 41 H 0.41 7.78 8.60 -92.71 -0.80 6.98 16 42 H 0.10 3.99 8.14 -2.40 -0.02 3.97 16 43 H 0.11 4.17 8.14 -2.39 -0.02 4.15 16 44 H 0.27 15.82 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -90.54 394.50 2.57 -87.97 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -0.54 Total: 24.60 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 6.09 Total: -4.90 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -3.67 Total: -93.55 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -0.17 Total: -51.20 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -90.54 2.57 -87.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001288504772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.860 kcal (2) G-P(sol) polarization free energy of solvation -90.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds