Wall clock time and date at job start Sat Apr 11 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47199 * 331.52589 * 3 2 1 5 5 C 1.42906 * 114.00002 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47132 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46713 * 179.97438 * 6 5 4 8 8 O 1.21271 * 120.00033 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99514 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99541 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46740 * 179.97438 * 10 9 7 12 12 C 1.53501 * 114.20620 * 184.99715 * 11 10 9 13 13 N 1.47065 * 87.98741 * 220.15007 * 12 11 10 14 14 C 1.34775 * 136.05752 * 207.08848 * 13 12 11 15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16 21 21 N 1.31626 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47043 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47048 * 119.99960 * 22 20 18 25 25 H 1.48504 * 109.47465 * 240.00413 * 22 20 18 26 26 C 1.47067 * 87.88377 * 27.34414 * 13 12 11 27 27 H 4.38441 * 5.44433 * 179.97438 * 4 1 2 28 28 H 1.08992 * 109.46884 * 211.52098 * 3 2 1 29 29 H 1.09003 * 109.46717 * 91.52574 * 3 2 1 30 30 H 1.09001 * 109.46493 * 59.99878 * 5 4 3 31 31 H 1.08992 * 109.46857 * 299.99559 * 5 4 3 32 32 H 1.09000 * 109.46950 * 59.99970 * 6 5 4 33 33 H 1.09002 * 109.47197 * 299.99884 * 6 5 4 34 34 H 0.97004 * 120.00382 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.47448 * 60.00063 * 10 9 7 36 36 H 1.08992 * 109.47028 * 299.99605 * 10 9 7 37 37 H 1.09001 * 113.28594 * 318.06464 * 11 10 9 38 38 H 1.09001 * 113.46643 * 105.36708 * 12 11 10 39 39 H 1.09004 * 113.51834 * 334.94152 * 12 11 10 40 40 H 1.09001 * 109.47434 * 59.99478 * 16 14 13 41 41 H 1.08999 * 109.47072 * 299.99957 * 16 14 13 42 42 H 0.97004 * 120.00604 * 179.97438 * 21 20 18 43 43 H 1.09001 * 113.47005 * 87.43764 * 26 13 12 44 44 H 1.09003 * 113.46723 * 217.87945 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1229 -1.1834 0.6423 5 6 4.5476 -1.2816 0.6966 6 6 4.9427 -2.5806 1.4019 7 6 6.4451 -2.6845 1.4586 8 8 7.1320 -1.8063 0.9814 9 7 7.0252 -3.7538 2.0386 10 6 8.4856 -3.8544 2.0942 11 6 8.8808 -5.1535 2.7994 12 6 10.3906 -5.3128 3.0256 13 7 10.2415 -6.7323 2.6713 14 6 10.8883 -7.8783 2.9624 15 8 11.8562 -7.8596 3.6929 16 6 10.4096 -9.1828 2.3792 17 16 11.4771 -10.5276 2.9520 18 6 10.7106 -11.8924 2.1430 19 1 9.8440 -11.7328 1.5186 20 6 11.2242 -13.1718 2.3034 21 7 12.2836 -13.3657 3.0601 22 14 10.4111 -14.6189 1.4464 23 1 9.2460 -14.1382 0.6612 24 1 11.3881 -15.2671 0.5350 25 1 9.9532 -15.6017 2.4611 26 6 9.0797 -6.3502 1.8546 27 1 -1.0498 -0.0003 0.0004 28 1 3.0090 0.8768 0.5372 29 1 3.0093 0.0282 -1.0274 30 1 4.9495 -0.4320 1.2487 31 1 4.9506 -1.2805 -0.3161 32 1 4.5406 -3.4304 0.8502 33 1 4.5396 -2.5813 2.4147 34 1 6.4757 -4.4564 2.4200 35 1 8.8877 -3.0050 2.6463 36 1 8.8887 -3.8533 1.0815 37 1 8.2721 -5.3695 3.6775 38 1 10.6938 -5.1531 4.0603 39 1 10.9984 -4.7501 2.3169 40 1 10.4453 -9.1293 1.2911 41 1 9.3849 -9.3700 2.7003 42 1 12.6424 -14.2600 3.1725 43 1 9.3410 -6.0607 0.8367 44 1 8.2659 -7.0743 1.8917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297203978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:37 Heat of formation + Delta-G solvation = -53.670848 kcal Electronic energy + Delta-G solvation = -24749.866132 eV Core-core repulsion = 20795.663213 eV Total energy + Delta-G solvation = -3954.202919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.57356 -40.67348 -39.15514 -38.89562 -35.72386 -34.60173 -34.43866 -32.80024 -32.09217 -30.18711 -28.07368 -27.70720 -27.01806 -26.65130 -24.26685 -22.12389 -21.30399 -20.35176 -19.53307 -19.40572 -18.38529 -18.00229 -17.52100 -17.44601 -17.04539 -16.90840 -16.82902 -16.47300 -16.35094 -15.87277 -15.80821 -15.37791 -14.85413 -14.65047 -14.38991 -14.16592 -14.02289 -13.65910 -13.57711 -13.41576 -13.22694 -13.04809 -12.92160 -12.62043 -12.60587 -12.45890 -12.37354 -11.73134 -11.67010 -11.54005 -11.44241 -11.17125 -11.02807 -10.88178 -10.56347 -10.30409 -10.04859 -9.79173 -8.70105 -8.36091 -6.15228 1.19752 1.41212 1.42290 1.45198 1.53190 1.56573 1.64744 1.82248 1.96353 2.16257 2.25838 2.96324 2.98412 3.19177 3.25392 3.60828 3.64167 3.78169 3.81746 4.05823 4.08674 4.16362 4.24605 4.27442 4.33083 4.42723 4.45371 4.47361 4.54956 4.58412 4.60809 4.78420 4.81986 4.85174 4.88826 4.90545 5.03875 5.23106 5.40593 5.47251 6.08358 6.18628 6.55316 6.59645 6.59879 7.05195 7.07891 7.26032 8.73551 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.001476 C = 0.001361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.412214 B =18971.207048 C =20570.551962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.239 4.239 3 C 0.168 3.832 4 O -0.402 6.402 5 C 0.076 3.924 6 C -0.134 4.134 7 C 0.520 3.480 8 O -0.585 6.585 9 N -0.715 5.715 10 C 0.138 3.862 11 C -0.108 4.108 12 C 0.105 3.895 13 N -0.655 5.655 14 C 0.559 3.441 15 O -0.570 6.570 16 C -0.118 4.118 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.273 1.273 26 C 0.100 3.900 27 H 0.251 0.749 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.419 0.581 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.272 0.728 43 H 0.104 0.896 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.075 27.260 -6.239 36.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.239 4.239 3 C 0.093 3.907 4 O -0.322 6.322 5 C 0.000 4.000 6 C -0.174 4.174 7 C 0.307 3.693 8 O -0.465 6.465 9 N -0.368 5.368 10 C 0.014 3.986 11 C -0.127 4.127 12 C -0.017 4.017 13 N -0.391 5.391 14 C 0.348 3.652 15 O -0.449 6.449 16 C -0.269 4.269 17 S 0.074 5.926 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.198 1.198 26 C -0.022 4.022 27 H 0.268 0.732 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.257 0.743 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.145 0.855 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.081 0.919 43 H 0.122 0.878 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.021 27.441 -5.298 34.970 hybrid contribution -1.055 -1.167 -0.994 1.861 sum -22.075 26.273 -6.292 34.888 Atomic orbital electron populations 1.25862 0.96879 0.96719 0.98641 1.23134 0.94949 1.03330 1.02451 1.19226 0.84398 0.88412 0.98678 1.87830 1.22137 1.42209 1.80033 1.22171 0.79385 0.97830 1.00627 1.21441 0.90779 0.99827 1.05304 1.20672 0.90730 0.81129 0.76745 1.90728 1.66416 1.40983 1.48376 1.45848 1.07711 1.23567 1.59658 1.21148 0.80297 0.96183 1.01005 1.23088 0.95818 0.93798 0.99987 1.23142 0.96754 0.79302 1.02548 1.49574 1.33264 1.06062 1.50208 1.19638 0.81358 0.84129 0.80061 1.90693 1.28371 1.86636 1.39162 1.23257 1.04503 0.94689 1.04430 1.85617 1.41685 0.99259 1.65996 1.23220 1.17659 0.93729 1.34729 0.89858 1.26133 0.95395 1.01702 0.95807 1.70188 1.23090 1.23585 1.37941 0.84892 0.78363 0.76672 0.77929 1.17928 1.19968 1.19844 1.23530 0.87003 0.95535 0.96084 0.73227 0.89442 0.89505 0.92379 0.92431 0.86149 0.86108 0.74336 0.90616 0.90750 0.85464 0.90716 0.88146 0.87750 0.87375 0.91943 0.87844 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 19.25 74.32 1.43 -0.32 16 2 C -0.24 -3.36 13.73 31.13 0.43 -2.94 16 3 C 0.17 1.94 6.41 70.18 0.45 2.39 16 4 O -0.40 -5.73 10.30 -148.98 -1.53 -7.26 16 5 C 0.08 0.88 5.23 71.98 0.38 1.26 16 6 C -0.13 -1.03 6.07 29.85 0.18 -0.85 16 7 C 0.52 6.23 7.83 87.66 0.69 6.92 16 8 O -0.58 -12.14 15.98 -3.00 -0.05 -12.18 16 9 N -0.72 -5.15 5.56 -463.07 -2.57 -7.72 16 10 C 0.14 1.23 5.59 86.38 0.48 1.72 16 11 C -0.11 -1.05 4.11 -10.37 -0.04 -1.09 16 12 C 0.11 1.84 8.19 83.18 0.68 2.52 16 13 N -0.65 -16.57 3.69 -857.77 -3.16 -19.74 16 14 C 0.56 21.34 8.10 87.66 0.71 22.05 16 15 O -0.57 -27.51 16.64 -3.02 -0.05 -27.56 16 16 C -0.12 -4.74 5.98 71.24 0.43 -4.31 16 17 S -0.15 -8.55 20.57 -56.49 -1.16 -9.72 16 18 C -0.55 -31.07 9.50 67.95 0.65 -30.42 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.82 5.49 84.86 0.47 1.28 16 21 N -0.91 -55.92 13.22 21.65 0.29 -55.63 16 22 Si 1.00 43.21 29.55 68.60 2.03 45.23 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 26 C 0.10 1.38 8.00 83.26 0.67 2.05 16 27 H 0.25 0.60 7.80 -4.43 -0.03 0.57 16 28 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 31 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 32 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.42 0.71 8.47 -92.71 -0.79 -0.07 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.77 7.81 -2.39 -0.02 0.75 16 37 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.10 1.49 8.11 -2.39 -0.02 1.47 16 40 H 0.10 3.84 8.14 -2.40 -0.02 3.82 16 41 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.10 1.17 7.88 -2.39 -0.02 1.15 16 44 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -88.33 404.12 1.59 -86.74 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.22 Total: 7.58 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 7.59 Total: 0.26 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -5.45 Total: -83.09 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -1.63 Total: -47.01 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.72 kcal Total: -88.33 1.59 -86.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297203978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.067 kcal (2) G-P(sol) polarization free energy of solvation -88.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds